Wall clock time and date at job start Tue Mar 31 2020 06:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30707 * 1 3 3 Si 1.86804 * 119.99901 * 2 1 4 4 H 1.48496 * 109.47012 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.46938 * 300.00388 * 3 2 1 6 6 H 1.48502 * 109.46984 * 59.99851 * 3 2 1 7 7 C 1.40141 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00120 * 179.97438 * 7 2 1 9 9 C 1.40775 * 119.99967 * 359.97438 * 7 2 1 10 10 N 1.33717 * 119.94134 * 0.28598 * 9 7 2 11 11 C 1.31276 * 121.63400 * 180.29004 * 10 9 7 12 12 C 1.39076 * 121.35254 * 359.68741 * 11 10 9 13 13 C 1.38359 * 119.73164 * 0.02562 * 12 11 10 14 14 C 1.39729 * 118.47300 * 0.02562 * 13 12 11 15 15 C 1.47726 * 120.65234 * 179.97438 * 14 13 12 16 16 C 1.39974 * 120.15260 * 89.99462 * 15 14 13 17 17 F 1.35099 * 120.05124 * 0.02562 * 16 15 14 18 18 C 1.38135 * 119.90472 * 179.97438 * 16 15 14 19 19 C 1.38348 * 120.20582 * 0.02562 * 18 16 15 20 20 C 1.38822 * 120.30420 * 359.97438 * 19 18 16 21 21 O 1.35971 * 119.95253 * 179.97438 * 20 19 18 22 22 C 1.38503 * 120.09617 * 0.02562 * 20 19 18 23 23 Cl 1.73595 * 120.10681 * 179.97438 * 22 20 19 24 24 H 0.96995 * 120.00505 * 359.97438 * 1 2 3 25 25 H 1.08004 * 119.32133 * 179.70527 * 11 10 9 26 26 H 1.07999 * 120.13530 * 180.02562 * 12 11 10 27 27 H 1.07993 * 120.75855 * 179.97438 * 13 12 11 28 28 H 1.08005 * 119.90211 * 179.72427 * 18 16 15 29 29 H 1.08003 * 119.84516 * 179.97438 * 19 18 16 30 30 H 0.96704 * 113.99955 * 270.00421 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2411 1.6178 0.0000 4 1 3.7010 1.3464 -0.0006 5 1 1.8822 2.3965 -1.2125 6 1 1.8822 2.3965 1.2125 7 6 2.0078 -1.2136 -0.0005 8 1 3.0879 -1.2136 -0.0010 9 6 1.3040 -2.4328 -0.0005 10 7 -0.0331 -2.4315 -0.0058 11 6 -0.7228 -3.5485 -0.0003 12 6 -0.0923 -4.7882 0.0048 13 6 1.2897 -4.8551 0.0046 14 6 2.0145 -3.6606 -0.0002 15 6 3.4917 -3.6759 0.0000 16 6 4.1948 -3.6882 -1.2102 17 9 3.5237 -3.6856 -2.3827 18 6 5.5761 -3.7020 -1.2040 19 6 6.2668 -3.7042 -0.0053 20 6 5.5782 -3.6921 1.2000 21 8 6.2642 -3.6949 2.3739 22 6 4.1932 -3.6782 1.2085 23 17 3.3318 -3.6637 2.7155 24 1 -0.4850 0.8400 0.0004 25 1 -1.8019 -3.5039 -0.0001 26 1 -0.6790 -5.6949 0.0088 27 1 1.7964 -5.8088 0.0089 28 1 6.1186 -3.7160 -2.1379 29 1 7.3468 -3.7155 -0.0073 30 1 6.4532 -4.5791 2.7169 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245831046.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:57 Heat of formation + Delta-G solvation = -54.974495 kcal Electronic energy + Delta-G solvation = -20842.282403 eV Core-core repulsion = 17349.180667 eV Total energy + Delta-G solvation = -3493.101736 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.79476 -40.79686 -39.80289 -37.53261 -37.23432 -35.57013 -33.71818 -32.16878 -30.69658 -29.84575 -27.59471 -24.78486 -23.59247 -23.32806 -22.16641 -19.42201 -19.22314 -18.63025 -17.87297 -17.59444 -16.70629 -16.52468 -16.12965 -15.99253 -15.77289 -15.36395 -14.80613 -14.46495 -14.25814 -13.91999 -13.73345 -13.48887 -13.11670 -12.92358 -12.81408 -12.71919 -12.33292 -12.15586 -11.99129 -11.80209 -11.45569 -11.28413 -10.10342 -9.89188 -9.52751 -9.48776 -9.31181 -8.33803 -6.53644 -0.03275 0.06309 0.80372 1.10380 1.21289 1.34450 1.48575 1.48799 2.17470 2.36106 2.80861 3.09248 3.34344 3.78854 3.82697 4.02713 4.22554 4.27965 4.34792 4.58313 4.75431 4.87094 4.96026 5.03140 5.08236 5.12197 5.18567 5.44852 5.62437 5.70226 5.84754 6.11364 6.25509 6.68438 6.77020 6.95046 8.15750 8.38905 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.012779 B = 0.008210 C = 0.007003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.620767 B = 3409.584804 C = 3997.524174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.747 5.747 2 C 0.028 3.972 3 Si 0.970 3.030 4 H -0.257 1.257 5 H -0.261 1.261 6 H -0.263 1.263 7 C -0.444 4.444 8 H 0.076 0.924 9 C 0.255 3.745 10 N -0.519 5.519 11 C 0.112 3.888 12 C -0.311 4.311 13 C -0.036 4.036 14 C -0.239 4.239 15 C -0.014 4.014 16 C 0.076 3.924 17 F -0.145 7.145 18 C -0.123 4.123 19 C -0.105 4.105 20 C 0.108 3.892 21 O -0.488 6.488 22 C -0.051 4.051 23 Cl -0.058 7.058 24 H 0.280 0.720 25 H 0.138 0.862 26 H 0.128 0.872 27 H 0.119 0.881 28 H 0.175 0.825 29 H 0.186 0.814 30 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.193 -6.704 0.944 13.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.180 1.180 5 H -0.186 1.186 6 H -0.188 1.188 7 C -0.475 4.475 8 H 0.094 0.906 9 C 0.131 3.869 10 N -0.232 5.232 11 C -0.055 4.055 12 C -0.334 4.334 13 C -0.060 4.060 14 C -0.244 4.244 15 C -0.017 4.017 16 C 0.057 3.943 17 F -0.124 7.124 18 C -0.142 4.142 19 C -0.123 4.123 20 C 0.061 3.939 21 O -0.301 6.301 22 C -0.078 4.078 23 Cl -0.028 7.028 24 H 0.091 0.909 25 H 0.156 0.844 26 H 0.146 0.854 27 H 0.137 0.863 28 H 0.193 0.807 29 H 0.203 0.797 30 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 11.462 -5.135 0.987 12.598 hybrid contribution -0.182 -0.654 0.058 0.682 sum 11.280 -5.789 1.045 12.722 Atomic orbital electron populations 1.70191 1.08643 1.29118 1.28908 1.26913 0.95668 1.04272 0.92624 0.85330 0.79618 0.76797 0.79213 1.18020 1.18585 1.18751 1.19672 0.94060 0.90445 1.43300 0.90594 1.18769 0.88157 0.91797 0.88194 1.68690 1.07719 1.28287 1.18459 1.23038 0.99893 0.89095 0.93457 1.21513 0.94765 0.98418 1.18655 1.21118 0.94154 0.96033 0.94706 1.19179 0.90728 0.94503 1.19990 1.18530 0.93433 0.98989 0.90707 1.18129 0.90901 1.05092 0.80197 1.91451 1.81488 1.93996 1.45440 1.21336 0.90226 1.01159 1.01438 1.21496 1.02267 0.99937 0.88640 1.18186 0.86550 1.01488 0.87626 1.84833 1.74664 1.35308 1.35324 1.21592 0.92046 1.07020 0.87153 1.98342 1.77600 1.96673 1.30235 0.90893 0.84429 0.85394 0.86341 0.80743 0.79672 0.73001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.94 11.46 21.86 0.25 -40.69 16 2 C 0.03 1.46 5.50 85.32 0.47 1.93 16 3 Si 0.97 39.55 29.56 68.60 2.03 41.58 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 5 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 6 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 7 C -0.44 -24.53 8.78 23.35 0.21 -24.33 16 8 H 0.08 4.11 6.85 -2.91 -0.02 4.09 16 9 C 0.25 14.13 6.57 40.37 0.27 14.39 16 10 N -0.52 -29.42 7.85 -188.41 -1.48 -30.90 16 11 C 0.11 5.47 11.17 84.98 0.95 6.41 16 12 C -0.31 -13.66 10.10 22.50 0.23 -13.44 16 13 C -0.04 -1.60 9.92 22.66 0.22 -1.37 16 14 C -0.24 -11.56 4.08 -19.52 -0.08 -11.64 16 15 C -0.01 -0.59 3.89 -19.99 -0.08 -0.67 16 16 C 0.08 2.84 7.29 22.67 0.17 3.01 16 17 F -0.15 -6.02 16.83 44.97 0.76 -5.26 16 18 C -0.12 -3.24 10.01 22.27 0.22 -3.01 16 19 C -0.11 -2.40 9.98 22.44 0.22 -2.17 16 20 C 0.11 3.05 6.69 22.47 0.15 3.20 16 21 O -0.49 -11.44 12.95 -93.22 -1.21 -12.65 16 22 C -0.05 -1.86 6.36 22.69 0.14 -1.72 16 23 Cl -0.06 -2.21 27.58 -2.72 -0.08 -2.29 16 24 H 0.28 13.83 8.29 -92.71 -0.77 13.07 16 25 H 0.14 5.94 8.06 -2.91 -0.02 5.92 16 26 H 0.13 4.70 8.06 -2.91 -0.02 4.67 16 27 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 28 H 0.18 3.29 8.06 -2.91 -0.02 3.26 16 29 H 0.19 2.58 8.06 -2.91 -0.02 2.56 16 30 H 0.41 5.33 9.06 -74.05 -0.67 4.66 16 Total: -1.00 -69.27 292.39 3.91 -65.37 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.54 Total: 14.24 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: 3.09 Total: -29.39 kcal Atomic # 7 Polarization: -70.37 SS G_CDS: -1.23 Total: -71.60 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -1.21 Total: -12.65 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.76 Total: -5.26 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Atomic # 17 Polarization: -2.21 SS G_CDS: -0.08 Total: -2.29 kcal Total: -69.27 3.91 -65.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245831046.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.392 kcal (2) G-P(sol) polarization free energy of solvation -69.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds