Wall clock time and date at job start Tue Mar 31 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86798 * 120.00123 * 2 1 4 4 H 1.48503 * 109.46735 * 240.00417 * 3 2 1 5 5 H 1.48496 * 109.47123 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47201 * 120.00293 * 3 2 1 7 7 C 1.40032 * 119.99431 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99251 * 179.97438 * 7 2 1 9 9 C 1.41427 * 120.00696 * 359.97438 * 7 2 1 10 10 C 1.40454 * 119.78231 * 180.02562 * 9 7 2 11 11 C 1.39345 * 118.83612 * 179.70527 * 10 9 7 12 12 C 1.48321 * 120.82743 * 180.29883 * 11 10 9 13 13 C 1.39595 * 120.11649 * 64.96756 * 12 11 10 14 14 F 1.35099 * 120.02835 * 359.97438 * 13 12 11 15 15 C 1.38225 * 119.93779 * 179.77071 * 13 12 11 16 16 C 1.38265 * 120.17777 * 0.50743 * 15 13 12 17 17 C 1.38721 * 120.23847 * 359.74892 * 16 15 13 18 18 O 1.35969 * 119.97573 * 180.02562 * 17 16 15 19 19 C 1.38616 * 120.05134 * 359.97438 * 17 16 15 20 20 Cl 1.73606 * 120.08881 * 179.97438 * 19 17 16 21 21 C 1.40063 * 118.34826 * 0.53682 * 11 10 9 22 22 C 1.38489 * 119.42177 * 359.46055 * 21 11 10 23 23 N 1.31492 * 121.14930 * 0.27788 * 22 21 11 24 24 H 0.97006 * 119.99800 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.57930 * 359.95956 * 10 9 7 26 26 H 1.08007 * 119.90873 * 180.25597 * 15 13 12 27 27 H 1.08004 * 119.88126 * 179.72117 * 16 15 13 28 28 H 0.96697 * 113.99836 * 269.97204 * 18 17 16 29 29 H 1.08002 * 120.29105 * 179.73924 * 21 11 10 30 30 H 1.07995 * 119.42339 * 180.30304 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6963 -1.2126 5 1 1.2765 2.7464 0.0006 6 1 3.0952 1.6963 1.2124 7 6 2.0074 -1.2128 -0.0005 8 1 3.0875 -1.2127 -0.0010 9 6 1.3003 -2.4376 -0.0005 10 6 2.0072 -3.6513 -0.0005 11 6 1.2907 -4.8464 0.0057 12 6 1.9923 -6.1532 0.0126 13 6 2.7737 -6.5229 1.1087 14 9 2.8928 -5.6900 2.1658 15 6 3.4220 -7.7436 1.1133 16 6 3.3073 -8.5956 0.0304 17 6 2.5370 -8.2334 -1.0649 18 8 2.4274 -9.0756 -2.1268 19 6 1.8780 -7.0139 -1.0774 20 17 0.9143 -6.5593 -2.4479 21 6 -0.1085 -4.7830 0.0002 22 6 -0.7335 -3.5471 0.0002 23 7 -0.0362 -2.4323 -0.0002 24 1 -0.4850 0.8401 0.0004 25 1 3.0872 -3.6581 -0.0012 26 1 4.0232 -8.0309 1.9634 27 1 3.8196 -9.5464 0.0371 28 1 3.1022 -8.9415 -2.8063 29 1 -0.6949 -5.6899 0.0006 30 1 -1.8123 -3.4982 0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245831098.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:28 Heat of formation + Delta-G solvation = -35.294590 kcal Electronic energy + Delta-G solvation = -20159.928587 eV Core-core repulsion = 16667.680235 eV Total energy + Delta-G solvation = -3492.248351 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.63551 -39.74988 -38.15370 -36.58583 -36.17204 -33.73835 -32.32436 -30.04289 -29.57267 -28.64133 -25.72292 -23.58564 -22.68007 -21.37654 -20.82034 -18.52944 -17.59660 -17.05379 -16.84760 -15.84844 -15.33589 -15.18055 -14.72622 -14.51147 -14.22056 -13.97892 -13.78857 -13.28639 -12.81688 -12.44956 -12.33868 -12.12018 -11.73750 -11.26333 -11.20948 -11.16117 -10.93192 -10.84040 -10.53641 -10.41431 -10.01628 -9.40200 -8.87564 -8.49369 -8.01528 -7.67369 -7.61138 -6.42432 -4.54847 0.92807 0.97537 2.26464 2.72981 2.76373 3.07618 3.09736 3.17718 3.32351 3.93369 3.99062 4.32043 4.68704 4.71651 4.90306 5.11788 5.44435 5.69720 5.83472 5.93721 6.00197 6.04509 6.08971 6.43296 6.61819 6.66159 6.81548 7.08392 7.25783 7.43193 7.46558 7.58838 7.92024 8.19259 8.61712 8.87820 10.07835 10.29743 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.022577 B = 0.004787 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.919306 B = 5848.097481 C = 6351.785520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.069 3.931 3 Si 0.908 3.092 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.431 4.431 8 H 0.083 0.917 9 C 0.256 3.744 10 C -0.238 4.238 11 C -0.010 4.010 12 C -0.029 4.029 13 C 0.112 3.888 14 F -0.122 7.122 15 C -0.138 4.138 16 C -0.117 4.117 17 C 0.099 3.901 18 O -0.485 6.485 19 C -0.030 4.030 20 Cl -0.033 7.033 21 C -0.285 4.285 22 C 0.126 3.874 23 N -0.478 5.478 24 H 0.274 0.726 25 H 0.098 0.902 26 H 0.144 0.856 27 H 0.144 0.856 28 H 0.390 0.610 29 H 0.095 0.905 30 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.907 -12.670 -1.583 14.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.156 4.156 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.462 4.462 8 H 0.101 0.899 9 C 0.132 3.868 10 C -0.261 4.261 11 C -0.016 4.016 12 C -0.031 4.031 13 C 0.092 3.908 14 F -0.100 7.100 15 C -0.157 4.157 16 C -0.136 4.136 17 C 0.053 3.947 18 O -0.295 6.295 19 C -0.058 4.058 20 Cl -0.004 7.004 21 C -0.308 4.308 22 C -0.040 4.040 23 N -0.191 5.191 24 H 0.085 0.915 25 H 0.117 0.883 26 H 0.161 0.839 27 H 0.161 0.839 28 H 0.246 0.754 29 H 0.113 0.887 30 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.737 -11.833 -1.366 12.819 hybrid contribution 1.139 0.133 -0.192 1.163 sum 5.876 -11.700 -1.558 13.185 Atomic orbital electron populations 1.70122 1.07171 1.27920 1.28390 1.26055 0.94911 1.01038 0.93604 0.86389 0.80099 0.80446 0.79909 1.18926 1.20172 1.18906 1.19575 0.94215 0.89349 1.43044 0.89890 1.18492 0.88317 0.91473 0.88565 1.21716 0.98291 0.92231 1.13908 1.18204 0.93300 0.89067 1.01028 1.18920 0.96921 0.95612 0.91608 1.17592 0.98975 0.89172 0.85069 1.91557 1.94179 1.70700 1.53578 1.21000 1.01633 0.92831 1.00284 1.21083 0.99142 1.00420 0.92914 1.18037 0.98231 0.88327 0.90114 1.84870 1.56781 1.56748 1.31092 1.21255 0.99222 0.93842 0.91457 1.98388 1.69117 1.92271 1.40640 1.21186 0.92596 0.98121 1.18939 1.22431 0.98827 0.88451 0.94251 1.68728 1.07167 1.26767 1.16435 0.91513 0.88335 0.83858 0.83851 0.75387 0.88699 0.86151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.05 11.46 55.55 0.64 -18.41 16 2 C 0.07 1.77 5.50 -17.34 -0.10 1.67 16 3 Si 0.91 18.58 29.56 -169.99 -5.02 13.55 16 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.43 -11.53 9.14 -37.70 -0.34 -11.88 16 8 H 0.08 2.07 7.85 -52.48 -0.41 1.66 16 9 C 0.26 7.02 6.55 -85.02 -0.56 6.46 16 10 C -0.24 -5.88 9.42 -38.34 -0.36 -6.24 16 11 C -0.01 -0.22 4.36 -104.65 -0.46 -0.67 16 12 C -0.03 -0.54 5.38 -104.82 -0.56 -1.10 16 13 C 0.11 1.87 7.25 -39.08 -0.28 1.59 16 14 F -0.12 -2.27 16.69 2.25 0.04 -2.23 16 15 C -0.14 -1.74 10.01 -39.58 -0.40 -2.13 16 16 C -0.12 -1.32 9.97 -39.39 -0.39 -1.72 16 17 C 0.10 1.31 6.69 -39.26 -0.26 1.05 16 18 O -0.49 -5.46 12.96 -19.64 -0.25 -5.71 16 19 C -0.03 -0.50 6.34 -39.02 -0.25 -0.74 16 20 Cl -0.03 -0.57 26.88 -51.86 -1.39 -1.96 16 21 C -0.29 -6.44 9.00 -38.80 -0.35 -6.79 16 22 C 0.13 3.06 11.17 -17.60 -0.20 2.86 16 23 N -0.48 -13.20 7.85 -11.21 -0.09 -13.29 16 24 H 0.27 6.62 8.29 -40.82 -0.34 6.28 16 25 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 26 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 27 H 0.14 1.16 8.06 -52.48 -0.42 0.73 16 28 H 0.39 2.60 9.06 45.56 0.41 3.01 16 29 H 0.09 1.96 8.06 -52.49 -0.42 1.54 16 30 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 292.97 15.07 4.42 4.42 Total: -1.00 -30.58 292.97 -7.42 -38.01 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -1.25 Total: 3.26 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -4.51 Total: -17.64 kcal Atomic # 7 Polarization: -32.25 SS G_CDS: 0.55 Total: -31.70 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.25 Total: -5.71 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.55 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.39 Total: -1.96 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.58 -7.42 -38.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245831098.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.714 kcal (2) G-P(sol) polarization free energy of solvation -30.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds