Wall clock time and date at job start Tue Mar 31 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86798 * 120.00123 * 2 1 4 4 H 1.48503 * 109.46735 * 240.00417 * 3 2 1 5 5 H 1.48496 * 109.47123 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47201 * 120.00293 * 3 2 1 7 7 C 1.40032 * 119.99431 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99251 * 179.97438 * 7 2 1 9 9 C 1.41427 * 120.00696 * 359.97438 * 7 2 1 10 10 C 1.40454 * 119.78231 * 180.02562 * 9 7 2 11 11 C 1.39345 * 118.83612 * 179.70527 * 10 9 7 12 12 C 1.48321 * 120.82743 * 180.29883 * 11 10 9 13 13 C 1.39595 * 120.11649 * 64.96756 * 12 11 10 14 14 F 1.35099 * 120.02835 * 359.97438 * 13 12 11 15 15 C 1.38225 * 119.93779 * 179.77071 * 13 12 11 16 16 C 1.38265 * 120.17777 * 0.50743 * 15 13 12 17 17 C 1.38721 * 120.23847 * 359.74892 * 16 15 13 18 18 O 1.35969 * 119.97573 * 180.02562 * 17 16 15 19 19 C 1.38616 * 120.05134 * 359.97438 * 17 16 15 20 20 Cl 1.73606 * 120.08881 * 179.97438 * 19 17 16 21 21 C 1.40063 * 118.34826 * 0.53682 * 11 10 9 22 22 C 1.38489 * 119.42177 * 359.46055 * 21 11 10 23 23 N 1.31492 * 121.14930 * 0.27788 * 22 21 11 24 24 H 0.97006 * 119.99800 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.57930 * 359.95956 * 10 9 7 26 26 H 1.08007 * 119.90873 * 180.25597 * 15 13 12 27 27 H 1.08004 * 119.88126 * 179.72117 * 16 15 13 28 28 H 0.96697 * 113.99836 * 269.97204 * 18 17 16 29 29 H 1.08002 * 120.29105 * 179.73924 * 21 11 10 30 30 H 1.07995 * 119.42339 * 180.30304 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6963 -1.2126 5 1 1.2765 2.7464 0.0006 6 1 3.0952 1.6963 1.2124 7 6 2.0074 -1.2128 -0.0005 8 1 3.0875 -1.2127 -0.0010 9 6 1.3003 -2.4376 -0.0005 10 6 2.0072 -3.6513 -0.0005 11 6 1.2907 -4.8464 0.0057 12 6 1.9923 -6.1532 0.0126 13 6 2.7737 -6.5229 1.1087 14 9 2.8928 -5.6900 2.1658 15 6 3.4220 -7.7436 1.1133 16 6 3.3073 -8.5956 0.0304 17 6 2.5370 -8.2334 -1.0649 18 8 2.4274 -9.0756 -2.1268 19 6 1.8780 -7.0139 -1.0774 20 17 0.9143 -6.5593 -2.4479 21 6 -0.1085 -4.7830 0.0002 22 6 -0.7335 -3.5471 0.0002 23 7 -0.0362 -2.4323 -0.0002 24 1 -0.4850 0.8401 0.0004 25 1 3.0872 -3.6581 -0.0012 26 1 4.0232 -8.0309 1.9634 27 1 3.8196 -9.5464 0.0371 28 1 3.1022 -8.9415 -2.8063 29 1 -0.6949 -5.6899 0.0006 30 1 -1.8123 -3.4982 0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245831098.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:28 Heat of formation + Delta-G solvation = -54.663076 kcal Electronic energy + Delta-G solvation = -20160.768467 eV Core-core repulsion = 16667.680235 eV Total energy + Delta-G solvation = -3493.088232 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.95884 -40.92307 -39.89580 -37.70722 -37.39534 -35.57945 -33.86673 -31.96188 -30.86215 -29.96921 -27.66024 -24.97877 -23.90866 -23.15392 -22.42483 -19.84787 -18.84028 -18.59200 -18.04868 -17.47215 -16.77955 -16.47677 -16.26132 -16.00804 -15.89345 -15.60460 -14.91723 -14.49099 -14.39197 -14.09484 -13.94173 -13.62124 -13.10534 -12.87274 -12.78184 -12.76724 -12.37512 -12.22268 -12.09459 -11.81237 -11.60496 -11.22754 -10.37749 -9.74455 -9.62094 -9.55950 -9.50609 -8.31953 -6.55200 -0.20481 -0.17328 0.86589 0.97756 1.04207 1.39404 1.52255 1.53408 2.20501 2.22577 2.80551 2.98678 3.18392 3.50754 3.77343 3.88786 4.06223 4.17064 4.31588 4.60202 4.63858 4.75481 4.83420 4.92177 4.97799 5.01073 5.17455 5.39411 5.48673 5.60875 5.74366 6.04417 6.22833 6.68291 6.69280 6.90974 8.13765 8.43177 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.022577 B = 0.004787 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.919306 B = 5848.097481 C = 6351.785520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.025 3.975 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.469 4.469 8 H 0.087 0.913 9 C 0.226 3.774 10 C -0.259 4.259 11 C 0.004 3.996 12 C -0.066 4.066 13 C 0.087 3.913 14 F -0.142 7.142 15 C -0.117 4.117 16 C -0.092 4.092 17 C 0.114 3.886 18 O -0.486 6.486 19 C -0.046 4.046 20 Cl -0.050 7.050 21 C -0.280 4.280 22 C 0.108 3.892 23 N -0.514 5.514 24 H 0.280 0.720 25 H 0.099 0.901 26 H 0.181 0.819 27 H 0.192 0.808 28 H 0.413 0.587 29 H 0.114 0.886 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.661 -15.019 -1.556 16.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.197 4.197 3 Si 0.807 3.193 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.500 4.500 8 H 0.105 0.895 9 C 0.101 3.899 10 C -0.282 4.282 11 C -0.003 4.003 12 C -0.067 4.067 13 C 0.067 3.933 14 F -0.121 7.121 15 C -0.135 4.135 16 C -0.110 4.110 17 C 0.067 3.933 18 O -0.300 6.300 19 C -0.073 4.073 20 Cl -0.021 7.021 21 C -0.302 4.302 22 C -0.056 4.056 23 N -0.227 5.227 24 H 0.091 0.909 25 H 0.117 0.883 26 H 0.198 0.802 27 H 0.209 0.791 28 H 0.273 0.727 29 H 0.132 0.868 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.495 -14.214 -1.358 15.686 hybrid contribution 0.604 0.565 -0.238 0.861 sum 7.099 -13.649 -1.596 15.467 Atomic orbital electron populations 1.70222 1.08898 1.29262 1.29336 1.26997 0.95752 1.04530 0.92433 0.85188 0.78640 0.75319 0.80108 1.18216 1.19066 1.18278 1.19943 0.94699 0.90425 1.44907 0.89461 1.18923 0.88827 0.92867 0.89250 1.21768 0.98412 0.92643 1.15363 1.18481 0.93327 0.90523 0.97965 1.18786 0.99291 0.94698 0.93965 1.17949 1.00234 0.90723 0.84376 1.91505 1.94467 1.71694 1.54391 1.21408 0.99958 0.90594 1.01583 1.21594 0.97136 1.01398 0.90849 1.18148 0.96906 0.86897 0.91304 1.84823 1.58136 1.55654 1.31341 1.21417 1.00317 0.95047 0.90555 1.98378 1.69772 1.92595 1.41326 1.21420 0.93222 0.98108 1.17490 1.22855 0.99846 0.88706 0.94209 1.68681 1.07639 1.28354 1.18065 0.90941 0.88261 0.80164 0.79105 0.72657 0.86771 0.84258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -41.77 11.46 21.84 0.25 -41.52 16 2 C 0.02 1.29 5.50 85.29 0.47 1.76 16 3 Si 0.99 38.86 29.56 68.60 2.03 40.89 16 4 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 5 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 6 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 7 C -0.47 -26.27 9.14 23.49 0.21 -26.06 16 8 H 0.09 4.58 7.85 -2.91 -0.02 4.55 16 9 C 0.23 13.04 6.55 40.19 0.26 13.30 16 10 C -0.26 -13.39 9.42 23.08 0.22 -13.17 16 11 C 0.00 0.16 4.36 -19.88 -0.09 0.08 16 12 C -0.07 -2.42 5.38 -20.00 -0.11 -2.53 16 13 C 0.09 2.79 7.25 22.59 0.16 2.95 16 14 F -0.14 -5.30 16.69 44.97 0.75 -4.54 16 15 C -0.12 -2.44 10.01 22.27 0.22 -2.21 16 16 C -0.09 -1.57 9.97 22.39 0.22 -1.35 16 17 C 0.11 2.59 6.69 22.48 0.15 2.74 16 18 O -0.49 -8.92 12.96 -93.20 -1.21 -10.13 16 19 C -0.05 -1.44 6.34 22.63 0.14 -1.29 16 20 Cl -0.05 -1.66 26.88 -2.72 -0.07 -1.74 16 21 C -0.28 -12.89 9.00 22.77 0.20 -12.68 16 22 C 0.11 5.44 11.17 84.80 0.95 6.38 16 23 N -0.51 -29.74 7.85 -189.38 -1.49 -31.22 16 24 H 0.28 13.97 8.29 -92.70 -0.77 13.20 16 25 H 0.10 4.92 8.06 -2.91 -0.02 4.90 16 26 H 0.18 2.45 8.06 -2.91 -0.02 2.42 16 27 H 0.19 1.60 8.06 -2.91 -0.02 1.58 16 28 H 0.41 3.74 9.06 -74.06 -0.67 3.07 16 29 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 30 H 0.14 6.23 8.06 -2.91 -0.02 6.20 16 Total: -1.00 -70.92 292.97 3.83 -67.09 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.54 Total: 13.26 kcal Atomic # 6 Polarization: -35.11 SS G_CDS: 3.03 Total: -32.08 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -1.24 Total: -72.75 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -1.21 Total: -10.13 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.75 Total: -4.54 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -0.07 Total: -1.74 kcal Total: -70.92 3.83 -67.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245831098.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.424 kcal (2) G-P(sol) polarization free energy of solvation -70.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds