Wall clock time and date at job start Tue Mar 31 2020 06:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30690 * 1 3 3 Si 1.86804 * 120.00351 * 2 1 4 4 H 1.48494 * 109.47389 * 270.00115 * 3 2 1 5 5 H 1.48500 * 109.46870 * 30.00248 * 3 2 1 6 6 H 1.48499 * 109.46901 * 149.99819 * 3 2 1 7 7 C 1.40167 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00335 * 163.43849 * 7 2 1 9 9 C 1.40894 * 119.99841 * 343.44634 * 7 2 1 10 10 C 1.41139 * 121.10666 * 335.68647 * 9 7 2 11 11 C 1.36455 * 119.10852 * 180.02562 * 10 9 7 12 12 N 1.32234 * 121.52428 * 0.02562 * 11 10 9 13 13 C 1.31658 * 122.50484 * 359.71537 * 12 11 10 14 14 C 1.39361 * 120.65282 * 0.54804 * 13 12 11 15 15 C 1.47768 * 120.78378 * 179.75125 * 14 13 12 16 16 C 1.39963 * 120.14510 * 89.72301 * 15 14 13 17 17 F 1.35095 * 120.04938 * 0.25239 * 16 15 14 18 18 C 1.38135 * 119.90127 * 179.97438 * 16 15 14 19 19 C 1.38339 * 120.20735 * 359.97438 * 18 16 15 20 20 C 1.38824 * 120.29921 * 0.02562 * 19 18 16 21 21 O 1.35974 * 119.95249 * 179.97438 * 20 19 18 22 22 C 1.38500 * 120.09400 * 0.02562 * 20 19 18 23 23 Cl 1.73592 * 120.10597 * 180.02562 * 22 20 19 24 24 H 0.97002 * 119.99837 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.44616 * 0.02562 * 10 9 7 26 26 H 1.07995 * 119.24271 * 179.97438 * 11 10 9 27 27 H 1.07995 * 119.66815 * 180.28027 * 13 12 11 28 28 H 1.08000 * 119.89806 * 180.02562 * 18 16 15 29 29 H 1.08001 * 119.84879 * 180.02562 * 19 18 16 30 30 H 0.96704 * 113.99354 * 90.00055 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 2.4885 2.0464 -1.4000 5 1 1.4385 2.6526 0.7001 6 1 3.5385 1.4400 0.7001 7 6 2.0077 -1.2139 -0.0005 8 1 3.0541 -1.2332 -0.2671 9 6 1.3470 -2.4089 0.3466 10 6 0.1939 -2.3947 1.1603 11 6 -0.4134 -3.5763 1.4717 12 7 0.0540 -4.7315 1.0294 13 6 1.1212 -4.8162 0.2631 14 6 1.8206 -3.6700 -0.1102 15 6 3.0220 -3.7622 -0.9657 16 6 2.8985 -3.7093 -2.3588 17 9 1.6801 -3.5687 -2.9252 18 6 4.0250 -3.7954 -3.1537 19 6 5.2749 -3.9332 -2.5771 20 6 5.4071 -3.9865 -1.1962 21 8 6.6390 -4.1226 -0.6369 22 6 4.2859 -3.9024 -0.3874 23 17 4.4510 -3.9685 1.3394 24 1 -0.4850 0.8401 0.0004 25 1 -0.2025 -1.4612 1.5315 26 1 -1.2956 -3.5680 2.0946 27 1 1.4604 -5.7838 -0.0760 28 1 3.9297 -3.7542 -4.2287 29 1 6.1518 -3.9995 -3.2041 30 1 7.0806 -3.2829 -0.4494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245832074.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:30 Heat of formation + Delta-G solvation = -47.563689 kcal Electronic energy + Delta-G solvation = -20830.724822 eV Core-core repulsion = 17337.944442 eV Total energy + Delta-G solvation = -3492.780379 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.28005 -39.46607 -38.26217 -36.29338 -35.88238 -34.26053 -32.16042 -30.29718 -29.22008 -28.27257 -26.05810 -23.24974 -22.28370 -21.61419 -20.61266 -18.06058 -17.62797 -17.23969 -16.52585 -15.72432 -15.49919 -14.92098 -14.57498 -14.44890 -14.32965 -13.93289 -13.48651 -12.98618 -12.75044 -12.45643 -12.27104 -12.14661 -11.58712 -11.52743 -11.33119 -11.10672 -10.87708 -10.74278 -10.46174 -10.30472 -9.89618 -9.53226 -8.53751 -8.19008 -8.08124 -7.86621 -7.68390 -6.98672 -4.73153 1.25343 1.36319 2.54580 2.56852 2.73700 2.93803 2.97705 3.17824 3.60349 3.74624 4.27233 4.53629 4.65584 5.01921 5.18176 5.43803 5.55385 5.75188 5.82798 6.06689 6.23405 6.26229 6.38957 6.46457 6.77218 6.81869 6.97910 7.03046 7.24590 7.39702 7.68120 7.71156 7.97916 8.31716 8.58759 8.63091 9.55855 9.90946 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.012807 B = 0.008087 C = 0.006942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.826382 B = 3461.493458 C = 4032.181135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.080 3.920 3 Si 0.908 3.092 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.440 4.440 8 H 0.080 0.920 9 C 0.160 3.840 10 C -0.208 4.208 11 C 0.085 3.915 12 N -0.576 5.576 13 C 0.144 3.856 14 C -0.248 4.248 15 C 0.020 3.980 16 C 0.112 3.888 17 F -0.124 7.124 18 C -0.143 4.143 19 C -0.124 4.124 20 C 0.094 3.906 21 O -0.488 6.488 22 C -0.032 4.032 23 Cl -0.043 7.043 24 H 0.286 0.714 25 H 0.127 0.873 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.975 -0.996 -3.425 9.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.470 4.470 8 H 0.098 0.902 9 C 0.152 3.848 10 C -0.230 4.230 11 C -0.062 4.062 12 N -0.290 5.290 13 C -0.015 4.015 14 C -0.253 4.253 15 C 0.017 3.983 16 C 0.092 3.908 17 F -0.103 7.103 18 C -0.162 4.162 19 C -0.143 4.143 20 C 0.048 3.952 21 O -0.298 6.298 22 C -0.060 4.060 23 Cl -0.014 7.014 24 H 0.097 0.903 25 H 0.145 0.855 26 H 0.136 0.864 27 H 0.136 0.864 28 H 0.156 0.844 29 H 0.157 0.843 30 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 8.110 -2.190 -3.055 8.939 hybrid contribution 0.673 2.209 -0.245 2.322 sum 8.783 0.019 -3.300 9.383 Atomic orbital electron populations 1.69744 1.07790 1.29951 1.32293 1.26016 0.94753 1.01664 0.91743 0.86296 0.80849 0.80154 0.79584 1.19139 1.19710 1.18088 1.19475 0.97650 0.90730 1.39188 0.90189 1.17571 0.89970 0.90603 0.86615 1.21889 1.00067 0.98354 1.02732 1.21723 0.97956 0.88787 0.97731 1.67334 1.15639 1.28768 1.17304 1.21936 0.90896 0.95400 0.93263 1.19092 1.00419 0.95638 1.10192 1.18494 0.92643 0.96110 0.91058 1.17768 0.80622 1.02073 0.90313 1.91518 1.41482 1.92770 1.84509 1.20940 0.91074 1.03712 1.00444 1.21005 0.97562 1.02521 0.93167 1.18033 0.84094 1.02924 0.90150 1.84852 1.27794 1.34583 1.82532 1.21423 0.93312 1.05245 0.85993 1.98355 1.97790 1.96389 1.08874 0.90275 0.85535 0.86369 0.86401 0.84387 0.84337 0.75683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.79 10.93 55.56 0.61 -18.18 16 2 C 0.08 1.88 5.20 -17.31 -0.09 1.79 16 3 Si 0.91 17.59 29.59 -169.99 -5.03 12.56 16 4 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 7 C -0.44 -10.93 8.58 -37.85 -0.32 -11.26 16 8 H 0.08 1.95 7.35 -52.49 -0.39 1.56 16 9 C 0.16 4.05 5.62 -106.25 -0.60 3.46 16 10 C -0.21 -5.24 8.73 -39.12 -0.34 -5.58 16 11 C 0.09 2.04 11.09 -18.02 -0.20 1.84 16 12 N -0.58 -14.01 10.32 -13.36 -0.14 -14.15 16 13 C 0.14 3.36 10.96 -17.21 -0.19 3.17 16 14 C -0.25 -5.80 4.08 -104.04 -0.42 -6.23 16 15 C 0.02 0.40 4.22 -104.81 -0.44 -0.04 16 16 C 0.11 2.14 7.29 -38.97 -0.28 1.86 16 17 F -0.12 -2.62 16.83 2.25 0.04 -2.59 16 18 C -0.14 -2.13 10.01 -39.58 -0.40 -2.53 16 19 C -0.12 -1.68 9.98 -39.33 -0.39 -2.08 16 20 C 0.09 1.45 6.69 -39.27 -0.26 1.18 16 21 O -0.49 -6.45 12.95 -19.66 -0.25 -6.71 16 22 C -0.03 -0.59 6.36 -38.94 -0.25 -0.84 16 23 Cl -0.04 -0.81 27.58 -51.86 -1.43 -2.24 16 24 H 0.29 6.27 8.29 -40.82 -0.34 5.94 16 25 H 0.13 3.21 6.22 -52.49 -0.33 2.88 16 26 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 27 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 28 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.39 3.45 9.06 45.56 0.41 3.86 16 LS Contribution 291.46 15.07 4.39 4.39 Total: -1.00 -28.40 291.46 -7.13 -35.53 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -1.12 Total: 6.64 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -4.19 Total: -15.25 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.47 Total: -32.33 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.25 Total: -6.71 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.04 Total: -2.59 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.56 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.43 Total: -2.24 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.40 -7.13 -35.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245832074.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.035 kcal (2) G-P(sol) polarization free energy of solvation -28.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds