Wall clock time and date at job start Tue Mar 31 2020 06:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30690 * 1 3 3 Si 1.86804 * 120.00351 * 2 1 4 4 H 1.48494 * 109.47389 * 270.00115 * 3 2 1 5 5 H 1.48500 * 109.46870 * 30.00248 * 3 2 1 6 6 H 1.48499 * 109.46901 * 149.99819 * 3 2 1 7 7 C 1.40167 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00335 * 163.43849 * 7 2 1 9 9 C 1.40894 * 119.99841 * 343.44634 * 7 2 1 10 10 C 1.41139 * 121.10666 * 335.68647 * 9 7 2 11 11 C 1.36455 * 119.10852 * 180.02562 * 10 9 7 12 12 N 1.32234 * 121.52428 * 0.02562 * 11 10 9 13 13 C 1.31658 * 122.50484 * 359.71537 * 12 11 10 14 14 C 1.39361 * 120.65282 * 0.54804 * 13 12 11 15 15 C 1.47768 * 120.78378 * 179.75125 * 14 13 12 16 16 C 1.39963 * 120.14510 * 89.72301 * 15 14 13 17 17 F 1.35095 * 120.04938 * 0.25239 * 16 15 14 18 18 C 1.38135 * 119.90127 * 179.97438 * 16 15 14 19 19 C 1.38339 * 120.20735 * 359.97438 * 18 16 15 20 20 C 1.38824 * 120.29921 * 0.02562 * 19 18 16 21 21 O 1.35974 * 119.95249 * 179.97438 * 20 19 18 22 22 C 1.38500 * 120.09400 * 0.02562 * 20 19 18 23 23 Cl 1.73592 * 120.10597 * 180.02562 * 22 20 19 24 24 H 0.97002 * 119.99837 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.44616 * 0.02562 * 10 9 7 26 26 H 1.07995 * 119.24271 * 179.97438 * 11 10 9 27 27 H 1.07995 * 119.66815 * 180.28027 * 13 12 11 28 28 H 1.08000 * 119.89806 * 180.02562 * 18 16 15 29 29 H 1.08001 * 119.84879 * 180.02562 * 19 18 16 30 30 H 0.96704 * 113.99354 * 90.00055 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 2.4885 2.0464 -1.4000 5 1 1.4385 2.6526 0.7001 6 1 3.5385 1.4400 0.7001 7 6 2.0077 -1.2139 -0.0005 8 1 3.0541 -1.2332 -0.2671 9 6 1.3470 -2.4089 0.3466 10 6 0.1939 -2.3947 1.1603 11 6 -0.4134 -3.5763 1.4717 12 7 0.0540 -4.7315 1.0294 13 6 1.1212 -4.8162 0.2631 14 6 1.8206 -3.6700 -0.1102 15 6 3.0220 -3.7622 -0.9657 16 6 2.8985 -3.7093 -2.3588 17 9 1.6801 -3.5687 -2.9252 18 6 4.0250 -3.7954 -3.1537 19 6 5.2749 -3.9332 -2.5771 20 6 5.4071 -3.9865 -1.1962 21 8 6.6390 -4.1226 -0.6369 22 6 4.2859 -3.9024 -0.3874 23 17 4.4510 -3.9685 1.3394 24 1 -0.4850 0.8401 0.0004 25 1 -0.2025 -1.4612 1.5315 26 1 -1.2956 -3.5680 2.0946 27 1 1.4604 -5.7838 -0.0760 28 1 3.9297 -3.7542 -4.2287 29 1 6.1518 -3.9995 -3.2041 30 1 7.0806 -3.2829 -0.4494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245832074.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:30 Heat of formation + Delta-G solvation = -64.801589 kcal Electronic energy + Delta-G solvation = -20831.472313 eV Core-core repulsion = 17337.944442 eV Total energy + Delta-G solvation = -3493.527871 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.78075 -40.82593 -39.92909 -37.53826 -37.24213 -36.06956 -33.70892 -32.10107 -30.61060 -29.76590 -27.86931 -24.75279 -23.59552 -23.43729 -22.18458 -19.56505 -19.16529 -18.61417 -17.87273 -17.49773 -16.89831 -16.38846 -16.26815 -16.06206 -15.80898 -15.40078 -14.79649 -14.46012 -14.30463 -14.18601 -13.93787 -13.58937 -13.23993 -13.09629 -12.85435 -12.70101 -12.21417 -12.07617 -12.01499 -11.86303 -11.44506 -11.27878 -10.12544 -9.94495 -9.61318 -9.52616 -9.38421 -8.75604 -6.59604 -0.02364 0.06917 0.74794 0.97111 1.19829 1.35145 1.47393 1.54253 2.13444 2.34595 2.72001 3.12426 3.35085 3.61774 3.78227 3.97001 4.04611 4.20936 4.41895 4.58470 4.83883 4.94416 4.96990 5.03809 5.11778 5.12809 5.20317 5.41547 5.51290 5.68590 5.86754 6.13026 6.45826 6.74592 6.75021 6.77962 7.68447 8.17235 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.012807 B = 0.008087 C = 0.006942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.826382 B = 3461.493458 C = 4032.181135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.041 3.959 3 Si 0.977 3.023 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.255 1.255 7 C -0.459 4.459 8 H 0.079 0.921 9 C 0.134 3.866 10 C -0.232 4.232 11 C 0.079 3.921 12 N -0.589 5.589 13 C 0.126 3.874 14 C -0.238 4.238 15 C -0.013 4.013 16 C 0.080 3.920 17 F -0.146 7.146 18 C -0.124 4.124 19 C -0.103 4.103 20 C 0.108 3.892 21 O -0.488 6.488 22 C -0.050 4.050 23 Cl -0.057 7.057 24 H 0.295 0.705 25 H 0.117 0.883 26 H 0.141 0.859 27 H 0.134 0.866 28 H 0.174 0.826 29 H 0.186 0.814 30 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.568 -0.421 -4.945 12.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.178 4.178 3 Si 0.797 3.203 4 H -0.184 1.184 5 H -0.188 1.188 6 H -0.178 1.178 7 C -0.489 4.489 8 H 0.097 0.903 9 C 0.126 3.874 10 C -0.254 4.254 11 C -0.068 4.068 12 N -0.304 5.304 13 C -0.031 4.031 14 C -0.244 4.244 15 C -0.016 4.016 16 C 0.061 3.939 17 F -0.125 7.125 18 C -0.142 4.142 19 C -0.121 4.121 20 C 0.062 3.938 21 O -0.301 6.301 22 C -0.077 4.077 23 Cl -0.028 7.028 24 H 0.106 0.894 25 H 0.135 0.865 26 H 0.158 0.842 27 H 0.152 0.848 28 H 0.191 0.809 29 H 0.203 0.797 30 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 10.721 -1.629 -4.577 11.770 hybrid contribution -0.034 1.961 0.183 1.969 sum 10.687 0.332 -4.394 11.560 Atomic orbital electron populations 1.69786 1.09191 1.31341 1.32498 1.26860 0.95454 1.04700 0.90806 0.85267 0.79456 0.75753 0.79862 1.18356 1.18753 1.17822 1.19626 0.97675 0.91478 1.40084 0.90338 1.17933 0.90427 0.91889 0.87131 1.21916 1.01120 0.98390 1.03984 1.22037 0.98542 0.88437 0.97829 1.67366 1.16265 1.28857 1.17921 1.22286 0.90986 0.96409 0.93407 1.19319 1.01052 0.94739 1.09243 1.18459 0.92390 0.99120 0.91625 1.18130 0.81163 1.04369 0.90288 1.91456 1.43071 1.93289 1.84687 1.21325 0.89904 1.01163 1.01829 1.21488 0.98477 0.99582 0.92566 1.18149 0.83983 1.01041 0.90672 1.84803 1.26528 1.36324 1.82411 1.21566 0.93736 1.06773 0.85673 1.98343 1.97766 1.96570 1.10095 0.89436 0.86506 0.84179 0.84838 0.80903 0.79677 0.73058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.78 10.93 21.86 0.24 -39.54 16 2 C 0.04 1.93 5.20 85.33 0.44 2.37 16 3 Si 0.98 35.63 29.59 68.60 2.03 37.66 16 4 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 5 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 6 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 7 C -0.46 -23.23 8.58 23.39 0.20 -23.03 16 8 H 0.08 3.87 7.35 -2.91 -0.02 3.85 16 9 C 0.13 7.00 5.62 -20.92 -0.12 6.88 16 10 C -0.23 -12.13 8.73 22.57 0.20 -11.94 16 11 C 0.08 3.92 11.09 84.22 0.93 4.85 16 12 N -0.59 -29.38 10.32 -196.18 -2.02 -31.41 16 13 C 0.13 6.06 10.96 84.99 0.93 6.99 16 14 C -0.24 -11.44 4.08 -19.49 -0.08 -11.52 16 15 C -0.01 -0.55 4.22 -19.99 -0.08 -0.64 16 16 C 0.08 3.00 7.29 22.66 0.17 3.16 16 17 F -0.15 -6.25 16.83 44.97 0.76 -5.49 16 18 C -0.12 -3.26 10.01 22.27 0.22 -3.04 16 19 C -0.10 -2.31 9.98 22.43 0.22 -2.09 16 20 C 0.11 2.98 6.69 22.47 0.15 3.13 16 21 O -0.49 -11.07 12.95 -93.25 -1.21 -12.28 16 22 C -0.05 -1.79 6.36 22.69 0.14 -1.65 16 23 Cl -0.06 -2.10 27.58 -2.72 -0.08 -2.18 16 24 H 0.29 13.07 8.29 -92.71 -0.77 12.30 16 25 H 0.12 6.21 6.22 -2.91 -0.02 6.19 16 26 H 0.14 6.05 8.06 -2.91 -0.02 6.02 16 27 H 0.13 5.80 8.06 -2.91 -0.02 5.77 16 28 H 0.17 3.33 8.06 -2.91 -0.02 3.30 16 29 H 0.19 2.52 8.06 -2.91 -0.02 2.50 16 30 H 0.41 5.66 9.06 -74.05 -0.67 4.99 16 Total: -1.00 -63.62 291.46 3.60 -60.03 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.55 Total: 19.73 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: 3.33 Total: -26.51 kcal Atomic # 7 Polarization: -69.17 SS G_CDS: -1.79 Total: -70.95 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -1.21 Total: -12.28 kcal Atomic # 9 Polarization: -6.25 SS G_CDS: 0.76 Total: -5.49 kcal Atomic # 14 Polarization: 35.63 SS G_CDS: 2.03 Total: 37.66 kcal Atomic # 17 Polarization: -2.10 SS G_CDS: -0.08 Total: -2.18 kcal Total: -63.62 3.60 -60.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245832074.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.774 kcal (2) G-P(sol) polarization free energy of solvation -63.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds