Wall clock time and date at job start Tue Mar 31 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86800 * 119.99649 * 2 1 4 4 H 1.48501 * 109.47090 * 270.27255 * 3 2 1 5 5 H 1.48495 * 109.47520 * 30.27597 * 3 2 1 6 6 H 1.48507 * 109.46786 * 150.27554 * 3 2 1 7 7 C 1.40085 * 120.00026 * 180.27453 * 2 1 3 8 8 H 1.07999 * 119.99970 * 179.72754 * 7 2 1 9 9 C 1.40956 * 119.99889 * 359.72534 * 7 2 1 10 10 C 1.40898 * 119.67801 * 180.02562 * 9 7 2 11 11 C 1.36639 * 119.25846 * 179.97438 * 10 9 7 12 12 C 1.40310 * 118.60903 * 359.97438 * 11 10 9 13 13 C 1.47880 * 120.35012 * 180.02562 * 12 11 10 14 14 C 1.39911 * 120.14223 * 64.99738 * 13 12 11 15 15 F 1.35102 * 120.04551 * 359.95845 * 14 13 12 16 16 C 1.38147 * 119.90722 * 179.97438 * 14 13 12 17 17 C 1.38335 * 120.20193 * 359.97438 * 16 14 13 18 18 C 1.38814 * 120.28970 * 0.02562 * 17 16 14 19 19 O 1.35976 * 119.95691 * 180.02562 * 18 17 16 20 20 C 1.38511 * 120.08671 * 359.74962 * 18 17 16 21 21 Cl 1.73598 * 120.10092 * 180.25151 * 20 18 17 22 22 C 1.40136 * 119.29646 * 359.97438 * 12 11 10 23 23 N 1.31183 * 120.68734 * 359.74261 * 22 12 11 24 24 H 0.97000 * 119.99693 * 359.72762 * 1 2 3 25 25 H 1.07999 * 120.36335 * 359.97438 * 10 9 7 26 26 H 1.08004 * 120.69586 * 179.97438 * 11 10 9 27 27 H 1.07999 * 119.90000 * 179.97438 * 16 14 13 28 28 H 1.08004 * 119.85509 * 180.02562 * 17 16 14 29 29 H 0.96698 * 113.99891 * 89.99487 * 19 18 17 30 30 H 1.08008 * 119.65745 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.4829 2.0498 -1.4001 5 1 1.4416 2.6510 0.7058 6 1 3.5417 1.4385 0.6942 7 6 2.0077 -1.2132 -0.0058 8 1 3.0877 -1.2131 -0.0103 9 6 1.3029 -2.4339 -0.0058 10 6 2.0143 -3.6501 -0.0111 11 6 1.3224 -4.8284 -0.0105 12 6 -0.0800 -4.7841 -0.0041 13 6 -0.8671 -6.0360 -0.0027 14 6 -0.8032 -6.9048 1.0921 15 9 -0.0208 -6.6022 2.1511 16 6 -1.5410 -8.0728 1.0885 17 6 -2.3434 -8.3857 0.0060 18 6 -2.4130 -7.5297 -1.0846 19 8 -3.2043 -7.8437 -2.1448 20 6 -1.6819 -6.3532 -1.0916 21 17 -1.7738 -5.2792 -2.4524 22 6 -0.7267 -3.5409 0.0021 23 7 -0.0349 -2.4263 0.0069 24 1 -0.4850 0.8401 0.0040 25 1 3.0942 -3.6509 -0.0156 26 1 1.8441 -5.7741 -0.0150 27 1 -1.4912 -8.7436 1.9335 28 1 -2.9181 -9.3001 0.0093 29 1 -4.1085 -7.5083 -2.0738 30 1 -1.8060 -3.5000 0.0075 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245832431.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:19 Heat of formation + Delta-G solvation = -38.346690 kcal Electronic energy + Delta-G solvation = -20124.624077 eV Core-core repulsion = 16632.243376 eV Total energy + Delta-G solvation = -3492.380700 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.49113 -39.56939 -38.17505 -36.44100 -36.00451 -33.87287 -31.89040 -30.61633 -29.43164 -28.68899 -25.76107 -22.97744 -22.47111 -21.70708 -20.71159 -18.17504 -17.61153 -17.41017 -16.66456 -15.76855 -15.48866 -15.19728 -14.62679 -14.37961 -14.21022 -13.97479 -13.65398 -13.06775 -12.67837 -12.43532 -12.22350 -12.06659 -11.67420 -11.26048 -11.20215 -11.09089 -11.00358 -10.77867 -10.64113 -10.30337 -10.02051 -9.50224 -8.73827 -8.36518 -8.28779 -7.67144 -7.52855 -6.54280 -4.65740 1.08483 1.16131 2.45104 2.57497 3.01677 3.03853 3.04158 3.07646 3.50375 3.83704 4.11583 4.47860 4.59883 4.89071 5.06712 5.31141 5.64335 5.78096 5.93034 5.98265 6.07358 6.11604 6.25924 6.27374 6.67703 6.73535 6.83804 6.96916 7.28176 7.45679 7.55759 7.61912 7.91636 8.08174 8.50213 8.79090 9.98858 10.15619 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.025311 B = 0.004654 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.971539 B = 6014.581950 C = 6709.650296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.702 5.702 2 C 0.065 3.935 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.413 4.413 8 H 0.087 0.913 9 C 0.257 3.743 10 C -0.272 4.272 11 C -0.022 4.022 12 C -0.291 4.291 13 C 0.012 3.988 14 C 0.095 3.905 15 F -0.128 7.128 16 C -0.137 4.137 17 C -0.130 4.130 18 C 0.101 3.899 19 O -0.488 6.488 20 C -0.044 4.044 21 Cl -0.039 7.039 22 C 0.173 3.827 23 N -0.486 5.486 24 H 0.276 0.724 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.138 0.862 28 H 0.139 0.861 29 H 0.389 0.611 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.665 -10.373 -0.232 11.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.322 5.322 2 C -0.162 4.162 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.442 4.442 8 H 0.105 0.895 9 C 0.134 3.866 10 C -0.294 4.294 11 C -0.046 4.046 12 C -0.297 4.297 13 C 0.009 3.991 14 C 0.075 3.925 15 F -0.106 7.106 16 C -0.156 4.156 17 C -0.148 4.148 18 C 0.055 3.945 19 O -0.297 6.297 20 C -0.072 4.072 21 Cl -0.010 7.010 22 C 0.004 3.996 23 N -0.198 5.198 24 H 0.087 0.913 25 H 0.119 0.881 26 H 0.111 0.889 27 H 0.156 0.844 28 H 0.157 0.843 29 H 0.244 0.756 30 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.690 -9.520 -0.519 11.103 hybrid contribution 0.474 0.117 0.215 0.534 sum -5.216 -9.403 -0.304 10.757 Atomic orbital electron populations 1.70128 1.07336 1.28241 1.26464 1.26173 0.94984 1.01405 0.93649 0.86270 0.80503 0.80413 0.79407 1.19216 1.19921 1.18358 1.19737 0.94599 0.89560 1.40354 0.89494 1.18641 0.88497 0.91904 0.87599 1.21353 0.98822 0.93397 1.15875 1.20436 0.92305 0.96739 0.95090 1.18639 0.93034 0.91013 1.26991 1.18713 0.95185 0.94910 0.90268 1.17784 0.94411 0.95173 0.85139 1.91510 1.72159 1.93198 1.53740 1.20950 0.98231 0.96443 0.99994 1.21015 1.01393 1.00531 0.91904 1.18074 0.95940 0.92180 0.88261 1.84861 1.25926 1.78542 1.40397 1.21436 1.02233 0.92390 0.91138 1.98378 1.97066 1.63648 1.41928 1.22547 0.98254 0.87309 0.91504 1.68808 1.07078 1.25740 1.18140 0.91251 0.88085 0.88861 0.84376 0.84276 0.75558 0.86617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.17 11.44 55.55 0.64 -17.54 16 2 C 0.07 1.60 5.50 -17.33 -0.10 1.51 16 3 Si 0.91 17.97 29.56 -169.99 -5.02 12.94 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.41 -10.74 9.12 -37.86 -0.35 -11.08 16 8 H 0.09 2.10 7.85 -52.49 -0.41 1.69 16 9 C 0.26 6.90 6.55 -84.98 -0.56 6.34 16 10 C -0.27 -6.63 9.76 -39.15 -0.38 -7.01 16 11 C -0.02 -0.51 9.66 -39.38 -0.38 -0.89 16 12 C -0.29 -6.46 4.39 -104.46 -0.46 -6.91 16 13 C 0.01 0.22 5.35 -104.80 -0.56 -0.34 16 14 C 0.09 1.60 7.25 -38.99 -0.28 1.32 16 15 F -0.13 -2.35 16.69 2.25 0.04 -2.31 16 16 C -0.14 -1.79 10.01 -39.58 -0.40 -2.19 16 17 C -0.13 -1.56 9.98 -39.33 -0.39 -1.95 16 18 C 0.10 1.41 6.69 -39.27 -0.26 1.15 16 19 O -0.49 -5.87 12.95 -19.67 -0.25 -6.12 16 20 C -0.04 -0.75 6.34 -38.95 -0.25 -1.00 16 21 Cl -0.04 -0.70 26.86 -51.86 -1.39 -2.09 16 22 C 0.17 4.16 10.01 -17.12 -0.17 3.99 16 23 N -0.49 -13.19 7.83 -10.83 -0.08 -13.27 16 24 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16 25 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 26 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 27 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 28 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 29 H 0.39 2.89 9.06 45.56 0.41 3.30 16 30 H 0.12 2.60 8.06 -52.48 -0.42 2.18 16 LS Contribution 292.74 15.07 4.41 4.41 Total: -1.00 -29.52 292.74 -7.45 -36.97 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -1.25 Total: 4.08 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -4.53 Total: -17.06 kcal Atomic # 7 Polarization: -31.36 SS G_CDS: 0.55 Total: -30.81 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.25 Total: -6.12 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.02 Total: 12.94 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.39 Total: -2.09 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.52 -7.45 -36.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245832431.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.380 kcal (2) G-P(sol) polarization free energy of solvation -29.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds