Wall clock time and date at job start Tue Mar 31 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86800 * 119.99649 * 2 1 4 4 H 1.48501 * 109.47090 * 270.27255 * 3 2 1 5 5 H 1.48495 * 109.47520 * 30.27597 * 3 2 1 6 6 H 1.48507 * 109.46786 * 150.27554 * 3 2 1 7 7 C 1.40085 * 120.00026 * 180.27453 * 2 1 3 8 8 H 1.07999 * 119.99970 * 179.72754 * 7 2 1 9 9 C 1.40956 * 119.99889 * 359.72534 * 7 2 1 10 10 C 1.40898 * 119.67801 * 180.02562 * 9 7 2 11 11 C 1.36639 * 119.25846 * 179.97438 * 10 9 7 12 12 C 1.40310 * 118.60903 * 359.97438 * 11 10 9 13 13 C 1.47880 * 120.35012 * 180.02562 * 12 11 10 14 14 C 1.39911 * 120.14223 * 64.99738 * 13 12 11 15 15 F 1.35102 * 120.04551 * 359.95845 * 14 13 12 16 16 C 1.38147 * 119.90722 * 179.97438 * 14 13 12 17 17 C 1.38335 * 120.20193 * 359.97438 * 16 14 13 18 18 C 1.38814 * 120.28970 * 0.02562 * 17 16 14 19 19 O 1.35976 * 119.95691 * 180.02562 * 18 17 16 20 20 C 1.38511 * 120.08671 * 359.74962 * 18 17 16 21 21 Cl 1.73598 * 120.10092 * 180.25151 * 20 18 17 22 22 C 1.40136 * 119.29646 * 359.97438 * 12 11 10 23 23 N 1.31183 * 120.68734 * 359.74261 * 22 12 11 24 24 H 0.97000 * 119.99693 * 359.72762 * 1 2 3 25 25 H 1.07999 * 120.36335 * 359.97438 * 10 9 7 26 26 H 1.08004 * 120.69586 * 179.97438 * 11 10 9 27 27 H 1.07999 * 119.90000 * 179.97438 * 16 14 13 28 28 H 1.08004 * 119.85509 * 180.02562 * 17 16 14 29 29 H 0.96698 * 113.99891 * 89.99487 * 19 18 17 30 30 H 1.08008 * 119.65745 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.4829 2.0498 -1.4001 5 1 1.4416 2.6510 0.7058 6 1 3.5417 1.4385 0.6942 7 6 2.0077 -1.2132 -0.0058 8 1 3.0877 -1.2131 -0.0103 9 6 1.3029 -2.4339 -0.0058 10 6 2.0143 -3.6501 -0.0111 11 6 1.3224 -4.8284 -0.0105 12 6 -0.0800 -4.7841 -0.0041 13 6 -0.8671 -6.0360 -0.0027 14 6 -0.8032 -6.9048 1.0921 15 9 -0.0208 -6.6022 2.1511 16 6 -1.5410 -8.0728 1.0885 17 6 -2.3434 -8.3857 0.0060 18 6 -2.4130 -7.5297 -1.0846 19 8 -3.2043 -7.8437 -2.1448 20 6 -1.6819 -6.3532 -1.0916 21 17 -1.7738 -5.2792 -2.4524 22 6 -0.7267 -3.5409 0.0021 23 7 -0.0349 -2.4263 0.0069 24 1 -0.4850 0.8401 0.0040 25 1 3.0942 -3.6509 -0.0156 26 1 1.8441 -5.7741 -0.0150 27 1 -1.4912 -8.7436 1.9335 28 1 -2.9181 -9.3001 0.0093 29 1 -4.1085 -7.5083 -2.0738 30 1 -1.8060 -3.5000 0.0075 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245832431.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:18 Heat of formation + Delta-G solvation = -56.604461 kcal Electronic energy + Delta-G solvation = -20125.415793 eV Core-core repulsion = 16632.243376 eV Total energy + Delta-G solvation = -3493.172417 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.83542 -40.81239 -39.89635 -37.61215 -37.29416 -35.64819 -33.43212 -32.48086 -30.86024 -30.05862 -27.48094 -24.41764 -23.94412 -23.33915 -22.28957 -19.49390 -19.28245 -18.65580 -17.92569 -17.51045 -16.79088 -16.58803 -16.08812 -15.90762 -15.84618 -15.45018 -14.83039 -14.41511 -14.26549 -14.01912 -13.89774 -13.55591 -13.08805 -12.86608 -12.80371 -12.73137 -12.39281 -12.21762 -12.04170 -11.83703 -11.47871 -11.25884 -10.29782 -10.06246 -9.56299 -9.53795 -9.25719 -8.36727 -6.57728 -0.07481 -0.06684 0.80454 1.14823 1.16909 1.39454 1.50524 1.54647 2.19408 2.31936 2.76605 3.08063 3.29667 3.74359 3.81556 3.97660 4.11205 4.16968 4.28582 4.51053 4.76110 4.83436 4.89154 4.99049 5.05617 5.09101 5.14436 5.43160 5.55715 5.67148 5.80587 6.05756 6.19435 6.63919 6.74106 6.87975 8.10558 8.36123 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.025311 B = 0.004654 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.971539 B = 6014.581950 C = 6709.650296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.022 3.978 3 Si 0.991 3.009 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.253 1.253 7 C -0.452 4.452 8 H 0.094 0.906 9 C 0.225 3.775 10 C -0.287 4.287 11 C -0.030 4.030 12 C -0.269 4.269 13 C -0.025 4.025 14 C 0.076 3.924 15 F -0.143 7.143 16 C -0.117 4.117 17 C -0.104 4.104 18 C 0.113 3.887 19 O -0.490 6.490 20 C -0.058 4.058 21 Cl -0.059 7.059 22 C 0.153 3.847 23 N -0.518 5.518 24 H 0.282 0.718 25 H 0.112 0.888 26 H 0.115 0.885 27 H 0.176 0.824 28 H 0.186 0.814 29 H 0.412 0.588 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.562 -12.776 0.009 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.201 4.201 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.177 1.177 7 C -0.482 4.482 8 H 0.112 0.888 9 C 0.101 3.899 10 C -0.310 4.310 11 C -0.054 4.054 12 C -0.274 4.274 13 C -0.027 4.027 14 C 0.056 3.944 15 F -0.122 7.122 16 C -0.136 4.136 17 C -0.122 4.122 18 C 0.067 3.933 19 O -0.303 6.303 20 C -0.085 4.085 21 Cl -0.029 7.029 22 C -0.014 4.014 23 N -0.231 5.231 24 H 0.093 0.907 25 H 0.130 0.870 26 H 0.133 0.867 27 H 0.194 0.806 28 H 0.203 0.797 29 H 0.271 0.729 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.626 -11.958 -0.281 13.674 hybrid contribution 0.572 0.522 0.113 0.783 sum -6.054 -11.436 -0.168 12.941 Atomic orbital electron populations 1.70223 1.09071 1.29531 1.27863 1.27098 0.95753 1.04794 0.92450 0.85083 0.79042 0.75297 0.79564 1.18634 1.19073 1.17673 1.20076 0.95144 0.90460 1.42535 0.88830 1.19066 0.88874 0.93268 0.88654 1.21539 0.99558 0.93450 1.16414 1.20751 0.92923 0.97089 0.94592 1.18868 0.93220 0.92121 1.23191 1.18595 0.97096 0.94592 0.92437 1.18043 0.95517 0.96392 0.84408 1.91473 1.72854 1.93525 1.54337 1.21348 0.96015 0.94888 1.01302 1.21512 0.99850 1.00917 0.89950 1.18187 0.95222 0.90922 0.88996 1.84814 1.27360 1.78314 1.39813 1.21585 1.03034 0.93517 0.90411 1.98371 1.97199 1.64576 1.42800 1.22741 0.98564 0.87828 0.92226 1.68727 1.07647 1.27453 1.19265 0.90696 0.86953 0.86693 0.80643 0.79729 0.72862 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.30 11.44 21.85 0.25 -40.05 16 2 C 0.02 1.12 5.50 85.31 0.47 1.59 16 3 Si 0.99 37.68 29.56 68.60 2.03 39.71 16 4 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 5 H -0.27 -9.65 7.11 99.48 0.71 -8.95 16 6 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 7 C -0.45 -24.58 9.12 23.38 0.21 -24.36 16 8 H 0.09 4.71 7.85 -2.91 -0.02 4.69 16 9 C 0.22 12.69 6.55 40.16 0.26 12.95 16 10 C -0.29 -14.53 9.76 22.55 0.22 -14.31 16 11 C -0.03 -1.39 9.66 22.40 0.22 -1.17 16 12 C -0.27 -12.15 4.39 -19.76 -0.09 -12.23 16 13 C -0.02 -0.91 5.35 -19.98 -0.11 -1.01 16 14 C 0.08 2.42 7.25 22.65 0.16 2.58 16 15 F -0.14 -5.14 16.69 44.97 0.75 -4.39 16 16 C -0.12 -2.52 10.01 22.27 0.22 -2.29 16 17 C -0.10 -1.93 9.98 22.43 0.22 -1.71 16 18 C 0.11 2.74 6.69 22.47 0.15 2.89 16 19 O -0.49 -9.87 12.95 -93.28 -1.21 -11.08 16 20 C -0.06 -1.88 6.34 22.68 0.14 -1.74 16 21 Cl -0.06 -2.07 26.86 -2.72 -0.07 -2.14 16 22 C 0.15 7.69 10.01 85.25 0.85 8.55 16 23 N -0.52 -29.58 7.83 -188.19 -1.47 -31.05 16 24 H 0.28 13.69 8.29 -92.71 -0.77 12.92 16 25 H 0.11 5.22 8.06 -2.91 -0.02 5.19 16 26 H 0.12 4.71 8.06 -2.91 -0.02 4.68 16 27 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 28 H 0.19 1.89 8.06 -2.91 -0.02 1.87 16 29 H 0.41 4.47 9.06 -74.06 -0.67 3.80 16 30 H 0.12 5.74 8.06 -2.91 -0.02 5.72 16 Total: -1.00 -68.05 292.74 3.76 -64.29 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.54 Total: 14.98 kcal Atomic # 6 Polarization: -33.21 SS G_CDS: 2.95 Total: -30.26 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: -1.22 Total: -71.10 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -1.21 Total: -11.08 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.75 Total: -4.39 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.71 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -0.07 Total: -2.14 kcal Total: -68.05 3.76 -64.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245832431.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.683 kcal (2) G-P(sol) polarization free energy of solvation -68.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds