Wall clock time and date at job start Tue Mar 31 2020 07:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38355 * 119.92904 * 2 1 4 4 C 1.38258 * 120.26443 * 180.02562 * 3 2 1 5 5 C 1.38186 * 120.10112 * 359.71711 * 4 3 2 6 6 Cl 1.73598 * 120.07692 * 180.29613 * 5 4 3 7 7 C 1.39427 * 119.84651 * 0.55631 * 5 4 3 8 8 C 1.48394 * 120.12583 * 179.71933 * 7 5 4 9 9 N 1.30770 * 126.41696 * 179.70471 * 8 7 5 10 10 O 1.21291 * 110.09817 * 179.74903 * 9 8 7 11 11 C 1.33672 * 110.02534 * 0.43072 * 10 9 8 12 12 C 1.50706 * 126.43270 * 179.83993 * 11 10 9 13 13 H 1.09001 * 109.46953 * 194.68116 * 12 11 10 14 14 N 1.46899 * 109.47101 * 314.68283 * 12 11 10 15 15 C 1.50698 * 109.47294 * 74.68673 * 12 11 10 16 16 H 1.08005 * 119.99819 * 359.97438 * 15 12 11 17 17 C 1.37875 * 120.00046 * 180.02562 * 15 12 11 18 18 N 1.31512 * 119.99933 * 179.97438 * 17 15 12 19 19 Si 1.86799 * 119.99912 * 359.97438 * 17 15 12 20 20 H 1.48498 * 109.47123 * 90.00333 * 19 17 15 21 21 H 1.48506 * 109.46940 * 210.00455 * 19 17 15 22 22 H 1.48497 * 109.47329 * 330.00167 * 19 17 15 23 23 N 1.30972 * 107.12853 * 359.57157 * 11 10 9 24 24 C 1.37988 * 119.92338 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.47332 * 269.98106 * 1 2 3 26 26 H 1.09010 * 109.46948 * 29.98059 * 1 2 3 27 27 H 1.09001 * 109.47370 * 149.97786 * 1 2 3 28 28 H 1.08006 * 119.86832 * 359.97438 * 3 2 1 29 29 H 1.07995 * 119.94961 * 180.02562 * 4 3 2 30 30 H 1.00897 * 110.99782 * 60.00139 * 14 12 11 31 31 H 1.00900 * 110.99667 * 183.96025 * 14 12 11 32 32 H 0.97006 * 119.99727 * 179.97438 * 18 17 15 33 33 H 1.08002 * 120.05318 * 359.95607 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1990 0.0000 4 6 3.5798 1.2071 -0.0005 5 6 4.2799 0.0157 0.0048 6 17 6.0158 0.0266 0.0119 7 6 3.5887 -1.1952 -0.0010 8 6 4.3343 -2.4783 -0.0015 9 7 3.8144 -3.6782 -0.0012 10 8 4.6939 -4.5134 -0.0069 11 6 5.8907 -3.9180 -0.0020 12 6 7.2321 -4.6049 -0.0030 13 1 8.0081 -3.8869 0.2622 14 7 7.2223 -5.6996 0.9766 15 6 7.5105 -5.1614 -1.3755 16 1 6.7882 -5.0311 -2.1678 17 6 8.6869 -5.8378 -1.6195 18 7 8.9297 -6.3238 -2.8172 19 14 9.9359 -6.0637 -0.2490 20 1 9.6505 -7.3270 0.4775 21 1 11.3017 -6.1240 -0.8289 22 1 9.8486 -4.9199 0.6939 23 7 5.6785 -2.6256 -0.0021 24 6 2.1953 -1.1959 -0.0005 25 1 -0.3634 -0.0003 1.0277 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6539 2.1325 -0.0004 29 1 4.1135 2.1460 -0.0001 30 1 6.5108 -6.3790 0.7525 31 1 8.1304 -6.1348 1.0414 32 1 9.7576 -6.7994 -2.9889 33 1 1.6549 -2.1310 -0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248224405.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:35 Heat of formation + Delta-G solvation = 90.135592 kcal Electronic energy + Delta-G solvation = -20376.979687 eV Core-core repulsion = 17045.923452 eV Total energy + Delta-G solvation = -3331.056234 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.84463 -39.56844 -36.28864 -35.71309 -35.17719 -32.75600 -32.35708 -31.73189 -30.21534 -27.08319 -26.64827 -24.52025 -24.01750 -22.58190 -21.34577 -20.06805 -17.68997 -17.27051 -17.00359 -16.55263 -15.94309 -15.45226 -15.35816 -14.46340 -14.19031 -13.94270 -13.69039 -13.47687 -13.05535 -12.87289 -12.66255 -12.37898 -11.90294 -11.76171 -11.51548 -11.39151 -11.32729 -11.07771 -11.00059 -10.95940 -10.50404 -9.91792 -9.82654 -9.73895 -8.96660 -8.88256 -8.44832 -7.89623 -6.42125 -4.50950 0.67755 1.04632 1.96891 2.31122 2.85868 3.02361 3.15981 3.18143 3.57653 3.61541 3.81593 4.06100 4.33519 4.57767 4.72870 4.90099 4.96108 4.99427 5.29238 5.36206 5.39924 5.49580 5.70566 5.74782 5.77391 5.95074 6.12272 6.23901 6.34782 6.47286 6.59657 6.74159 7.05905 7.69870 7.98436 8.18054 8.60061 8.76670 9.10868 10.69655 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.026773 B = 0.004266 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.593549 B = 6561.989333 C = 7111.967287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.099 4.099 4 C -0.113 4.113 5 C -0.011 4.011 6 Cl -0.026 7.026 7 C 0.006 3.994 8 C 0.191 3.809 9 N -0.390 5.390 10 O 0.081 5.919 11 C 0.255 3.745 12 C 0.266 3.734 13 H 0.089 0.911 14 N -0.849 5.849 15 C -0.560 4.560 16 H 0.081 0.919 17 C 0.084 3.916 18 N -0.875 5.875 19 Si 0.869 3.131 20 H -0.269 1.269 21 H -0.284 1.284 22 H -0.255 1.255 23 N -0.475 5.475 24 C -0.078 4.078 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.133 0.867 29 H 0.138 0.862 30 H 0.342 0.658 31 H 0.331 0.669 32 H 0.272 0.728 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.004 12.704 6.640 18.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 C -0.118 4.118 4 C -0.132 4.132 5 C -0.040 4.040 6 Cl 0.004 6.996 7 C 0.003 3.997 8 C -0.079 4.079 9 N -0.099 5.099 10 O 0.022 5.978 11 C 0.035 3.965 12 C 0.154 3.846 13 H 0.106 0.894 14 N -0.385 5.385 15 C -0.601 4.601 16 H 0.099 0.901 17 C -0.122 4.122 18 N -0.510 5.510 19 Si 0.696 3.304 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.180 1.180 23 N -0.208 5.208 24 C -0.098 4.098 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.151 0.849 29 H 0.156 0.844 30 H 0.154 0.846 31 H 0.149 0.851 32 H 0.082 0.918 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.595 13.422 7.057 19.713 hybrid contribution 1.316 -0.967 -0.392 1.679 sum -11.279 12.455 6.665 18.077 Atomic orbital electron populations 1.20791 0.90343 1.03156 1.02635 1.19872 0.96628 0.92471 0.99994 1.21089 0.93309 0.97940 0.99443 1.21000 0.94182 0.96645 1.01335 1.21039 0.87117 0.93459 1.02398 1.98437 1.06467 1.98560 1.96133 1.17235 0.91937 0.87082 1.03410 1.23608 0.88098 0.92846 1.03320 1.74760 1.13981 0.99310 1.21851 1.85215 1.13511 1.33684 1.65426 1.29222 0.90733 0.86799 0.89734 1.18142 0.82561 0.91047 0.92835 0.89360 1.59563 1.10344 1.15881 1.52740 1.21333 1.06411 1.37331 0.94996 0.90111 1.24897 0.97158 0.94292 0.95878 1.69856 1.25555 1.35025 1.20603 0.87058 0.81375 0.79771 0.82156 1.19484 1.21039 1.17966 1.72366 1.11841 1.14646 1.21977 1.21053 0.91644 0.98868 0.98268 0.90857 0.91215 0.91174 0.84885 0.84375 0.84556 0.85083 0.91793 0.84425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.00 0.36 -0.47 16 2 C -0.09 -0.95 5.87 -104.67 -0.61 -1.57 16 3 C -0.10 -0.97 9.69 -39.53 -0.38 -1.35 16 4 C -0.11 -1.30 9.82 -39.59 -0.39 -1.68 16 5 C -0.01 -0.17 6.34 -39.16 -0.25 -0.42 16 6 Cl -0.03 -0.42 26.15 -51.86 -1.36 -1.78 16 7 C 0.01 0.10 5.88 -104.86 -0.62 -0.52 16 8 C 0.19 3.83 7.72 -156.11 -1.21 2.63 16 9 N -0.39 -7.99 11.86 30.97 0.37 -7.63 16 10 O 0.08 1.75 11.28 18.03 0.20 1.95 16 11 C 0.25 5.70 7.24 -12.99 -0.09 5.61 16 12 C 0.27 6.12 2.79 -70.01 -0.20 5.93 16 13 H 0.09 2.07 7.20 -51.93 -0.37 1.70 16 14 N -0.85 -17.66 9.14 -6.65 -0.06 -17.72 16 15 C -0.56 -14.89 9.29 -34.44 -0.32 -15.21 16 16 H 0.08 2.40 7.98 -52.48 -0.42 1.98 16 17 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 18 N -0.88 -24.97 13.96 55.43 0.77 -24.20 16 19 Si 0.87 19.31 24.61 -169.99 -4.18 15.13 16 20 H -0.27 -5.63 7.01 56.52 0.40 -5.24 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.26 -5.48 6.54 56.52 0.37 -5.11 16 23 N -0.48 -10.34 8.90 -9.88 -0.09 -10.43 16 24 C -0.08 -1.07 9.34 -39.26 -0.37 -1.43 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.41 8.08 -51.92 -0.42 -0.01 16 27 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 28 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 29 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 30 H 0.34 6.74 8.97 -39.29 -0.35 6.39 16 31 H 0.33 6.82 4.29 -39.29 -0.17 6.65 16 32 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.14 1.82 7.87 -52.49 -0.41 1.41 16 LS Contribution 301.06 15.07 4.54 4.54 Total: -1.00 -29.42 301.06 -6.98 -36.41 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -3.01 Total: 10.07 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -4.17 Total: -6.34 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.99 Total: -59.97 kcal Atomic # 8 Polarization: 1.75 SS G_CDS: 0.20 Total: 1.95 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.18 Total: 15.13 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.36 Total: -1.78 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.42 -6.98 -36.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248224405.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.542 kcal (2) G-P(sol) polarization free energy of solvation -29.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds