Wall clock time and date at job start Tue Mar 31 2020 07:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38355 * 119.92904 * 2 1 4 4 C 1.38258 * 120.26443 * 180.02562 * 3 2 1 5 5 C 1.38186 * 120.10112 * 359.71711 * 4 3 2 6 6 Cl 1.73598 * 120.07692 * 180.29613 * 5 4 3 7 7 C 1.39427 * 119.84651 * 0.55631 * 5 4 3 8 8 C 1.48394 * 120.12583 * 179.71933 * 7 5 4 9 9 N 1.30770 * 126.41696 * 179.70471 * 8 7 5 10 10 O 1.21291 * 110.09817 * 179.74903 * 9 8 7 11 11 C 1.33672 * 110.02534 * 0.43072 * 10 9 8 12 12 C 1.50706 * 126.43270 * 179.83993 * 11 10 9 13 13 H 1.09001 * 109.46953 * 194.68116 * 12 11 10 14 14 N 1.46899 * 109.47101 * 314.68283 * 12 11 10 15 15 C 1.50698 * 109.47294 * 74.68673 * 12 11 10 16 16 H 1.08005 * 119.99819 * 359.97438 * 15 12 11 17 17 C 1.37875 * 120.00046 * 180.02562 * 15 12 11 18 18 N 1.31512 * 119.99933 * 179.97438 * 17 15 12 19 19 Si 1.86799 * 119.99912 * 359.97438 * 17 15 12 20 20 H 1.48498 * 109.47123 * 90.00333 * 19 17 15 21 21 H 1.48506 * 109.46940 * 210.00455 * 19 17 15 22 22 H 1.48497 * 109.47329 * 330.00167 * 19 17 15 23 23 N 1.30972 * 107.12853 * 359.57157 * 11 10 9 24 24 C 1.37988 * 119.92338 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.47332 * 269.98106 * 1 2 3 26 26 H 1.09010 * 109.46948 * 29.98059 * 1 2 3 27 27 H 1.09001 * 109.47370 * 149.97786 * 1 2 3 28 28 H 1.08006 * 119.86832 * 359.97438 * 3 2 1 29 29 H 1.07995 * 119.94961 * 180.02562 * 4 3 2 30 30 H 1.00897 * 110.99782 * 60.00139 * 14 12 11 31 31 H 1.00900 * 110.99667 * 183.96025 * 14 12 11 32 32 H 0.97006 * 119.99727 * 179.97438 * 18 17 15 33 33 H 1.08002 * 120.05318 * 359.95607 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1990 0.0000 4 6 3.5798 1.2071 -0.0005 5 6 4.2799 0.0157 0.0048 6 17 6.0158 0.0266 0.0119 7 6 3.5887 -1.1952 -0.0010 8 6 4.3343 -2.4783 -0.0015 9 7 3.8144 -3.6782 -0.0012 10 8 4.6939 -4.5134 -0.0069 11 6 5.8907 -3.9180 -0.0020 12 6 7.2321 -4.6049 -0.0030 13 1 8.0081 -3.8869 0.2622 14 7 7.2223 -5.6996 0.9766 15 6 7.5105 -5.1614 -1.3755 16 1 6.7882 -5.0311 -2.1678 17 6 8.6869 -5.8378 -1.6195 18 7 8.9297 -6.3238 -2.8172 19 14 9.9359 -6.0637 -0.2490 20 1 9.6505 -7.3270 0.4775 21 1 11.3017 -6.1240 -0.8289 22 1 9.8486 -4.9199 0.6939 23 7 5.6785 -2.6256 -0.0021 24 6 2.1953 -1.1959 -0.0005 25 1 -0.3634 -0.0003 1.0277 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6539 2.1325 -0.0004 29 1 4.1135 2.1460 -0.0001 30 1 6.5108 -6.3790 0.7525 31 1 8.1304 -6.1348 1.0414 32 1 9.7576 -6.7994 -2.9889 33 1 1.6549 -2.1310 -0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248224405.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:34 Heat of formation + Delta-G solvation = 69.268337 kcal Electronic energy + Delta-G solvation = -20377.884559 eV Core-core repulsion = 17045.923452 eV Total energy + Delta-G solvation = -3331.961106 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.47623 -40.55720 -37.55662 -37.42282 -36.75313 -34.35747 -33.61583 -33.18694 -31.55532 -28.63976 -27.80854 -25.86715 -25.77306 -23.98803 -22.47614 -21.52510 -19.53888 -18.80808 -18.69005 -17.79383 -17.58847 -16.63525 -16.55239 -16.29982 -15.39435 -15.08875 -14.87614 -14.65907 -14.57717 -14.21770 -13.90595 -13.60284 -13.49848 -13.14173 -12.89610 -12.84310 -12.68952 -12.45091 -12.31557 -12.23262 -12.11894 -11.78709 -11.31201 -11.27094 -10.98520 -9.97520 -9.71890 -9.51750 -8.49205 -6.65221 -0.49416 0.08880 0.36832 1.17912 1.26617 1.35513 1.40826 1.44375 1.87512 2.16968 2.40721 2.54864 2.77773 2.95283 3.62747 3.80043 3.88018 3.98123 4.14095 4.26431 4.29554 4.57113 4.66903 4.72977 4.84237 4.86362 4.96220 5.04933 5.08813 5.14044 5.23086 5.43476 5.72612 5.81083 6.08038 6.36066 6.48104 7.01102 7.10194 8.66637 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.026773 B = 0.004266 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.593549 B = 6561.989333 C = 7111.967287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.081 4.081 3 C -0.078 4.078 4 C -0.107 4.107 5 C -0.029 4.029 6 Cl -0.051 7.051 7 C -0.035 4.035 8 C 0.196 3.804 9 N -0.399 5.399 10 O 0.068 5.932 11 C 0.240 3.760 12 C 0.276 3.724 13 H 0.088 0.912 14 N -0.836 5.836 15 C -0.569 4.569 16 H 0.032 0.968 17 C 0.033 3.967 18 N -0.924 5.924 19 Si 0.935 3.065 20 H -0.241 1.241 21 H -0.284 1.284 22 H -0.241 1.241 23 N -0.484 5.484 24 C -0.086 4.086 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.180 0.820 29 H 0.165 0.835 30 H 0.349 0.651 31 H 0.336 0.664 32 H 0.277 0.723 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.361 14.813 8.346 21.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.081 4.081 3 C -0.097 4.097 4 C -0.126 4.126 5 C -0.058 4.058 6 Cl -0.022 7.022 7 C -0.038 4.038 8 C -0.074 4.074 9 N -0.110 5.110 10 O 0.013 5.987 11 C 0.020 3.980 12 C 0.164 3.836 13 H 0.106 0.894 14 N -0.372 5.372 15 C -0.609 4.609 16 H 0.050 0.950 17 C -0.169 4.169 18 N -0.560 5.560 19 Si 0.757 3.243 20 H -0.166 1.166 21 H -0.211 1.211 22 H -0.164 1.164 23 N -0.218 5.218 24 C -0.107 4.107 25 H 0.106 0.894 26 H 0.113 0.887 27 H 0.087 0.913 28 H 0.197 0.803 29 H 0.183 0.817 30 H 0.162 0.838 31 H 0.154 0.846 32 H 0.086 0.914 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.971 15.502 8.773 22.638 hybrid contribution 1.518 -1.467 -1.005 2.338 sum -12.453 14.034 7.769 20.307 Atomic orbital electron populations 1.20895 0.87595 1.04432 1.03909 1.20306 0.98490 0.91548 0.97800 1.21641 0.92570 0.99384 0.96073 1.21383 0.95129 0.96189 0.99871 1.21267 0.85995 0.94382 1.04124 1.98421 1.08749 1.98603 1.96408 1.17467 0.93117 0.85979 1.07223 1.24294 0.87667 0.94067 1.01334 1.74721 1.13589 0.99545 1.23175 1.85184 1.13389 1.34167 1.65990 1.29121 0.90901 0.87310 0.90705 1.17842 0.83075 0.91471 0.91179 0.89447 1.59493 1.10820 1.15667 1.51222 1.21399 1.05807 1.38089 0.95643 0.95005 1.25792 0.99131 0.93423 0.98532 1.69998 1.26611 1.36206 1.23210 0.86006 0.77899 0.81322 0.79054 1.16574 1.21083 1.16422 1.72370 1.13076 1.14252 1.22066 1.21177 0.90506 1.00289 0.98681 0.89412 0.88683 0.91265 0.80277 0.81728 0.83817 0.84587 0.91403 0.84875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 71.23 0.71 -0.48 16 2 C -0.08 -1.46 5.87 -19.90 -0.12 -1.57 16 3 C -0.08 -1.17 9.69 22.30 0.22 -0.95 16 4 C -0.11 -2.14 9.82 22.26 0.22 -1.92 16 5 C -0.03 -0.85 6.34 22.54 0.14 -0.71 16 6 Cl -0.05 -1.71 26.15 -2.72 -0.07 -1.78 16 7 C -0.04 -1.17 5.88 -20.02 -0.12 -1.29 16 8 C 0.20 8.11 7.72 137.28 1.06 9.17 16 9 N -0.40 -16.93 11.86 -59.12 -0.70 -17.63 16 10 O 0.07 3.06 11.28 74.59 0.84 3.90 16 11 C 0.24 11.12 7.24 88.36 0.64 11.76 16 12 C 0.28 12.97 2.79 43.42 0.12 13.09 16 13 H 0.09 4.12 7.20 -2.39 -0.02 4.10 16 14 N -0.84 -34.16 9.14 -174.95 -1.60 -35.76 16 15 C -0.57 -31.46 9.29 25.60 0.24 -31.22 16 16 H 0.03 2.01 7.98 -2.91 -0.02 1.99 16 17 C 0.03 1.81 5.47 84.65 0.46 2.27 16 18 N -0.92 -54.34 13.96 21.45 0.30 -54.04 16 19 Si 0.93 39.36 24.61 68.60 1.69 41.04 16 20 H -0.24 -9.11 7.01 99.48 0.70 -8.42 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.24 -9.54 6.54 99.48 0.65 -8.89 16 23 N -0.48 -21.76 8.90 -302.49 -2.69 -24.45 16 24 C -0.09 -2.27 9.34 22.48 0.21 -2.06 16 25 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.09 0.59 8.08 -2.38 -0.02 0.57 16 27 H 0.07 0.79 8.08 -2.39 -0.02 0.77 16 28 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 29 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 30 H 0.35 13.66 8.97 -89.70 -0.80 12.86 16 31 H 0.34 13.15 4.29 -89.69 -0.39 12.76 16 32 H 0.28 15.01 8.31 -92.70 -0.77 14.24 16 33 H 0.13 3.51 7.87 -2.91 -0.02 3.49 16 Total: -1.00 -67.78 301.06 1.48 -66.30 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: -0.07 Total: 26.34 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 3.79 Total: -3.92 kcal Atomic # 7 Polarization: -127.19 SS G_CDS: -4.69 Total: -131.89 kcal Atomic # 8 Polarization: 3.06 SS G_CDS: 0.84 Total: 3.90 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 1.69 Total: 41.04 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.07 Total: -1.78 kcal Total: -67.78 1.48 -66.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248224405.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.570 kcal (2) G-P(sol) polarization free energy of solvation -67.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds