Wall clock time and date at job start Tue Mar 31 2020 07:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38013 * 120.05222 * 2 1 4 4 C 1.38427 * 120.10188 * 180.02562 * 3 2 1 5 5 Cl 1.73602 * 119.88638 * 179.97438 * 4 3 2 6 6 C 1.38462 * 120.22024 * 359.97141 * 4 3 2 7 7 C 1.37976 * 120.10679 * 0.02562 * 6 4 3 8 8 C 1.39317 * 120.05540 * 179.71903 * 2 1 3 9 9 C 1.48413 * 120.10619 * 0.02562 * 8 2 1 10 10 N 1.30767 * 126.41144 * 359.69065 * 9 8 2 11 11 O 1.21290 * 110.09583 * 179.80662 * 10 9 8 12 12 C 1.33672 * 110.02345 * 0.45686 * 11 10 9 13 13 C 1.50705 * 126.43402 * 179.71610 * 12 11 10 14 14 H 1.09001 * 109.47164 * 195.00307 * 13 12 11 15 15 N 1.46905 * 109.47138 * 314.99951 * 13 12 11 16 16 C 1.50698 * 109.47137 * 75.00157 * 13 12 11 17 17 H 1.07994 * 120.00245 * 0.02562 * 16 13 12 18 18 C 1.37880 * 119.99824 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99762 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 120.00101 * 180.02562 * 18 16 13 21 21 H 1.48508 * 109.47100 * 59.99584 * 20 18 16 22 22 H 1.48495 * 109.47585 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47224 * 299.99894 * 20 18 16 24 24 N 1.30968 * 107.12828 * 359.72023 * 12 11 10 25 25 H 1.09002 * 109.47152 * 90.00109 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00210 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00191 * 1 2 3 28 28 H 1.07995 * 119.94825 * 359.97353 * 3 2 1 29 29 H 1.07998 * 119.94975 * 179.97438 * 6 4 3 30 30 H 1.07998 * 120.05236 * 179.97438 * 7 6 4 31 31 H 1.00899 * 110.99802 * 296.05108 * 15 13 12 32 32 H 1.00906 * 110.99753 * 60.00147 * 15 13 12 33 33 H 0.97007 * 119.99667 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1946 0.0000 4 6 3.5825 1.1958 -0.0005 5 17 4.4462 2.7017 -0.0012 6 6 4.2804 0.0000 -0.0005 7 6 3.5984 -1.1995 -0.0004 8 6 2.2048 -1.2058 0.0059 9 6 1.4663 -2.4932 0.0117 10 7 0.1673 -2.6429 0.0175 11 8 -0.1164 -3.8221 0.0173 12 6 0.9977 -4.5608 0.0210 13 6 1.0736 -6.0660 0.0281 14 1 2.0832 -6.3776 0.2959 15 7 0.1198 -6.5998 1.0096 16 6 0.7321 -6.5925 -1.3420 17 1 0.4853 -5.9060 -2.1383 18 6 0.7348 -7.9508 -1.5789 19 7 1.0359 -8.7868 -0.6093 20 14 0.3123 -8.6036 -3.2773 21 1 1.2773 -8.0644 -4.2691 22 1 0.3869 -10.0866 -3.2704 23 1 -1.0628 -8.1784 -3.6431 24 7 2.0108 -3.7309 0.0176 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6582 2.1299 -0.0004 29 1 5.3604 0.0060 -0.0013 30 1 4.1437 -2.1317 -0.0008 31 1 0.3655 -6.3132 1.9453 32 1 -0.8242 -6.3245 0.7832 33 1 1.0382 -9.7424 -0.7761 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248224747.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:37 Heat of formation + Delta-G solvation = 86.503300 kcal Electronic energy + Delta-G solvation = -20209.812238 eV Core-core repulsion = 16878.598496 eV Total energy + Delta-G solvation = -3331.213742 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.90019 -39.66470 -36.82165 -35.47976 -34.93145 -33.20436 -32.08183 -31.23282 -30.04752 -27.34521 -26.51054 -24.40648 -23.71077 -22.16058 -21.92868 -20.15011 -17.66722 -17.33905 -16.71526 -16.44130 -15.80962 -15.39046 -14.81948 -14.58834 -14.21282 -14.09457 -13.58316 -13.47948 -13.03597 -12.91132 -12.67748 -12.02850 -11.93508 -11.81051 -11.64344 -11.27698 -11.14023 -11.02511 -10.93772 -10.90481 -10.42070 -10.24960 -9.90739 -9.26165 -9.04046 -8.64027 -8.51208 -7.67454 -6.12531 -4.30787 0.57479 1.08025 1.86110 1.87939 2.76710 3.26929 3.31482 3.34444 3.53274 3.60678 3.86228 4.30460 4.39663 4.60152 4.70619 4.95849 5.12554 5.22269 5.30366 5.44261 5.58638 5.65959 5.72371 5.90994 5.96575 5.98708 6.22405 6.31440 6.44882 6.46679 6.64082 6.97460 7.62442 7.76287 8.19510 8.60762 8.70667 8.80782 9.39457 10.92012 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.029060 B = 0.003309 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.288187 B = 8458.566028 C = 8723.005931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.040 4.040 3 C -0.117 4.117 4 C -0.020 4.020 5 Cl -0.072 7.072 6 C -0.121 4.121 7 C -0.060 4.060 8 C -0.006 4.006 9 C 0.195 3.805 10 N -0.391 5.391 11 O 0.064 5.936 12 C 0.207 3.793 13 C 0.309 3.691 14 H 0.088 0.912 15 N -0.799 5.799 16 C -0.545 4.545 17 H 0.058 0.942 18 C 0.091 3.909 19 N -0.840 5.840 20 Si 0.897 3.103 21 H -0.276 1.276 22 H -0.284 1.284 23 H -0.275 1.275 24 N -0.500 5.500 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.148 0.852 31 H 0.307 0.693 32 H 0.331 0.669 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.882 17.180 2.770 17.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.042 4.042 3 C -0.136 4.136 4 C -0.047 4.047 5 Cl -0.043 7.043 6 C -0.140 4.140 7 C -0.080 4.080 8 C -0.008 4.008 9 C -0.075 4.075 10 N -0.104 5.104 11 O 0.009 5.991 12 C -0.015 4.015 13 C 0.196 3.804 14 H 0.106 0.894 15 N -0.325 5.325 16 C -0.584 4.584 17 H 0.077 0.923 18 C -0.118 4.118 19 N -0.473 5.473 20 Si 0.724 3.276 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.200 1.200 24 N -0.233 5.233 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.118 0.882 28 H 0.155 0.845 29 H 0.157 0.843 30 H 0.165 0.835 31 H 0.118 0.882 32 H 0.144 0.856 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.073 17.083 2.621 17.553 hybrid contribution -0.312 0.686 -0.787 1.090 sum 2.760 17.769 1.834 18.075 Atomic orbital electron populations 1.21196 0.89595 1.04399 1.03454 1.19928 0.97046 0.90907 0.96360 1.20799 0.91799 0.98299 1.02716 1.21037 0.92438 0.87139 1.04122 1.98368 1.76944 1.32129 1.96855 1.20971 1.00703 0.90141 1.02148 1.21239 0.92557 0.98637 0.95594 1.17418 0.92388 0.87461 1.03526 1.23788 0.87535 0.93615 1.02516 1.74779 1.16028 0.96939 1.22663 1.85237 1.36424 1.11611 1.65836 1.32183 0.78278 1.01985 0.89064 1.18411 0.96475 0.70842 0.94656 0.89424 1.59155 1.05303 1.65123 1.02870 1.20583 1.52776 0.92222 0.92866 0.92349 1.24859 0.93694 0.96453 0.96820 1.70064 1.43507 1.02648 1.31090 0.86602 0.79214 0.77790 0.84040 1.20103 1.20984 1.19992 1.72041 1.30343 0.98019 1.22923 0.90547 0.91477 0.88187 0.84458 0.84279 0.83470 0.88196 0.85645 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 9.21 36.01 0.33 -1.29 16 2 C -0.04 -0.54 5.91 -104.30 -0.62 -1.16 16 3 C -0.12 -1.34 9.47 -39.59 -0.37 -1.72 16 4 C -0.02 -0.23 6.32 -39.43 -0.25 -0.48 16 5 Cl -0.07 -0.71 28.95 -51.86 -1.50 -2.21 16 6 C -0.12 -1.39 9.81 -39.59 -0.39 -1.78 16 7 C -0.06 -0.83 9.70 -39.26 -0.38 -1.21 16 8 C -0.01 -0.09 5.88 -104.89 -0.62 -0.71 16 9 C 0.19 3.66 7.67 -156.12 -1.20 2.47 16 10 N -0.39 -7.41 8.71 30.97 0.27 -7.14 16 11 O 0.06 1.29 11.27 18.03 0.20 1.49 16 12 C 0.21 4.39 7.22 -12.99 -0.09 4.29 16 13 C 0.31 7.14 3.16 -70.01 -0.22 6.92 16 14 H 0.09 2.19 8.14 -51.93 -0.42 1.76 16 15 N -0.80 -16.95 8.53 -6.65 -0.06 -17.01 16 16 C -0.55 -14.03 8.71 -34.44 -0.30 -14.33 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.09 2.36 5.39 -17.82 -0.10 2.26 16 19 N -0.84 -22.57 12.77 55.43 0.71 -21.86 16 20 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 N -0.50 -10.34 11.26 -9.88 -0.11 -10.45 16 25 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 27 H 0.10 1.47 5.15 -51.93 -0.27 1.20 16 28 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.15 2.02 7.88 -52.49 -0.41 1.61 16 31 H 0.31 5.71 9.06 -39.29 -0.36 5.36 16 32 H 0.33 6.69 8.96 -39.29 -0.35 6.34 16 33 H 0.26 6.76 8.31 -40.82 -0.34 6.43 16 LS Contribution 308.39 15.07 4.65 4.65 Total: -1.00 -27.21 308.39 -8.11 -35.32 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -3.04 Total: 8.79 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -4.20 Total: -6.73 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.81 Total: -56.46 kcal Atomic # 8 Polarization: 1.29 SS G_CDS: 0.20 Total: 1.49 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.21 -8.11 -35.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248224747.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.819 kcal (2) G-P(sol) polarization free energy of solvation -27.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds