Wall clock time and date at job start Tue Mar 31 2020 07:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38013 * 120.05222 * 2 1 4 4 C 1.38427 * 120.10188 * 180.02562 * 3 2 1 5 5 Cl 1.73602 * 119.88638 * 179.97438 * 4 3 2 6 6 C 1.38462 * 120.22024 * 359.97141 * 4 3 2 7 7 C 1.37976 * 120.10679 * 0.02562 * 6 4 3 8 8 C 1.39317 * 120.05540 * 179.71903 * 2 1 3 9 9 C 1.48413 * 120.10619 * 0.02562 * 8 2 1 10 10 N 1.30767 * 126.41144 * 359.69065 * 9 8 2 11 11 O 1.21290 * 110.09583 * 179.80662 * 10 9 8 12 12 C 1.33672 * 110.02345 * 0.45686 * 11 10 9 13 13 C 1.50705 * 126.43402 * 179.71610 * 12 11 10 14 14 H 1.09001 * 109.47164 * 195.00307 * 13 12 11 15 15 N 1.46905 * 109.47138 * 314.99951 * 13 12 11 16 16 C 1.50698 * 109.47137 * 75.00157 * 13 12 11 17 17 H 1.07994 * 120.00245 * 0.02562 * 16 13 12 18 18 C 1.37880 * 119.99824 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99762 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 120.00101 * 180.02562 * 18 16 13 21 21 H 1.48508 * 109.47100 * 59.99584 * 20 18 16 22 22 H 1.48495 * 109.47585 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47224 * 299.99894 * 20 18 16 24 24 N 1.30968 * 107.12828 * 359.72023 * 12 11 10 25 25 H 1.09002 * 109.47152 * 90.00109 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00210 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00191 * 1 2 3 28 28 H 1.07995 * 119.94825 * 359.97353 * 3 2 1 29 29 H 1.07998 * 119.94975 * 179.97438 * 6 4 3 30 30 H 1.07998 * 120.05236 * 179.97438 * 7 6 4 31 31 H 1.00899 * 110.99802 * 296.05108 * 15 13 12 32 32 H 1.00906 * 110.99753 * 60.00147 * 15 13 12 33 33 H 0.97007 * 119.99667 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1946 0.0000 4 6 3.5825 1.1958 -0.0005 5 17 4.4462 2.7017 -0.0012 6 6 4.2804 0.0000 -0.0005 7 6 3.5984 -1.1995 -0.0004 8 6 2.2048 -1.2058 0.0059 9 6 1.4663 -2.4932 0.0117 10 7 0.1673 -2.6429 0.0175 11 8 -0.1164 -3.8221 0.0173 12 6 0.9977 -4.5608 0.0210 13 6 1.0736 -6.0660 0.0281 14 1 2.0832 -6.3776 0.2959 15 7 0.1198 -6.5998 1.0096 16 6 0.7321 -6.5925 -1.3420 17 1 0.4853 -5.9060 -2.1383 18 6 0.7348 -7.9508 -1.5789 19 7 1.0359 -8.7868 -0.6093 20 14 0.3123 -8.6036 -3.2773 21 1 1.2773 -8.0644 -4.2691 22 1 0.3869 -10.0866 -3.2704 23 1 -1.0628 -8.1784 -3.6431 24 7 2.0108 -3.7309 0.0176 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6582 2.1299 -0.0004 29 1 5.3604 0.0060 -0.0013 30 1 4.1437 -2.1317 -0.0008 31 1 0.3655 -6.3132 1.9453 32 1 -0.8242 -6.3245 0.7832 33 1 1.0382 -9.7424 -0.7761 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248224747.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:36 Heat of formation + Delta-G solvation = 69.279656 kcal Electronic energy + Delta-G solvation = -20210.559112 eV Core-core repulsion = 16878.598496 eV Total energy + Delta-G solvation = -3331.960616 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -46.43746 -40.67293 -37.72332 -37.18227 -36.47460 -34.40680 -33.73393 -32.64376 -31.36117 -28.51133 -28.22976 -25.75522 -25.40329 -23.46950 -23.12486 -21.52703 -19.29192 -18.74084 -18.29228 -17.82198 -17.04423 -16.61580 -16.51133 -16.25447 -15.44555 -15.20713 -15.01056 -14.70961 -14.44000 -14.10653 -13.80049 -13.51487 -13.24197 -13.07961 -12.86893 -12.74951 -12.71081 -12.59545 -12.24107 -12.11755 -11.90325 -11.80604 -11.64852 -10.95055 -10.62374 -10.01373 -9.63669 -9.38705 -8.10490 -6.34623 -0.55513 0.11830 0.34343 0.96934 1.35589 1.48239 1.49129 1.56452 1.93447 2.41905 2.50073 2.52628 2.98548 3.18819 3.61806 3.70509 4.00283 4.03031 4.18601 4.21954 4.37246 4.53565 4.67480 4.71273 4.77915 4.82632 5.02994 5.03713 5.11420 5.28325 5.38219 5.58032 5.62172 5.84056 6.38784 6.81627 6.97558 7.16988 7.38627 8.93814 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.029060 B = 0.003309 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.288187 B = 8458.566028 C = 8723.005931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.043 4.043 3 C -0.110 4.110 4 C -0.016 4.016 5 Cl -0.052 7.052 6 C -0.114 4.114 7 C -0.067 4.067 8 C -0.041 4.041 9 C 0.199 3.801 10 N -0.390 5.390 11 O 0.055 5.945 12 C 0.199 3.801 13 C 0.318 3.682 14 H 0.064 0.936 15 N -0.803 5.803 16 C -0.561 4.561 17 H 0.047 0.953 18 C 0.051 3.949 19 N -0.867 5.867 20 Si 0.955 3.045 21 H -0.275 1.275 22 H -0.278 1.278 23 H -0.272 1.272 24 N -0.513 5.513 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.165 0.835 29 H 0.164 0.836 30 H 0.140 0.860 31 H 0.322 0.678 32 H 0.336 0.664 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.188 19.344 2.411 19.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.045 4.045 3 C -0.129 4.129 4 C -0.043 4.043 5 Cl -0.023 7.023 6 C -0.133 4.133 7 C -0.087 4.087 8 C -0.043 4.043 9 C -0.070 4.070 10 N -0.105 5.105 11 O 0.003 5.997 12 C -0.023 4.023 13 C 0.205 3.795 14 H 0.082 0.918 15 N -0.330 5.330 16 C -0.600 4.600 17 H 0.066 0.934 18 C -0.156 4.156 19 N -0.500 5.500 20 Si 0.780 3.220 21 H -0.201 1.201 22 H -0.203 1.203 23 H -0.197 1.197 24 N -0.247 5.247 25 H 0.095 0.905 26 H 0.115 0.885 27 H 0.095 0.905 28 H 0.183 0.817 29 H 0.181 0.819 30 H 0.158 0.842 31 H 0.135 0.865 32 H 0.150 0.850 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.362 19.244 2.270 19.667 hybrid contribution -0.319 0.220 -0.634 0.744 sum 3.042 19.464 1.635 19.768 Atomic orbital electron populations 1.21173 0.89144 1.04635 1.03490 1.20066 0.97511 0.90800 0.96129 1.21050 0.91988 0.98491 1.01327 1.21184 0.92695 0.87848 1.02584 1.98384 1.76522 1.30772 1.96635 1.21180 1.01863 0.89332 1.00905 1.21248 0.91954 0.99428 0.96051 1.17630 0.93179 0.86790 1.06718 1.24358 0.87515 0.94198 1.00959 1.74844 1.16215 0.96044 1.23365 1.85225 1.36129 1.12115 1.66222 1.31695 0.78976 1.01532 0.90098 1.17939 0.95509 0.72031 0.94055 0.91834 1.58976 1.05284 1.65300 1.03439 1.20796 1.52893 0.92491 0.93856 0.93432 1.25520 0.93526 0.96585 0.99969 1.70154 1.44344 1.02814 1.32721 0.85685 0.78879 0.77358 0.80054 1.20079 1.20317 1.19664 1.72022 1.30524 0.98960 1.23163 0.90547 0.88514 0.90545 0.81722 0.81885 0.84235 0.86524 0.85028 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.21 71.24 0.66 -2.35 16 2 C -0.04 -1.08 5.91 -19.66 -0.12 -1.19 16 3 C -0.11 -2.18 9.47 22.26 0.21 -1.97 16 4 C -0.02 -0.31 6.32 22.37 0.14 -0.16 16 5 Cl -0.05 -0.86 28.95 -2.72 -0.08 -0.94 16 6 C -0.11 -2.37 9.81 22.26 0.22 -2.15 16 7 C -0.07 -1.78 9.70 22.48 0.22 -1.57 16 8 C -0.04 -1.27 5.88 -20.04 -0.12 -1.39 16 9 C 0.20 7.58 7.67 137.29 1.05 8.64 16 10 N -0.39 -14.99 8.71 -59.13 -0.52 -15.51 16 11 O 0.05 2.26 11.27 74.58 0.84 3.10 16 12 C 0.20 8.70 7.22 88.36 0.64 9.34 16 13 C 0.32 15.13 3.16 43.42 0.14 15.27 16 14 H 0.06 3.31 8.14 -2.39 -0.02 3.29 16 15 N -0.80 -34.70 8.53 -174.94 -1.49 -36.19 16 16 C -0.56 -29.46 8.71 25.60 0.22 -29.24 16 17 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 18 C 0.05 2.64 5.39 84.66 0.46 3.10 16 19 N -0.87 -47.00 12.77 21.45 0.27 -46.72 16 20 Si 0.96 41.52 29.54 68.60 2.03 43.55 16 21 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 N -0.51 -21.75 11.26 -302.50 -3.41 -25.16 16 25 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.10 1.64 8.09 -2.39 -0.02 1.63 16 27 H 0.08 2.20 5.15 -2.38 -0.01 2.19 16 28 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 29 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 30 H 0.14 3.87 7.88 -2.91 -0.02 3.85 16 31 H 0.32 12.18 9.06 -89.69 -0.81 11.37 16 32 H 0.34 13.83 8.96 -89.69 -0.80 13.03 16 33 H 0.26 13.66 8.31 -92.70 -0.77 12.89 16 Total: -1.00 -58.22 308.39 0.94 -57.28 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -0.43 Total: 24.26 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 3.72 Total: -3.68 kcal Atomic # 7 Polarization: -118.44 SS G_CDS: -5.14 Total: -123.58 kcal Atomic # 8 Polarization: 2.26 SS G_CDS: 0.84 Total: 3.10 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -58.22 0.94 -57.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248224747.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.560 kcal (2) G-P(sol) polarization free energy of solvation -58.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds