Wall clock time and date at job start Tue Mar 31 2020 07:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38321 * 119.93231 * 2 1 4 4 C 1.38419 * 120.22601 * 179.76798 * 3 2 1 5 5 Cl 1.73608 * 119.95063 * 180.25142 * 4 3 2 6 6 C 1.38156 * 120.09565 * 0.50553 * 4 3 2 7 7 C 1.39295 * 119.86458 * 359.49126 * 6 4 3 8 8 C 1.48421 * 120.11217 * 180.28087 * 7 6 4 9 9 N 1.30760 * 126.40804 * 179.69280 * 8 7 6 10 10 O 1.21294 * 110.09280 * 179.79986 * 9 8 7 11 11 C 1.33659 * 110.02888 * 0.46201 * 10 9 8 12 12 C 1.50700 * 126.44039 * 179.72994 * 11 10 9 13 13 H 1.09009 * 109.47066 * 194.97704 * 12 11 10 14 14 N 1.46897 * 109.47414 * 314.97621 * 12 11 10 15 15 C 1.50700 * 109.47057 * 74.97916 * 12 11 10 16 16 H 1.08000 * 119.99578 * 359.97438 * 15 12 11 17 17 C 1.37870 * 119.99947 * 179.97438 * 15 12 11 18 18 N 1.31511 * 120.00408 * 0.02562 * 17 15 12 19 19 Si 1.86808 * 119.99921 * 179.97438 * 17 15 12 20 20 H 1.48491 * 109.47145 * 60.00129 * 19 17 15 21 21 H 1.48499 * 109.47055 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46888 * 299.99800 * 19 17 15 23 23 N 1.30977 * 107.12272 * 359.71431 * 11 10 9 24 24 C 1.38010 * 119.93680 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.46917 * 269.97899 * 1 2 3 26 26 H 1.08998 * 109.47100 * 29.98642 * 1 2 3 27 27 H 1.09008 * 109.46786 * 149.98292 * 1 2 3 28 28 H 1.08001 * 119.88646 * 0.02562 * 3 2 1 29 29 H 1.08002 * 120.07175 * 179.77477 * 6 4 3 30 30 H 1.00903 * 110.99615 * 59.99587 * 14 12 11 31 31 H 1.00897 * 111.00076 * 183.95264 * 14 12 11 32 32 H 0.97002 * 120.00382 * 180.02562 * 18 17 15 33 33 H 1.08005 * 120.04494 * 359.96032 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1987 0.0000 4 6 3.5814 1.2058 0.0048 5 17 4.4404 2.7145 0.0114 6 6 4.2803 0.0141 -0.0008 7 6 3.5892 -1.1953 -0.0007 8 6 4.3345 -2.4788 -0.0005 9 7 3.8142 -3.6784 0.0052 10 8 4.6934 -4.5140 -0.0004 11 6 5.8903 -3.9191 -0.0005 12 6 7.2315 -4.6064 -0.0008 13 1 8.0077 -3.8885 0.2649 14 7 7.2211 -5.7011 0.9787 15 6 7.5105 -5.1629 -1.3732 16 1 6.7885 -5.0323 -2.1657 17 6 8.6872 -5.8386 -1.6169 18 7 9.5661 -5.9980 -0.6517 19 14 9.0327 -6.5291 -3.3180 20 1 9.0424 -5.4229 -4.3086 21 1 10.3543 -7.2062 -3.3183 22 1 7.9757 -7.5076 -3.6790 23 7 5.6785 -2.6266 -0.0005 24 6 2.1957 -1.1960 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8901 -0.5136 27 1 -0.3633 -0.8899 -0.5141 28 1 1.6542 2.1323 0.0004 29 1 5.3603 0.0201 -0.0007 30 1 6.5094 -6.3803 0.7543 31 1 8.1289 -6.1366 1.0439 32 1 10.3942 -6.4731 -0.8233 33 1 1.6554 -2.1311 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248224755.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:55 Heat of formation + Delta-G solvation = 70.824550 kcal Electronic energy + Delta-G solvation = -19979.189191 eV Core-core repulsion = 16647.295567 eV Total energy + Delta-G solvation = -3331.893624 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.82652 -39.60380 -36.66696 -35.53141 -35.10482 -32.94514 -32.24060 -31.19933 -29.96641 -27.28450 -26.47993 -24.53786 -23.93907 -22.50632 -21.42234 -20.10761 -17.59901 -17.23572 -16.54790 -16.37773 -15.84189 -15.62906 -15.17816 -14.43894 -14.23904 -14.18860 -13.40303 -13.08839 -13.02888 -12.67159 -12.63942 -12.31450 -11.94950 -11.76378 -11.64947 -11.42153 -11.27277 -11.04324 -11.02505 -10.93218 -10.50219 -10.33796 -10.23899 -9.62928 -8.88490 -8.82292 -8.60349 -7.58265 -6.37562 -4.54931 0.68173 1.02357 1.95303 1.98441 2.82934 3.15111 3.20143 3.23596 3.63266 3.63834 3.85154 4.16755 4.39213 4.68304 4.81595 4.90276 4.96530 5.02917 5.16467 5.35906 5.44770 5.56451 5.68602 5.79249 6.03731 6.19619 6.22109 6.30030 6.46583 6.49814 6.62266 7.11182 7.48124 7.61764 8.27330 8.55485 8.78080 8.80750 9.17896 10.63074 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.020752 B = 0.003591 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.916205 B = 7795.181234 C = 8394.286823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.078 4.078 3 C -0.103 4.103 4 C -0.033 4.033 5 Cl -0.067 7.067 6 C -0.075 4.075 7 C 0.016 3.984 8 C 0.191 3.809 9 N -0.394 5.394 10 O 0.077 5.923 11 C 0.258 3.742 12 C 0.295 3.705 13 H 0.088 0.912 14 N -0.848 5.848 15 C -0.559 4.559 16 H 0.061 0.939 17 C 0.076 3.924 18 N -0.887 5.887 19 Si 0.909 3.091 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.273 1.273 23 N -0.500 5.500 24 C -0.085 4.085 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.135 0.865 29 H 0.148 0.852 30 H 0.323 0.677 31 H 0.369 0.631 32 H 0.273 0.727 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.222 11.198 1.588 17.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.079 4.079 3 C -0.122 4.122 4 C -0.060 4.060 5 Cl -0.038 7.038 6 C -0.096 4.096 7 C 0.014 3.986 8 C -0.079 4.079 9 N -0.104 5.104 10 O 0.019 5.981 11 C 0.039 3.961 12 C 0.183 3.817 13 H 0.106 0.894 14 N -0.382 5.382 15 C -0.600 4.600 16 H 0.079 0.921 17 C -0.129 4.129 18 N -0.524 5.524 19 Si 0.736 3.264 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.198 1.198 23 N -0.234 5.234 24 C -0.105 4.105 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.153 0.847 29 H 0.166 0.834 30 H 0.133 0.867 31 H 0.188 0.812 32 H 0.083 0.917 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.826 12.068 2.203 18.484 hybrid contribution 0.818 -0.937 -1.797 2.185 sum -13.008 11.131 0.406 17.125 Atomic orbital electron populations 1.20788 0.90010 1.03248 1.02785 1.19721 0.96560 0.91801 0.99803 1.21005 0.91823 0.98676 1.00686 1.20695 0.92329 0.87120 1.05816 1.98373 1.77255 1.31153 1.96981 1.21124 1.01585 0.89228 0.97653 1.17196 0.91717 0.87818 1.01918 1.23663 0.88120 0.92964 1.03134 1.74754 1.14223 0.99299 1.22090 1.85224 1.13631 1.33673 1.65589 1.29919 0.91255 0.86573 0.88362 1.17809 0.80030 0.91456 0.92428 0.89437 1.59387 1.12886 1.15527 1.50358 1.21518 1.05077 1.37580 0.95801 0.92104 1.24937 0.94905 0.94941 0.98124 1.69695 1.09449 1.40890 1.32398 0.86359 0.77679 0.79276 0.83110 1.19860 1.20800 1.19841 1.71997 1.12091 1.15915 1.23348 1.21176 0.92466 0.98700 0.98184 0.90712 0.91150 0.91015 0.84683 0.83396 0.86743 0.81184 0.91690 0.84544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 2 C -0.08 -0.85 5.87 -104.67 -0.61 -1.47 16 3 C -0.10 -1.10 9.47 -39.48 -0.37 -1.48 16 4 C -0.03 -0.42 6.31 -39.54 -0.25 -0.67 16 5 Cl -0.07 -0.77 28.95 -51.86 -1.50 -2.27 16 6 C -0.08 -1.13 9.48 -39.22 -0.37 -1.51 16 7 C 0.02 0.25 5.88 -104.90 -0.62 -0.36 16 8 C 0.19 3.81 7.80 -156.13 -1.22 2.59 16 9 N -0.39 -8.03 11.86 30.96 0.37 -7.66 16 10 O 0.08 1.66 11.27 18.06 0.20 1.86 16 11 C 0.26 5.85 7.24 -12.99 -0.09 5.75 16 12 C 0.30 7.06 3.25 -70.02 -0.23 6.83 16 13 H 0.09 2.25 8.14 -51.92 -0.42 1.83 16 14 N -0.85 -18.91 9.18 -6.65 -0.06 -18.97 16 15 C -0.56 -14.26 8.71 -34.44 -0.30 -14.56 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 17 C 0.08 1.90 5.38 -17.82 -0.10 1.81 16 18 N -0.89 -22.57 11.54 55.43 0.64 -21.93 16 19 Si 0.91 19.83 29.54 -169.99 -5.02 14.81 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 N -0.50 -10.98 11.26 -9.89 -0.11 -11.09 16 24 C -0.09 -1.15 9.34 -39.25 -0.37 -1.52 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 27 H 0.07 0.51 8.08 -51.92 -0.42 0.09 16 28 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.15 2.33 7.88 -52.49 -0.41 1.92 16 30 H 0.32 6.85 8.96 -39.29 -0.35 6.50 16 31 H 0.37 8.58 7.08 -39.29 -0.28 8.30 16 32 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 33 H 0.14 1.78 7.87 -52.48 -0.41 1.37 16 LS Contribution 312.02 15.07 4.70 4.70 Total: -1.00 -26.15 312.02 -8.06 -34.21 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -3.11 Total: 11.41 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -4.17 Total: -5.07 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: 0.83 Total: -59.65 kcal Atomic # 8 Polarization: 1.66 SS G_CDS: 0.20 Total: 1.86 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -26.15 -8.06 -34.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248224755.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.033 kcal (2) G-P(sol) polarization free energy of solvation -26.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds