Wall clock time and date at job start Tue Mar 31 2020 07:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38321 * 119.93231 * 2 1 4 4 C 1.38419 * 120.22601 * 179.76798 * 3 2 1 5 5 Cl 1.73608 * 119.95063 * 180.25142 * 4 3 2 6 6 C 1.38156 * 120.09565 * 0.50553 * 4 3 2 7 7 C 1.39295 * 119.86458 * 359.49126 * 6 4 3 8 8 C 1.48421 * 120.11217 * 180.28087 * 7 6 4 9 9 N 1.30760 * 126.40804 * 179.69280 * 8 7 6 10 10 O 1.21294 * 110.09280 * 179.79986 * 9 8 7 11 11 C 1.33659 * 110.02888 * 0.46201 * 10 9 8 12 12 C 1.50700 * 126.44039 * 179.72994 * 11 10 9 13 13 H 1.09009 * 109.47066 * 194.97704 * 12 11 10 14 14 N 1.46897 * 109.47414 * 314.97621 * 12 11 10 15 15 C 1.50700 * 109.47057 * 74.97916 * 12 11 10 16 16 H 1.08000 * 119.99578 * 359.97438 * 15 12 11 17 17 C 1.37870 * 119.99947 * 179.97438 * 15 12 11 18 18 N 1.31511 * 120.00408 * 0.02562 * 17 15 12 19 19 Si 1.86808 * 119.99921 * 179.97438 * 17 15 12 20 20 H 1.48491 * 109.47145 * 60.00129 * 19 17 15 21 21 H 1.48499 * 109.47055 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46888 * 299.99800 * 19 17 15 23 23 N 1.30977 * 107.12272 * 359.71431 * 11 10 9 24 24 C 1.38010 * 119.93680 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.46917 * 269.97899 * 1 2 3 26 26 H 1.08998 * 109.47100 * 29.98642 * 1 2 3 27 27 H 1.09008 * 109.46786 * 149.98292 * 1 2 3 28 28 H 1.08001 * 119.88646 * 0.02562 * 3 2 1 29 29 H 1.08002 * 120.07175 * 179.77477 * 6 4 3 30 30 H 1.00903 * 110.99615 * 59.99587 * 14 12 11 31 31 H 1.00897 * 111.00076 * 183.95264 * 14 12 11 32 32 H 0.97002 * 120.00382 * 180.02562 * 18 17 15 33 33 H 1.08005 * 120.04494 * 359.96032 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1987 0.0000 4 6 3.5814 1.2058 0.0048 5 17 4.4404 2.7145 0.0114 6 6 4.2803 0.0141 -0.0008 7 6 3.5892 -1.1953 -0.0007 8 6 4.3345 -2.4788 -0.0005 9 7 3.8142 -3.6784 0.0052 10 8 4.6934 -4.5140 -0.0004 11 6 5.8903 -3.9191 -0.0005 12 6 7.2315 -4.6064 -0.0008 13 1 8.0077 -3.8885 0.2649 14 7 7.2211 -5.7011 0.9787 15 6 7.5105 -5.1629 -1.3732 16 1 6.7885 -5.0323 -2.1657 17 6 8.6872 -5.8386 -1.6169 18 7 9.5661 -5.9980 -0.6517 19 14 9.0327 -6.5291 -3.3180 20 1 9.0424 -5.4229 -4.3086 21 1 10.3543 -7.2062 -3.3183 22 1 7.9757 -7.5076 -3.6790 23 7 5.6785 -2.6266 -0.0005 24 6 2.1957 -1.1960 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8901 -0.5136 27 1 -0.3633 -0.8899 -0.5141 28 1 1.6542 2.1323 0.0004 29 1 5.3603 0.0201 -0.0007 30 1 6.5094 -6.3803 0.7543 31 1 8.1289 -6.1366 1.0439 32 1 10.3942 -6.4731 -0.8233 33 1 1.6554 -2.1311 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248224755.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:55 Heat of formation + Delta-G solvation = 54.288426 kcal Electronic energy + Delta-G solvation = -19979.906251 eV Core-core repulsion = 16647.295567 eV Total energy + Delta-G solvation = -3332.610684 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.47343 -40.62623 -37.64717 -37.31715 -36.71736 -34.28199 -33.62468 -32.75843 -31.35520 -28.46277 -28.02244 -25.91102 -25.69742 -23.92642 -22.56214 -21.58783 -19.33858 -18.71219 -18.34526 -17.66254 -17.33307 -16.75163 -16.54397 -16.26699 -15.39102 -15.11816 -14.92428 -14.47460 -14.27933 -14.09321 -13.78453 -13.36352 -13.29531 -13.20693 -13.08904 -12.83943 -12.70334 -12.56215 -12.33720 -12.24457 -12.02880 -11.98900 -11.97630 -11.18909 -10.80674 -9.80545 -9.79904 -9.46541 -8.30066 -6.55550 -0.50291 0.01092 0.36311 0.97247 1.34901 1.41546 1.43231 1.51094 1.91452 2.31127 2.44992 2.49823 2.87829 3.03085 3.66790 3.82591 3.93172 4.00741 4.13937 4.32813 4.41074 4.51258 4.70515 4.74152 4.81748 4.85385 5.03383 5.15973 5.18901 5.21009 5.35105 5.48821 5.61877 5.67771 6.36189 6.61618 6.92429 7.11110 7.21202 8.69291 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.020752 B = 0.003591 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.916205 B = 7795.181234 C = 8394.286823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.067 4.067 3 C -0.086 4.086 4 C -0.036 4.036 5 Cl -0.057 7.057 6 C -0.089 4.089 7 C -0.018 4.018 8 C 0.199 3.801 9 N -0.398 5.398 10 O 0.067 5.933 11 C 0.248 3.752 12 C 0.301 3.699 13 H 0.063 0.937 14 N -0.839 5.839 15 C -0.579 4.579 16 H 0.049 0.951 17 C 0.040 3.960 18 N -0.903 5.903 19 Si 0.968 3.032 20 H -0.277 1.277 21 H -0.273 1.273 22 H -0.269 1.269 23 N -0.515 5.515 24 C -0.087 4.087 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.171 0.829 29 H 0.130 0.870 30 H 0.330 0.670 31 H 0.365 0.635 32 H 0.278 0.722 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.212 12.486 1.084 19.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.067 4.067 3 C -0.105 4.105 4 C -0.063 4.063 5 Cl -0.028 7.028 6 C -0.109 4.109 7 C -0.020 4.020 8 C -0.072 4.072 9 N -0.110 5.110 10 O 0.013 5.987 11 C 0.028 3.972 12 C 0.189 3.811 13 H 0.081 0.919 14 N -0.372 5.372 15 C -0.619 4.619 16 H 0.068 0.932 17 C -0.163 4.163 18 N -0.540 5.540 19 Si 0.792 3.208 20 H -0.202 1.202 21 H -0.198 1.198 22 H -0.194 1.194 23 N -0.249 5.249 24 C -0.107 4.107 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.188 0.812 29 H 0.148 0.852 30 H 0.140 0.860 31 H 0.183 0.817 32 H 0.087 0.913 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.817 13.333 1.710 20.758 hybrid contribution 1.352 -1.185 -1.603 2.409 sum -14.465 12.148 0.107 18.890 Atomic orbital electron populations 1.20907 0.87004 1.04677 1.04147 1.20120 0.98475 0.90600 0.97531 1.21439 0.90947 1.00133 0.97953 1.20776 0.93217 0.86674 1.05586 1.98378 1.77349 1.30133 1.96916 1.21013 1.00931 0.90027 0.98963 1.17321 0.92835 0.86501 1.05365 1.24302 0.87496 0.94199 1.01159 1.74714 1.13671 0.99414 1.23251 1.85199 1.13356 1.34090 1.66096 1.29626 0.91321 0.86951 0.89296 1.17503 0.80223 0.91229 0.92177 0.91938 1.59328 1.12737 1.15356 1.49741 1.21638 1.05486 1.38592 0.96195 0.93237 1.25605 0.94510 0.94906 1.01310 1.69762 1.09642 1.40847 1.33736 0.85452 0.77851 0.78465 0.78994 1.20218 1.19805 1.19435 1.71991 1.13602 1.15663 1.23664 1.21311 0.91254 1.00120 0.98033 0.89205 0.88855 0.90560 0.81169 0.85185 0.85997 0.81727 0.91281 0.84410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 71.24 0.71 -0.48 16 2 C -0.07 -1.24 5.87 -19.90 -0.12 -1.36 16 3 C -0.09 -1.55 9.47 22.33 0.21 -1.34 16 4 C -0.04 -0.85 6.31 22.29 0.14 -0.71 16 5 Cl -0.06 -1.22 28.95 -2.72 -0.08 -1.30 16 6 C -0.09 -2.67 9.48 22.50 0.21 -2.46 16 7 C -0.02 -0.59 5.88 -20.04 -0.12 -0.71 16 8 C 0.20 8.11 7.80 137.30 1.07 9.18 16 9 N -0.40 -16.58 11.86 -59.16 -0.70 -17.28 16 10 O 0.07 2.97 11.27 74.70 0.84 3.81 16 11 C 0.25 11.64 7.24 88.36 0.64 12.28 16 12 C 0.30 14.94 3.25 43.42 0.14 15.08 16 13 H 0.06 3.38 8.14 -2.38 -0.02 3.37 16 14 N -0.84 -38.33 9.18 -174.95 -1.61 -39.94 16 15 C -0.58 -30.22 8.71 25.60 0.22 -30.00 16 16 H 0.05 2.64 7.74 -2.91 -0.02 2.62 16 17 C 0.04 2.02 5.38 84.65 0.46 2.47 16 18 N -0.90 -46.19 11.54 21.44 0.25 -45.94 16 19 Si 0.97 40.56 29.54 68.60 2.03 42.59 16 20 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 23 N -0.52 -23.51 11.26 -302.54 -3.41 -26.92 16 24 C -0.09 -2.24 9.34 22.48 0.21 -2.03 16 25 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.09 0.64 8.08 -2.39 -0.02 0.62 16 27 H 0.08 0.80 8.08 -2.38 -0.02 0.78 16 28 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 29 H 0.13 4.30 7.88 -2.91 -0.02 4.27 16 30 H 0.33 14.27 8.96 -89.69 -0.80 13.46 16 31 H 0.36 17.29 7.08 -89.70 -0.63 16.65 16 32 H 0.28 13.40 8.31 -92.71 -0.77 12.63 16 33 H 0.14 3.45 7.87 -2.91 -0.02 3.43 16 Total: -1.00 -57.04 312.02 0.85 -56.19 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: -0.26 Total: 28.87 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 3.78 Total: -0.07 kcal Atomic # 7 Polarization: -124.62 SS G_CDS: -5.47 Total: -130.09 kcal Atomic # 8 Polarization: 2.97 SS G_CDS: 0.84 Total: 3.81 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -57.04 0.85 -56.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248224755.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.477 kcal (2) G-P(sol) polarization free energy of solvation -57.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds