Wall clock time and date at job start Tue Mar 31 2020 07:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38165 * 120.06556 * 2 1 4 4 Cl 1.73608 * 119.95218 * 359.95646 * 3 2 1 5 5 C 1.38411 * 120.09554 * 179.97438 * 3 2 1 6 6 C 1.38322 * 120.22576 * 359.97438 * 5 3 2 7 7 C 1.38011 * 120.13397 * 359.78824 * 6 5 3 8 8 C 1.39282 * 120.06899 * 179.97438 * 2 1 3 9 9 C 1.48425 * 120.11615 * 0.02562 * 8 2 1 10 10 N 1.30757 * 126.41062 * 359.97438 * 9 8 2 11 11 O 1.21291 * 110.09546 * 179.75011 * 10 9 8 12 12 C 1.33664 * 110.02668 * 0.40863 * 11 10 9 13 13 C 1.50706 * 126.43522 * 179.86514 * 12 11 10 14 14 H 1.09001 * 109.46953 * 194.68246 * 13 12 11 15 15 N 1.46899 * 109.47101 * 314.68414 * 13 12 11 16 16 C 1.50698 * 109.47294 * 74.68803 * 13 12 11 17 17 H 1.08005 * 119.99819 * 359.97438 * 16 13 12 18 18 C 1.37875 * 120.00046 * 180.02562 * 16 13 12 19 19 N 1.31518 * 119.99944 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99979 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47548 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47233 * 119.99722 * 20 18 16 23 23 H 1.48500 * 109.46790 * 239.99650 * 20 18 16 24 24 N 1.30978 * 107.12247 * 359.59786 * 12 11 10 25 25 H 1.09005 * 109.47122 * 270.01621 * 1 2 3 26 26 H 1.08995 * 109.47480 * 30.01851 * 1 2 3 27 27 H 1.09004 * 109.47214 * 150.01940 * 1 2 3 28 28 H 1.07992 * 119.88834 * 180.02562 * 5 3 2 29 29 H 1.08001 * 119.93068 * 180.02562 * 6 5 3 30 30 H 1.07999 * 120.04445 * 180.25324 * 7 6 5 31 31 H 1.00903 * 110.99644 * 296.04622 * 15 13 12 32 32 H 1.00897 * 110.99782 * 60.00139 * 15 13 12 33 33 H 0.96997 * 119.99752 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1958 0.0000 4 17 1.3316 2.6995 -0.0011 5 6 3.5833 1.1965 0.0005 6 6 4.2802 0.0017 0.0016 7 6 3.5983 -1.1982 0.0066 8 6 2.2048 -1.2054 0.0005 9 6 1.4669 -2.4932 0.0005 10 7 0.1679 -2.6434 0.0005 11 8 -0.1152 -3.8227 -0.0044 12 6 0.9990 -4.5610 0.0008 13 6 1.0755 -6.0661 0.0001 14 1 2.0854 -6.3787 0.2656 15 7 0.1226 -6.6053 0.9796 16 6 0.7333 -6.5859 -1.3724 17 1 0.4849 -5.8954 -2.1648 18 6 0.7364 -7.9430 -1.6161 19 7 1.0384 -8.7838 -0.6510 20 14 0.3115 -8.5873 -3.3172 21 1 0.0109 -7.4458 -4.2182 22 1 1.4622 -9.3550 -3.8574 23 1 -0.8768 -9.4734 -3.2283 24 7 2.0119 -3.7306 0.0007 25 1 -0.3633 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3634 -0.8902 -0.5135 28 1 4.1209 2.1330 0.0010 29 1 5.3602 0.0078 0.0024 30 1 4.1439 -2.1302 0.0115 31 1 0.3689 -6.3234 1.9166 32 1 -0.8215 -6.3292 0.7552 33 1 1.0409 -9.7384 -0.8226 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248225432.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:00 Heat of formation + Delta-G solvation = 88.222924 kcal Electronic energy + Delta-G solvation = -20332.797086 eV Core-core repulsion = 17001.657913 eV Total energy + Delta-G solvation = -3331.139174 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.89504 -39.66426 -36.70243 -35.47306 -34.98837 -33.27439 -31.98159 -31.14153 -30.15047 -27.25391 -26.50675 -24.47325 -23.71492 -22.11168 -21.87271 -20.17510 -17.66243 -17.42471 -16.55408 -16.41915 -15.79773 -15.37216 -14.82867 -14.58957 -14.34094 -14.24068 -13.58739 -13.51384 -13.01461 -12.65484 -12.50458 -12.05988 -11.94377 -11.70607 -11.58876 -11.27661 -11.21558 -10.97351 -10.93538 -10.92740 -10.40130 -10.26840 -9.88959 -9.25664 -8.82027 -8.65284 -8.61812 -7.67026 -6.12530 -4.30464 0.65514 1.00622 1.89891 1.91233 2.78951 3.24380 3.32963 3.36880 3.55371 3.60465 3.85808 4.31352 4.45496 4.62611 4.73045 4.91417 5.12892 5.17960 5.37378 5.47248 5.58637 5.62935 5.71411 5.91790 6.01538 6.10521 6.24761 6.32366 6.42936 6.47829 6.65067 6.97866 7.63234 7.76597 8.20051 8.61273 8.71600 8.81564 9.39857 10.92103 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.029271 B = 0.003489 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.356770 B = 8024.208341 C = 8174.909491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.043 4.043 3 C -0.044 4.044 4 Cl -0.067 7.067 5 C -0.096 4.096 6 C -0.119 4.119 7 C -0.068 4.068 8 C 0.001 3.999 9 C 0.195 3.805 10 N -0.390 5.390 11 O 0.064 5.936 12 C 0.206 3.794 13 C 0.309 3.691 14 H 0.088 0.912 15 N -0.798 5.798 16 C -0.543 4.543 17 H 0.059 0.941 18 C 0.090 3.910 19 N -0.840 5.840 20 Si 0.896 3.104 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.281 1.281 24 N -0.499 5.499 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.144 0.856 31 H 0.307 0.693 32 H 0.331 0.669 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.183 17.239 2.787 17.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.046 4.046 3 C -0.070 4.070 4 Cl -0.038 7.038 5 C -0.115 4.115 6 C -0.137 4.137 7 C -0.088 4.088 8 C -0.001 4.001 9 C -0.074 4.074 10 N -0.103 5.103 11 O 0.009 5.991 12 C -0.016 4.016 13 C 0.195 3.805 14 H 0.106 0.894 15 N -0.324 5.324 16 C -0.583 4.583 17 H 0.078 0.922 18 C -0.119 4.119 19 N -0.473 5.473 20 Si 0.723 3.277 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.206 1.206 24 N -0.233 5.233 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.119 0.881 28 H 0.153 0.847 29 H 0.157 0.843 30 H 0.162 0.838 31 H 0.118 0.882 32 H 0.144 0.856 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.210 17.152 2.627 17.646 hybrid contribution -0.481 0.670 -0.714 1.090 sum 2.729 17.821 1.913 18.130 Atomic orbital electron populations 1.21233 0.89425 1.04756 1.03520 1.19790 0.97385 0.90159 0.97259 1.20576 0.92291 0.86474 1.07696 1.98351 1.77048 1.31435 1.96997 1.21148 0.91732 0.99414 0.99205 1.21043 1.00440 0.91092 1.01097 1.21397 0.92530 0.99478 0.95398 1.17182 0.92297 0.86889 1.03743 1.23727 0.87513 0.93538 1.02629 1.74801 1.16048 0.96905 1.22534 1.85237 1.36417 1.11607 1.65796 1.32187 0.78281 1.01994 0.89098 1.18425 0.96499 0.70813 0.94718 0.89417 1.59152 1.05310 1.65071 1.02911 1.20663 1.52484 0.92270 0.92863 0.92247 1.24864 0.93710 0.96451 0.96840 1.70085 1.43699 1.02420 1.31096 0.86485 0.78231 0.79023 0.83936 1.19728 1.20731 1.20647 1.72033 1.30336 0.97950 1.22939 0.90485 0.91056 0.88134 0.84660 0.84350 0.83809 0.88189 0.85642 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.79 36.00 0.32 -1.52 16 2 C -0.04 -0.62 5.91 -104.26 -0.62 -1.23 16 3 C -0.04 -0.54 6.31 -39.54 -0.25 -0.79 16 4 Cl -0.07 -0.73 27.29 -51.86 -1.42 -2.14 16 5 C -0.10 -1.00 9.82 -39.49 -0.39 -1.38 16 6 C -0.12 -1.25 10.03 -39.63 -0.40 -1.65 16 7 C -0.07 -0.92 9.70 -39.25 -0.38 -1.31 16 8 C 0.00 0.01 5.88 -104.90 -0.62 -0.60 16 9 C 0.20 3.73 7.67 -156.13 -1.20 2.53 16 10 N -0.39 -7.54 8.72 30.96 0.27 -7.27 16 11 O 0.06 1.32 11.28 18.05 0.20 1.52 16 12 C 0.21 4.40 7.22 -12.99 -0.09 4.31 16 13 C 0.31 7.15 3.16 -70.01 -0.22 6.93 16 14 H 0.09 2.19 8.14 -51.93 -0.42 1.77 16 15 N -0.80 -17.03 8.53 -6.65 -0.06 -17.08 16 16 C -0.54 -14.01 8.71 -34.44 -0.30 -14.31 16 17 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 18 C 0.09 2.35 5.39 -17.82 -0.10 2.25 16 19 N -0.84 -22.57 12.77 55.43 0.71 -21.86 16 20 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 N -0.50 -10.38 11.26 -9.89 -0.11 -10.49 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.07 0.87 6.90 -51.93 -0.36 0.51 16 27 H 0.10 1.60 5.18 -51.93 -0.27 1.33 16 28 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.14 1.96 7.88 -52.49 -0.41 1.54 16 31 H 0.31 5.75 9.06 -39.29 -0.36 5.39 16 32 H 0.33 6.73 8.97 -39.29 -0.35 6.38 16 33 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 305.73 15.07 4.61 4.61 Total: -1.00 -27.55 305.73 -8.04 -35.59 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -2.98 Total: 8.72 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -4.24 Total: -6.77 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.81 Total: -56.71 kcal Atomic # 8 Polarization: 1.32 SS G_CDS: 0.20 Total: 1.52 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.42 Total: -2.14 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.55 -8.04 -35.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248225432.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.813 kcal (2) G-P(sol) polarization free energy of solvation -27.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds