Wall clock time and date at job start Tue Mar 31 2020 07:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38165 * 120.06556 * 2 1 4 4 Cl 1.73608 * 119.95218 * 359.95646 * 3 2 1 5 5 C 1.38411 * 120.09554 * 179.97438 * 3 2 1 6 6 C 1.38322 * 120.22576 * 359.97438 * 5 3 2 7 7 C 1.38011 * 120.13397 * 359.78824 * 6 5 3 8 8 C 1.39282 * 120.06899 * 179.97438 * 2 1 3 9 9 C 1.48425 * 120.11615 * 0.02562 * 8 2 1 10 10 N 1.30757 * 126.41062 * 359.97438 * 9 8 2 11 11 O 1.21291 * 110.09546 * 179.75011 * 10 9 8 12 12 C 1.33664 * 110.02668 * 0.40863 * 11 10 9 13 13 C 1.50706 * 126.43522 * 179.86514 * 12 11 10 14 14 H 1.09001 * 109.46953 * 194.68246 * 13 12 11 15 15 N 1.46899 * 109.47101 * 314.68414 * 13 12 11 16 16 C 1.50698 * 109.47294 * 74.68803 * 13 12 11 17 17 H 1.08005 * 119.99819 * 359.97438 * 16 13 12 18 18 C 1.37875 * 120.00046 * 180.02562 * 16 13 12 19 19 N 1.31518 * 119.99944 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99979 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47548 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47233 * 119.99722 * 20 18 16 23 23 H 1.48500 * 109.46790 * 239.99650 * 20 18 16 24 24 N 1.30978 * 107.12247 * 359.59786 * 12 11 10 25 25 H 1.09005 * 109.47122 * 270.01621 * 1 2 3 26 26 H 1.08995 * 109.47480 * 30.01851 * 1 2 3 27 27 H 1.09004 * 109.47214 * 150.01940 * 1 2 3 28 28 H 1.07992 * 119.88834 * 180.02562 * 5 3 2 29 29 H 1.08001 * 119.93068 * 180.02562 * 6 5 3 30 30 H 1.07999 * 120.04445 * 180.25324 * 7 6 5 31 31 H 1.00903 * 110.99644 * 296.04622 * 15 13 12 32 32 H 1.00897 * 110.99782 * 60.00139 * 15 13 12 33 33 H 0.96997 * 119.99752 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1958 0.0000 4 17 1.3316 2.6995 -0.0011 5 6 3.5833 1.1965 0.0005 6 6 4.2802 0.0017 0.0016 7 6 3.5983 -1.1982 0.0066 8 6 2.2048 -1.2054 0.0005 9 6 1.4669 -2.4932 0.0005 10 7 0.1679 -2.6434 0.0005 11 8 -0.1152 -3.8227 -0.0044 12 6 0.9990 -4.5610 0.0008 13 6 1.0755 -6.0661 0.0001 14 1 2.0854 -6.3787 0.2656 15 7 0.1226 -6.6053 0.9796 16 6 0.7333 -6.5859 -1.3724 17 1 0.4849 -5.8954 -2.1648 18 6 0.7364 -7.9430 -1.6161 19 7 1.0384 -8.7838 -0.6510 20 14 0.3115 -8.5873 -3.3172 21 1 0.0109 -7.4458 -4.2182 22 1 1.4622 -9.3550 -3.8574 23 1 -0.8768 -9.4734 -3.2283 24 7 2.0119 -3.7306 0.0007 25 1 -0.3633 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3634 -0.8902 -0.5135 28 1 4.1209 2.1330 0.0010 29 1 5.3602 0.0078 0.0024 30 1 4.1439 -2.1302 0.0115 31 1 0.3689 -6.3234 1.9166 32 1 -0.8215 -6.3292 0.7552 33 1 1.0409 -9.7384 -0.8226 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248225432.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:59 Heat of formation + Delta-G solvation = 70.430171 kcal Electronic energy + Delta-G solvation = -20333.568638 eV Core-core repulsion = 17001.657913 eV Total energy + Delta-G solvation = -3331.910726 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.45266 -40.66895 -37.63997 -37.18061 -36.52258 -34.52687 -33.69906 -32.48078 -31.47937 -28.49406 -28.20733 -25.80664 -25.43671 -23.50669 -23.00226 -21.55270 -19.30086 -18.81397 -18.28721 -17.73738 -17.04708 -16.53945 -16.46086 -16.25328 -15.56103 -15.37096 -15.11348 -14.73160 -14.45557 -14.12681 -13.54597 -13.51361 -13.27294 -12.95112 -12.90195 -12.73861 -12.67017 -12.56983 -12.37291 -12.14597 -11.95351 -11.76660 -11.61861 -10.97012 -10.63396 -9.81310 -9.75780 -9.39561 -8.10991 -6.34849 -0.47647 0.03772 0.36048 0.98958 1.38133 1.45541 1.49160 1.58548 1.93520 2.41477 2.51386 2.54240 2.99563 3.18767 3.62062 3.78763 3.88014 4.10341 4.18162 4.23884 4.41818 4.53947 4.57443 4.63450 4.75400 4.81933 5.06808 5.09648 5.17887 5.29010 5.33125 5.62271 5.62708 5.83704 6.38537 6.81454 6.96875 7.16382 7.38464 8.93719 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.029271 B = 0.003489 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.356770 B = 8024.208341 C = 8174.909491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.054 4.054 3 C -0.050 4.050 4 Cl -0.054 7.054 5 C -0.079 4.079 6 C -0.104 4.104 7 C -0.076 4.076 8 C -0.035 4.035 9 C 0.200 3.800 10 N -0.393 5.393 11 O 0.055 5.945 12 C 0.199 3.801 13 C 0.318 3.682 14 H 0.065 0.935 15 N -0.803 5.803 16 C -0.559 4.559 17 H 0.046 0.954 18 C 0.051 3.949 19 N -0.866 5.866 20 Si 0.957 3.043 21 H -0.276 1.276 22 H -0.276 1.276 23 H -0.275 1.275 24 N -0.510 5.510 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.172 0.828 29 H 0.177 0.823 30 H 0.137 0.863 31 H 0.323 0.677 32 H 0.336 0.664 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.244 19.283 2.467 19.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.057 4.057 3 C -0.076 4.076 4 Cl -0.025 7.025 5 C -0.098 4.098 6 C -0.121 4.121 7 C -0.096 4.096 8 C -0.037 4.037 9 C -0.070 4.070 10 N -0.108 5.108 11 O 0.003 5.997 12 C -0.024 4.024 13 C 0.204 3.796 14 H 0.083 0.917 15 N -0.330 5.330 16 C -0.598 4.598 17 H 0.065 0.935 18 C -0.156 4.156 19 N -0.500 5.500 20 Si 0.782 3.218 21 H -0.201 1.201 22 H -0.202 1.202 23 H -0.201 1.201 24 N -0.244 5.244 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.189 0.811 29 H 0.195 0.805 30 H 0.155 0.845 31 H 0.135 0.865 32 H 0.149 0.851 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.251 19.189 2.316 19.790 hybrid contribution -0.740 0.226 -0.580 0.967 sum 3.510 19.414 1.736 19.806 Atomic orbital electron populations 1.21154 0.89708 1.04206 1.03422 1.19835 0.97425 0.90551 0.97883 1.20718 0.93218 0.86277 1.07417 1.98359 1.77006 1.30224 1.96912 1.21608 0.90984 1.00855 0.96358 1.21439 1.02196 0.89690 0.98824 1.21511 0.91641 1.00744 0.95751 1.17359 0.93318 0.85930 1.07115 1.24325 0.87449 0.94231 1.00967 1.74854 1.16403 0.96085 1.23419 1.85223 1.36174 1.12073 1.66216 1.31733 0.78961 1.01580 0.90096 1.17962 0.95578 0.71935 0.94104 0.91702 1.58977 1.05286 1.65225 1.03495 1.20841 1.52687 0.92506 0.93803 0.93541 1.25515 0.93536 0.96549 0.99993 1.70166 1.44460 1.02665 1.32714 0.85558 0.78153 0.78194 0.79924 1.20064 1.20158 1.20055 1.72011 1.30445 0.98789 1.23151 0.90399 0.89619 0.90452 0.81105 0.80546 0.84498 0.86517 0.85057 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 8.79 71.24 0.63 -2.89 16 2 C -0.05 -1.49 5.91 -19.63 -0.12 -1.61 16 3 C -0.05 -1.09 6.31 22.29 0.14 -0.94 16 4 Cl -0.05 -1.03 27.29 -2.72 -0.07 -1.10 16 5 C -0.08 -1.33 9.82 22.33 0.22 -1.11 16 6 C -0.10 -1.81 10.03 22.24 0.22 -1.59 16 7 C -0.08 -1.97 9.70 22.48 0.22 -1.75 16 8 C -0.04 -1.11 5.88 -20.04 -0.12 -1.23 16 9 C 0.20 7.77 7.67 137.30 1.05 8.82 16 10 N -0.39 -15.60 8.72 -59.16 -0.52 -16.12 16 11 O 0.05 2.31 11.28 74.66 0.84 3.15 16 12 C 0.20 8.76 7.22 88.36 0.64 9.40 16 13 C 0.32 15.17 3.16 43.42 0.14 15.31 16 14 H 0.07 3.38 8.14 -2.39 -0.02 3.36 16 15 N -0.80 -34.90 8.53 -174.95 -1.49 -36.39 16 16 C -0.56 -29.47 8.71 25.60 0.22 -29.24 16 17 H 0.05 2.51 7.74 -2.91 -0.02 2.49 16 18 C 0.05 2.65 5.39 84.65 0.46 3.10 16 19 N -0.87 -46.93 12.77 21.45 0.27 -46.65 16 20 Si 0.96 41.69 29.54 68.60 2.03 43.72 16 21 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 24 N -0.51 -21.79 11.26 -302.53 -3.41 -25.20 16 25 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 26 H 0.09 2.01 6.90 -2.39 -0.02 2.00 16 27 H 0.08 2.50 5.18 -2.38 -0.01 2.49 16 28 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 29 H 0.18 1.74 8.06 -2.91 -0.02 1.72 16 30 H 0.14 3.66 7.88 -2.91 -0.02 3.64 16 31 H 0.32 12.27 9.06 -89.69 -0.81 11.46 16 32 H 0.34 13.94 8.97 -89.70 -0.80 13.14 16 33 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 Total: -1.00 -59.79 305.73 0.93 -58.87 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: -0.43 Total: 23.45 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 3.70 Total: -3.72 kcal Atomic # 7 Polarization: -119.22 SS G_CDS: -5.14 Total: -124.36 kcal Atomic # 8 Polarization: 2.31 SS G_CDS: 0.84 Total: 3.15 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.07 Total: -1.10 kcal Total: -59.79 0.93 -58.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248225432.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.295 kcal (2) G-P(sol) polarization free energy of solvation -59.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds