Wall clock time and date at job start Tue Mar 31 2020 07:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38003 * 119.94674 * 2 1 4 4 C 1.39323 * 119.89227 * 180.02562 * 3 2 1 5 5 C 1.48407 * 120.10525 * 179.97438 * 4 3 2 6 6 N 1.30766 * 126.41701 * 359.70382 * 5 4 3 7 7 O 1.21288 * 110.09429 * 179.80626 * 6 5 4 8 8 C 1.33664 * 110.03090 * 0.46662 * 7 6 5 9 9 C 1.50700 * 126.43861 * 179.71107 * 8 7 6 10 10 H 1.09002 * 109.47383 * 195.00122 * 9 8 7 11 11 N 1.46902 * 109.47130 * 314.99787 * 9 8 7 12 12 C 1.50697 * 109.47193 * 75.00097 * 9 8 7 13 13 H 1.07997 * 120.00107 * 0.02562 * 12 9 8 14 14 C 1.37874 * 120.00236 * 179.97438 * 12 9 8 15 15 N 1.31520 * 119.99858 * 0.02562 * 14 12 9 16 16 Si 1.86798 * 120.00315 * 179.97438 * 14 12 9 17 17 H 1.48496 * 109.47089 * 60.00113 * 16 14 12 18 18 H 1.48498 * 109.47246 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47149 * 300.00209 * 16 14 12 20 20 N 1.30980 * 107.12702 * 359.71433 * 8 7 6 21 21 C 1.39364 * 119.78715 * 0.02562 * 4 3 2 22 22 C 1.37959 * 119.89222 * 0.02562 * 21 4 3 23 23 C 1.38425 * 119.94512 * 180.02562 * 2 1 3 24 24 Cl 1.73596 * 119.89403 * 0.25471 * 23 2 1 25 25 H 1.09004 * 109.47853 * 269.98599 * 1 2 3 26 26 H 1.09008 * 109.47206 * 29.98662 * 1 2 3 27 27 H 1.09000 * 109.47174 * 149.98188 * 1 2 3 28 28 H 1.08003 * 120.05498 * 0.03539 * 3 2 1 29 29 H 1.00904 * 110.99913 * 60.00396 * 11 9 8 30 30 H 1.00895 * 111.00178 * 183.95110 * 11 9 8 31 31 H 0.96997 * 120.00114 * 179.97438 * 15 14 12 32 32 H 1.08000 * 120.05169 * 180.02562 * 21 4 3 33 33 H 1.08002 * 119.94798 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1958 0.0000 4 6 3.5891 1.1945 -0.0005 5 6 4.3347 2.4776 -0.0011 6 7 3.8149 3.6775 -0.0066 7 8 4.6944 4.5127 -0.0015 8 6 5.8911 3.9173 -0.0023 9 6 7.2326 4.6041 -0.0032 10 1 8.0082 3.8861 -0.2697 11 7 7.2215 5.6989 -0.9827 12 6 7.5130 5.1604 1.3689 13 1 6.7923 5.0294 2.1624 14 6 8.6903 5.8358 1.6116 15 7 9.5683 5.9949 0.6454 16 14 9.0377 6.5260 3.3122 17 1 9.0480 5.4198 4.3028 18 1 10.3596 7.2027 3.3113 19 1 7.9813 7.5050 3.6744 20 7 5.6790 2.6248 -0.0021 21 6 4.2803 -0.0157 -0.0016 22 6 3.5827 -1.2059 -0.0027 23 6 2.1980 -1.1995 -0.0005 24 17 1.3258 -2.7004 -0.0079 25 1 -0.3635 -0.0003 1.0277 26 1 -0.3634 0.8902 -0.5137 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6559 2.1311 0.0006 29 1 6.5103 6.3784 -0.7575 30 1 8.1293 6.1341 -1.0488 31 1 10.3964 6.4703 0.8160 32 1 5.3603 -0.0217 -0.0016 33 1 4.1174 -2.1443 -0.0031 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248225687.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:04 Heat of formation + Delta-G solvation = 71.637166 kcal Electronic energy + Delta-G solvation = -19957.946860 eV Core-core repulsion = 16626.088473 eV Total energy + Delta-G solvation = -3331.858386 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.82625 -39.61650 -36.74164 -35.51181 -35.02392 -33.00329 -32.37027 -31.20410 -29.91913 -27.22143 -26.48646 -24.41883 -23.95701 -22.59755 -21.43231 -20.08824 -17.59746 -17.23692 -16.71862 -16.44906 -15.90212 -15.41191 -15.20853 -14.44580 -14.38633 -14.03914 -13.36945 -13.09592 -12.76293 -12.71204 -12.66151 -12.28037 -12.11823 -11.93872 -11.64078 -11.42179 -11.27644 -11.04083 -10.96531 -10.91908 -10.50234 -10.34006 -10.24415 -9.58945 -9.03347 -8.88704 -8.47033 -7.59171 -6.38614 -4.56016 0.61861 1.11186 1.90870 1.97294 2.81995 3.14244 3.19355 3.22792 3.63952 3.65154 3.86581 4.16042 4.39784 4.55722 4.71238 4.90887 5.02445 5.15131 5.36503 5.39694 5.40630 5.57489 5.68292 5.87665 6.02662 6.11841 6.24324 6.32479 6.46465 6.52528 6.61401 7.10128 7.47180 7.60857 8.26439 8.54589 8.77404 8.80412 9.16861 10.62006 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.031433 B = 0.003114 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.561644 B = 8990.847782 C = 9182.476609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.080 4.080 3 C -0.079 4.079 4 C 0.008 3.992 5 C 0.190 3.810 6 N -0.394 5.394 7 O 0.076 5.924 8 C 0.258 3.742 9 C 0.295 3.705 10 H 0.088 0.912 11 N -0.849 5.849 12 C -0.560 4.560 13 H 0.061 0.939 14 C 0.075 3.925 15 N -0.887 5.887 16 Si 0.909 3.091 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.273 1.273 20 N -0.501 5.501 21 C -0.072 4.072 22 C -0.108 4.108 23 C -0.029 4.029 24 Cl -0.070 7.070 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.139 0.861 29 H 0.323 0.677 30 H 0.369 0.631 31 H 0.273 0.727 32 H 0.147 0.853 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.929 -11.230 -1.543 17.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.081 4.081 3 C -0.099 4.099 4 C 0.006 3.994 5 C -0.080 4.080 6 N -0.105 5.105 7 O 0.019 5.981 8 C 0.038 3.962 9 C 0.183 3.817 10 H 0.105 0.895 11 N -0.382 5.382 12 C -0.600 4.600 13 H 0.079 0.921 14 C -0.129 4.129 15 N -0.524 5.524 16 Si 0.736 3.264 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.198 1.198 20 N -0.234 5.234 21 C -0.092 4.092 22 C -0.127 4.127 23 C -0.056 4.056 24 Cl -0.041 7.041 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.157 0.843 29 H 0.133 0.867 30 H 0.188 0.812 31 H 0.083 0.917 32 H 0.165 0.835 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.694 -12.100 -2.160 18.401 hybrid contribution 0.645 0.953 1.810 2.145 sum -13.049 -11.147 -0.349 17.165 Atomic orbital electron populations 1.20862 0.89903 1.03567 1.03048 1.19612 0.96895 0.90838 1.00737 1.21021 0.92499 0.97916 0.98433 1.17449 0.91802 0.88442 1.01721 1.23731 0.88134 0.93047 1.03057 1.74757 1.14231 0.99383 1.22087 1.85224 1.13618 1.33706 1.65588 1.29917 0.91271 0.86589 0.88390 1.17800 0.80021 0.91453 0.92411 0.89468 1.59389 1.12916 1.15529 1.50333 1.21524 1.05077 1.37615 0.95796 0.92100 1.24943 0.94908 0.94944 0.98139 1.69697 1.09489 1.40878 1.32381 0.86356 0.77683 0.79280 0.83082 1.19855 1.20804 1.19836 1.71992 1.12085 1.15909 1.23400 1.21231 1.01328 0.89935 0.96683 1.20975 0.91661 0.99087 1.00979 1.20925 0.92397 0.86595 1.05722 1.98350 1.76686 1.32238 1.96831 0.90556 0.90896 0.90731 0.84277 0.86734 0.81191 0.91685 0.83497 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.61 36.00 0.35 -0.70 16 2 C -0.08 -0.94 5.88 -104.64 -0.62 -1.55 16 3 C -0.08 -1.08 9.34 -39.26 -0.37 -1.44 16 4 C 0.01 0.12 5.88 -104.89 -0.62 -0.49 16 5 C 0.19 3.74 7.80 -156.11 -1.22 2.52 16 6 N -0.39 -8.02 11.86 30.97 0.37 -7.65 16 7 O 0.08 1.65 11.27 18.05 0.20 1.85 16 8 C 0.26 5.78 7.24 -12.99 -0.09 5.69 16 9 C 0.30 7.01 3.25 -70.02 -0.23 6.78 16 10 H 0.09 2.22 8.14 -51.93 -0.42 1.80 16 11 N -0.85 -18.80 9.18 -6.65 -0.06 -18.86 16 12 C -0.56 -14.20 8.71 -34.44 -0.30 -14.50 16 13 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 14 C 0.08 1.88 5.38 -17.82 -0.10 1.79 16 15 N -0.89 -22.46 11.54 55.43 0.64 -21.82 16 16 Si 0.91 19.73 29.54 -169.99 -5.02 14.71 16 17 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 20 N -0.50 -10.80 11.26 -9.88 -0.11 -10.92 16 21 C -0.07 -1.01 9.70 -39.26 -0.38 -1.39 16 22 C -0.11 -1.26 9.81 -39.60 -0.39 -1.65 16 23 C -0.03 -0.34 6.32 -39.43 -0.25 -0.58 16 24 Cl -0.07 -0.69 27.27 -51.86 -1.41 -2.11 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.58 8.08 -51.92 -0.42 0.16 16 27 H 0.07 0.61 6.88 -51.93 -0.36 0.26 16 28 H 0.14 1.84 7.87 -52.48 -0.41 1.43 16 29 H 0.32 6.82 8.96 -39.29 -0.35 6.47 16 30 H 0.37 8.53 7.08 -39.29 -0.28 8.25 16 31 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 32 H 0.15 2.06 7.88 -52.49 -0.41 1.65 16 33 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 309.30 15.07 4.66 4.66 Total: -1.00 -25.89 309.30 -7.99 -33.88 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -3.04 Total: 11.78 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -4.21 Total: -5.53 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 0.83 Total: -59.25 kcal Atomic # 8 Polarization: 1.65 SS G_CDS: 0.20 Total: 1.85 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.41 Total: -2.11 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -25.89 -7.99 -33.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248225687.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.514 kcal (2) G-P(sol) polarization free energy of solvation -25.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds