Wall clock time and date at job start Tue Mar 31 2020 07:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38003 * 119.94674 * 2 1 4 4 C 1.39323 * 119.89227 * 180.02562 * 3 2 1 5 5 C 1.48407 * 120.10525 * 179.97438 * 4 3 2 6 6 N 1.30766 * 126.41701 * 359.70382 * 5 4 3 7 7 O 1.21288 * 110.09429 * 179.80626 * 6 5 4 8 8 C 1.33664 * 110.03090 * 0.46662 * 7 6 5 9 9 C 1.50700 * 126.43861 * 179.71107 * 8 7 6 10 10 H 1.09002 * 109.47383 * 195.00122 * 9 8 7 11 11 N 1.46902 * 109.47130 * 314.99787 * 9 8 7 12 12 C 1.50697 * 109.47193 * 75.00097 * 9 8 7 13 13 H 1.07997 * 120.00107 * 0.02562 * 12 9 8 14 14 C 1.37874 * 120.00236 * 179.97438 * 12 9 8 15 15 N 1.31520 * 119.99858 * 0.02562 * 14 12 9 16 16 Si 1.86798 * 120.00315 * 179.97438 * 14 12 9 17 17 H 1.48496 * 109.47089 * 60.00113 * 16 14 12 18 18 H 1.48498 * 109.47246 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47149 * 300.00209 * 16 14 12 20 20 N 1.30980 * 107.12702 * 359.71433 * 8 7 6 21 21 C 1.39364 * 119.78715 * 0.02562 * 4 3 2 22 22 C 1.37959 * 119.89222 * 0.02562 * 21 4 3 23 23 C 1.38425 * 119.94512 * 180.02562 * 2 1 3 24 24 Cl 1.73596 * 119.89403 * 0.25471 * 23 2 1 25 25 H 1.09004 * 109.47853 * 269.98599 * 1 2 3 26 26 H 1.09008 * 109.47206 * 29.98662 * 1 2 3 27 27 H 1.09000 * 109.47174 * 149.98188 * 1 2 3 28 28 H 1.08003 * 120.05498 * 0.03539 * 3 2 1 29 29 H 1.00904 * 110.99913 * 60.00396 * 11 9 8 30 30 H 1.00895 * 111.00178 * 183.95110 * 11 9 8 31 31 H 0.96997 * 120.00114 * 179.97438 * 15 14 12 32 32 H 1.08000 * 120.05169 * 180.02562 * 21 4 3 33 33 H 1.08002 * 119.94798 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1958 0.0000 4 6 3.5891 1.1945 -0.0005 5 6 4.3347 2.4776 -0.0011 6 7 3.8149 3.6775 -0.0066 7 8 4.6944 4.5127 -0.0015 8 6 5.8911 3.9173 -0.0023 9 6 7.2326 4.6041 -0.0032 10 1 8.0082 3.8861 -0.2697 11 7 7.2215 5.6989 -0.9827 12 6 7.5130 5.1604 1.3689 13 1 6.7923 5.0294 2.1624 14 6 8.6903 5.8358 1.6116 15 7 9.5683 5.9949 0.6454 16 14 9.0377 6.5260 3.3122 17 1 9.0480 5.4198 4.3028 18 1 10.3596 7.2027 3.3113 19 1 7.9813 7.5050 3.6744 20 7 5.6790 2.6248 -0.0021 21 6 4.2803 -0.0157 -0.0016 22 6 3.5827 -1.2059 -0.0027 23 6 2.1980 -1.1995 -0.0005 24 17 1.3258 -2.7004 -0.0079 25 1 -0.3635 -0.0003 1.0277 26 1 -0.3634 0.8902 -0.5137 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6559 2.1311 0.0006 29 1 6.5103 6.3784 -0.7575 30 1 8.1293 6.1341 -1.0488 31 1 10.3964 6.4703 0.8160 32 1 5.3603 -0.0217 -0.0016 33 1 4.1174 -2.1443 -0.0031 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248225687.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:03 Heat of formation + Delta-G solvation = 55.525828 kcal Electronic energy + Delta-G solvation = -19958.645500 eV Core-core repulsion = 16626.088473 eV Total energy + Delta-G solvation = -3332.557026 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.45335 -40.63347 -37.68209 -37.29128 -36.59662 -34.20558 -33.82002 -32.79765 -31.30053 -28.45516 -28.02296 -25.80031 -25.68039 -23.95864 -22.62289 -21.55201 -19.32166 -18.67157 -18.33186 -17.85326 -17.33384 -16.68097 -16.57140 -16.26376 -15.26805 -15.09909 -14.92008 -14.46144 -14.31738 -14.09735 -13.62316 -13.48660 -13.25671 -13.19825 -13.13120 -12.88828 -12.82582 -12.51825 -12.36224 -12.29481 -12.04877 -11.99902 -11.74656 -11.15879 -10.79783 -10.01890 -9.61229 -9.45481 -8.29581 -6.54990 -0.55443 0.12588 0.35801 0.99448 1.34339 1.41870 1.43726 1.51483 1.93520 2.31754 2.46870 2.51598 2.88700 3.03489 3.64716 3.67278 3.93954 4.04310 4.26147 4.38246 4.42754 4.51298 4.68806 4.73390 4.74971 4.80638 5.04440 5.14868 5.18740 5.23953 5.29101 5.49515 5.57043 5.68755 6.36915 6.62507 6.93003 7.13139 7.21798 8.69678 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.031433 B = 0.003114 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.561644 B = 8990.847782 C = 9182.476609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.076 4.076 3 C -0.079 4.079 4 C -0.026 4.026 5 C 0.199 3.801 6 N -0.401 5.401 7 O 0.065 5.935 8 C 0.247 3.753 9 C 0.302 3.698 10 H 0.064 0.936 11 N -0.839 5.839 12 C -0.579 4.579 13 H 0.049 0.951 14 C 0.040 3.960 15 N -0.903 5.903 16 Si 0.968 3.032 17 H -0.276 1.276 18 H -0.274 1.274 19 H -0.270 1.270 20 N -0.512 5.512 21 C -0.077 4.077 22 C -0.100 4.100 23 C -0.026 4.026 24 Cl -0.048 7.048 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.140 0.860 29 H 0.330 0.670 30 H 0.364 0.636 31 H 0.277 0.723 32 H 0.140 0.860 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.277 -12.541 -1.033 19.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.077 4.077 3 C -0.100 4.100 4 C -0.028 4.028 5 C -0.071 4.071 6 N -0.114 5.114 7 O 0.012 5.988 8 C 0.027 3.973 9 C 0.189 3.811 10 H 0.082 0.918 11 N -0.372 5.372 12 C -0.619 4.619 13 H 0.068 0.932 14 C -0.163 4.163 15 N -0.540 5.540 16 Si 0.792 3.208 17 H -0.201 1.201 18 H -0.199 1.199 19 H -0.195 1.195 20 N -0.246 5.246 21 C -0.098 4.098 22 C -0.119 4.119 23 C -0.054 4.054 24 Cl -0.019 7.019 25 H 0.107 0.893 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.158 0.842 29 H 0.140 0.860 30 H 0.183 0.817 31 H 0.087 0.913 32 H 0.158 0.842 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -15.047 -13.391 -1.661 20.211 hybrid contribution 0.960 1.187 1.618 2.224 sum -14.087 -12.203 -0.043 18.638 Atomic orbital electron populations 1.20954 0.87695 1.04579 1.04128 1.19889 0.98403 0.90081 0.99304 1.21066 0.91564 0.98922 0.98409 1.17614 0.92729 0.87388 1.05075 1.24359 0.87552 0.94197 1.01028 1.74724 1.13738 0.99595 1.23333 1.85200 1.13376 1.34148 1.66120 1.29630 0.91307 0.87013 0.89352 1.17495 0.80258 0.91229 0.92089 0.91834 1.59334 1.12746 1.15371 1.49744 1.21651 1.05454 1.38601 0.96231 0.93235 1.25605 0.94539 0.94924 1.01279 1.69764 1.09683 1.40856 1.33694 0.85457 0.77804 0.78480 0.79052 1.20135 1.19855 1.19526 1.71982 1.13438 1.15549 1.23624 1.21235 1.01188 0.90204 0.97133 1.21198 0.91935 0.99141 0.99600 1.21095 0.92591 0.87504 1.04189 1.98365 1.76165 1.30763 1.96596 0.89310 0.89918 0.89754 0.84233 0.86037 0.81745 0.91289 0.84168 0.81657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 9.61 71.24 0.68 -1.06 16 2 C -0.08 -1.61 5.88 -19.88 -0.12 -1.72 16 3 C -0.08 -2.10 9.34 22.48 0.21 -1.89 16 4 C -0.03 -0.83 5.88 -20.04 -0.12 -0.95 16 5 C 0.20 7.93 7.80 137.29 1.07 9.01 16 6 N -0.40 -16.59 11.86 -59.14 -0.70 -17.29 16 7 O 0.07 2.89 11.27 74.66 0.84 3.73 16 8 C 0.25 11.40 7.24 88.36 0.64 12.04 16 9 C 0.30 14.76 3.25 43.42 0.14 14.90 16 10 H 0.06 3.38 8.14 -2.39 -0.02 3.36 16 11 N -0.84 -37.96 9.18 -174.95 -1.61 -39.57 16 12 C -0.58 -29.94 8.71 25.60 0.22 -29.72 16 13 H 0.05 2.62 7.74 -2.91 -0.02 2.60 16 14 C 0.04 1.99 5.38 84.65 0.46 2.45 16 15 N -0.90 -45.82 11.54 21.45 0.25 -45.57 16 16 Si 0.97 40.25 29.54 68.60 2.03 42.27 16 17 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 19 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 20 N -0.51 -22.70 11.26 -302.52 -3.41 -26.10 16 21 C -0.08 -2.12 9.70 22.47 0.22 -1.90 16 22 C -0.10 -2.13 9.81 22.26 0.22 -1.91 16 23 C -0.03 -0.54 6.32 22.37 0.14 -0.40 16 24 Cl -0.05 -0.80 27.27 -2.72 -0.07 -0.87 16 25 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.08 1.10 8.08 -2.38 -0.02 1.08 16 27 H 0.08 1.11 6.88 -2.39 -0.02 1.09 16 28 H 0.14 3.60 7.87 -2.91 -0.02 3.58 16 29 H 0.33 14.15 8.96 -89.69 -0.80 13.34 16 30 H 0.36 17.12 7.08 -89.70 -0.63 16.49 16 31 H 0.28 13.30 8.31 -92.71 -0.77 12.53 16 32 H 0.14 3.96 7.88 -2.91 -0.02 3.94 16 33 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -55.11 309.30 0.84 -54.27 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: -0.25 Total: 30.29 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 3.77 Total: -1.15 kcal Atomic # 7 Polarization: -123.06 SS G_CDS: -5.47 Total: -128.53 kcal Atomic # 8 Polarization: 2.89 SS G_CDS: 0.84 Total: 3.73 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.27 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.07 Total: -0.87 kcal Total: -55.11 0.84 -54.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248225687.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.791 kcal (2) G-P(sol) polarization free energy of solvation -55.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds