Wall clock time and date at job start Tue Mar 31 2020 06:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00212 * 2 1 4 4 H 1.48507 * 109.46808 * 269.99583 * 3 2 1 5 5 H 1.48495 * 109.47093 * 29.99391 * 3 2 1 6 6 H 1.48496 * 109.46947 * 149.99831 * 3 2 1 7 7 C 1.37877 * 119.99606 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00247 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00223 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47225 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47148 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47252 * 179.97438 * 11 10 9 13 13 C 1.38602 * 120.42392 * 100.02144 * 12 11 10 14 14 C 1.38676 * 118.43778 * 179.73284 * 13 12 11 15 15 C 1.38188 * 119.18574 * 0.48943 * 14 13 12 16 16 C 1.50706 * 119.60411 * 179.77692 * 15 14 13 17 17 F 1.39900 * 109.46715 * 184.72469 * 16 15 14 18 18 F 1.39897 * 109.47068 * 304.72380 * 16 15 14 19 19 F 1.39895 * 109.47042 * 64.72689 * 16 15 14 20 20 N 1.31874 * 120.78306 * 359.50003 * 15 14 13 21 21 C 1.31976 * 121.70744 * 0.25059 * 20 15 14 22 22 Cl 1.73598 * 119.63285 * 180.02562 * 21 20 15 23 23 H 0.97001 * 119.99865 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47310 * 59.98936 * 9 7 2 25 25 H 1.09001 * 109.46617 * 299.99356 * 9 7 2 26 26 H 1.09003 * 109.47069 * 59.99784 * 10 9 7 27 27 H 1.09001 * 109.46975 * 299.99354 * 10 9 7 28 28 H 1.09003 * 109.47081 * 60.00074 * 11 10 9 29 29 H 1.09001 * 109.46886 * 299.99691 * 11 10 9 30 30 H 1.08001 * 120.78243 * 359.97438 * 13 12 11 31 31 H 1.07999 * 120.40443 * 180.27007 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6621 0.0005 11 6 1.4800 -4.9872 0.0012 12 6 2.4592 -6.1327 0.0005 13 6 2.7580 -6.8012 1.1773 14 6 3.6606 -7.8529 1.1284 15 6 4.2364 -8.1911 -0.0814 16 6 5.2224 -9.3291 -0.1445 17 9 5.7500 -9.4178 -1.4371 18 9 6.2582 -9.0997 0.7674 19 9 4.5740 -10.5262 0.1776 20 7 3.9292 -7.5333 -1.1824 21 6 3.0710 -6.5307 -1.1748 22 17 2.7055 -5.7025 -2.6560 23 1 -0.4850 0.8401 -0.0004 24 1 0.6244 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 2.8717 -3.6044 0.8905 27 1 2.8716 -3.6045 -0.8895 28 1 0.8530 -5.0451 -0.8886 29 1 0.8536 -5.0446 0.8914 30 1 2.2958 -6.5125 2.1097 31 1 3.9131 -8.3986 2.0255 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066054.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:59 Heat of formation + Delta-G solvation = -142.045107 kcal Electronic energy + Delta-G solvation = -20426.483620 eV Core-core repulsion = 16511.209783 eV Total energy + Delta-G solvation = -3915.273836 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.049 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.38284 -47.92946 -47.81245 -40.76988 -36.78246 -35.52342 -33.27684 -32.42842 -31.21919 -28.16796 -25.80563 -24.17557 -23.52263 -21.93521 -20.28498 -19.03405 -18.78046 -18.72651 -17.08911 -16.43551 -15.69808 -15.49726 -15.00382 -14.63553 -14.63294 -14.45272 -14.29437 -14.05542 -13.99170 -13.97318 -13.78418 -12.98428 -12.48052 -12.39996 -11.99503 -11.88029 -11.58346 -11.15008 -10.90530 -10.85715 -10.58751 -10.18792 -10.07746 -9.78193 -9.49620 -9.25277 -8.96432 -8.38849 -6.04176 -4.06541 0.34348 0.71638 1.60227 2.26759 3.03342 3.28344 3.29778 3.36312 3.39497 3.70660 4.12518 4.34290 4.40893 4.46484 4.56530 4.70817 4.89472 5.31969 5.36692 5.49458 5.76699 5.86137 5.88080 6.20379 6.55231 6.69851 6.99655 7.11758 7.61232 7.73857 7.94991 8.37207 9.00169 9.57959 11.07052 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.027762 B = 0.003341 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.329564 B = 8379.089035 C = 8545.003772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.105 4.105 11 C -0.090 4.090 12 C -0.064 4.064 13 C -0.065 4.065 14 C -0.115 4.115 15 C 0.034 3.966 16 C 0.526 3.474 17 F -0.161 7.161 18 F -0.171 7.171 19 F -0.172 7.172 20 N -0.438 5.438 21 C 0.174 3.826 22 Cl -0.002 7.002 23 H 0.261 0.739 24 H 0.018 0.982 25 H 0.017 0.983 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.160 0.840 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.444 -19.073 1.848 20.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.143 4.143 11 C -0.128 4.128 12 C -0.067 4.067 13 C -0.091 4.091 14 C -0.136 4.136 15 C -0.106 4.106 16 C 0.471 3.529 17 F -0.143 7.143 18 F -0.152 7.152 19 F -0.153 7.153 20 N -0.148 5.148 21 C 0.008 3.992 22 Cl 0.027 6.973 23 H 0.070 0.930 24 H 0.037 0.963 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.177 0.823 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.686 -19.161 0.918 20.315 hybrid contribution 0.269 1.033 0.544 1.198 sum 6.955 -18.128 1.463 19.471 Atomic orbital electron populations 1.69955 1.06034 1.26647 1.50810 1.25004 0.94836 0.99229 0.95275 0.86614 0.79870 0.83496 0.78170 1.20630 1.21209 1.19874 1.21227 0.93044 0.91005 1.50671 0.92710 1.19090 0.93833 0.91022 0.97412 1.21685 0.99295 0.92232 1.01042 1.21005 0.95818 0.91795 1.04198 1.21228 0.96940 0.96994 0.91519 1.21621 0.95631 0.93088 0.98729 1.21855 0.96087 0.97715 0.97894 1.20630 1.00703 0.98293 0.90946 1.17784 0.79564 0.81205 0.74368 1.93243 1.87138 1.96323 1.37548 1.93235 1.60114 1.94516 1.67332 1.93231 1.81319 1.48138 1.92625 1.66420 1.12680 1.05857 1.29818 1.21507 0.95241 0.93086 0.89371 1.98451 1.92117 1.74443 1.32284 0.92974 0.96338 0.96468 0.93117 0.92591 0.89651 0.89973 0.82279 0.83041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.10 -1.98 5.09 -26.73 -0.14 -2.11 16 11 C -0.09 -1.33 4.82 -27.88 -0.13 -1.47 16 12 C -0.06 -0.84 5.16 -104.45 -0.54 -1.38 16 13 C -0.07 -0.68 9.82 -39.29 -0.39 -1.06 16 14 C -0.12 -1.14 9.61 -39.44 -0.38 -1.52 16 15 C 0.03 0.41 6.26 -82.59 -0.52 -0.10 16 16 C 0.53 5.96 3.31 36.01 0.12 6.08 16 17 F -0.16 -2.06 16.85 2.25 0.04 -2.03 16 18 F -0.17 -1.83 17.16 2.25 0.04 -1.79 16 19 F -0.17 -1.82 17.28 2.25 0.04 -1.78 16 20 N -0.44 -6.34 9.72 -6.62 -0.06 -6.40 16 21 C 0.17 2.51 7.27 -17.45 -0.13 2.39 16 22 Cl 0.00 -0.03 26.80 -51.86 -1.39 -1.42 16 23 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 1.08 7.27 -51.93 -0.38 0.70 16 28 H 0.09 1.27 7.37 -51.93 -0.38 0.89 16 29 H 0.08 1.09 8.03 -51.93 -0.42 0.67 16 30 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 302.11 15.07 4.55 4.55 Total: -1.00 -29.86 302.11 -6.55 -36.42 By element: Atomic # 1 Polarization: -3.63 SS G_CDS: -2.83 Total: -6.46 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -2.65 Total: -11.86 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.67 Total: -31.92 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 0.12 Total: -5.60 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -1.39 Total: -1.42 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.86 -6.55 -36.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066054.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.629 kcal (2) G-P(sol) polarization free energy of solvation -29.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds