Wall clock time and date at job start Tue Mar 31 2020 06:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00212 * 2 1 4 4 H 1.48507 * 109.46808 * 269.99583 * 3 2 1 5 5 H 1.48495 * 109.47093 * 29.99391 * 3 2 1 6 6 H 1.48496 * 109.46947 * 149.99831 * 3 2 1 7 7 C 1.37877 * 119.99606 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00247 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00223 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47225 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47148 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47252 * 179.97438 * 11 10 9 13 13 C 1.38602 * 120.42392 * 100.02144 * 12 11 10 14 14 C 1.38676 * 118.43778 * 179.73284 * 13 12 11 15 15 C 1.38188 * 119.18574 * 0.48943 * 14 13 12 16 16 C 1.50706 * 119.60411 * 179.77692 * 15 14 13 17 17 F 1.39900 * 109.46715 * 184.72469 * 16 15 14 18 18 F 1.39897 * 109.47068 * 304.72380 * 16 15 14 19 19 F 1.39895 * 109.47042 * 64.72689 * 16 15 14 20 20 N 1.31874 * 120.78306 * 359.50003 * 15 14 13 21 21 C 1.31976 * 121.70744 * 0.25059 * 20 15 14 22 22 Cl 1.73598 * 119.63285 * 180.02562 * 21 20 15 23 23 H 0.97001 * 119.99865 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47310 * 59.98936 * 9 7 2 25 25 H 1.09001 * 109.46617 * 299.99356 * 9 7 2 26 26 H 1.09003 * 109.47069 * 59.99784 * 10 9 7 27 27 H 1.09001 * 109.46975 * 299.99354 * 10 9 7 28 28 H 1.09003 * 109.47081 * 60.00074 * 11 10 9 29 29 H 1.09001 * 109.46886 * 299.99691 * 11 10 9 30 30 H 1.08001 * 120.78243 * 359.97438 * 13 12 11 31 31 H 1.07999 * 120.40443 * 180.27007 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6621 0.0005 11 6 1.4800 -4.9872 0.0012 12 6 2.4592 -6.1327 0.0005 13 6 2.7580 -6.8012 1.1773 14 6 3.6606 -7.8529 1.1284 15 6 4.2364 -8.1911 -0.0814 16 6 5.2224 -9.3291 -0.1445 17 9 5.7500 -9.4178 -1.4371 18 9 6.2582 -9.0997 0.7674 19 9 4.5740 -10.5262 0.1776 20 7 3.9292 -7.5333 -1.1824 21 6 3.0710 -6.5307 -1.1748 22 17 2.7055 -5.7025 -2.6560 23 1 -0.4850 0.8401 -0.0004 24 1 0.6244 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 2.8717 -3.6044 0.8905 27 1 2.8716 -3.6045 -0.8895 28 1 0.8530 -5.0451 -0.8886 29 1 0.8536 -5.0446 0.8914 30 1 2.2958 -6.5125 2.1097 31 1 3.9131 -8.3986 2.0255 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066054.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:59 Heat of formation + Delta-G solvation = -157.974338 kcal Electronic energy + Delta-G solvation = -20427.174363 eV Core-core repulsion = 16511.209783 eV Total energy + Delta-G solvation = -3915.964580 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.049 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.26714 -48.78188 -48.73620 -41.72766 -37.85552 -36.89614 -35.00360 -33.48251 -32.68035 -29.58105 -27.18076 -25.37129 -24.71693 -23.16959 -21.86581 -19.93060 -19.65353 -19.64037 -18.47712 -18.05514 -16.74096 -16.61562 -16.31782 -15.96225 -15.60359 -15.52187 -15.45940 -15.16953 -14.88774 -14.87753 -14.67027 -14.44025 -14.02522 -13.69342 -13.35074 -13.04844 -12.99690 -12.73065 -12.58598 -12.42265 -12.21990 -11.53109 -11.39724 -11.26813 -11.02330 -10.89285 -10.51845 -10.16112 -8.17762 -6.27367 -0.59399 -0.18556 0.58655 1.35165 1.41316 1.41798 1.52557 2.09546 2.38348 2.42694 2.81749 3.16090 3.25202 3.44903 3.47423 3.65169 3.85848 3.99538 4.33375 4.42910 4.57684 4.73591 4.81594 5.10634 5.16153 5.20320 5.28357 5.56208 5.80274 5.90275 6.15947 6.28994 6.89766 7.41563 8.93608 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.027762 B = 0.003341 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.329564 B = 8379.089035 C = 8545.003772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.957 3.043 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.056 0.944 9 C 0.026 3.974 10 C -0.092 4.092 11 C -0.080 4.080 12 C -0.075 4.075 13 C -0.050 4.050 14 C -0.100 4.100 15 C 0.023 3.977 16 C 0.531 3.469 17 F -0.173 7.173 18 F -0.165 7.165 19 F -0.166 7.166 20 N -0.464 5.464 21 C 0.159 3.841 22 Cl -0.021 7.021 23 H 0.263 0.737 24 H -0.007 1.007 25 H 0.002 0.998 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.195 0.805 31 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.383 -19.830 3.588 21.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.782 3.218 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.129 4.129 11 C -0.117 4.117 12 C -0.078 4.078 13 C -0.076 4.076 14 C -0.120 4.120 15 C -0.116 4.116 16 C 0.476 3.524 17 F -0.155 7.155 18 F -0.146 7.146 19 F -0.147 7.147 20 N -0.175 5.175 21 C -0.007 4.007 22 Cl 0.008 6.992 23 H 0.072 0.928 24 H 0.012 0.988 25 H 0.020 0.980 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.212 0.788 31 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 7.637 -19.932 2.656 21.510 hybrid contribution 0.001 1.179 0.043 1.179 sum 7.638 -18.754 2.699 20.428 Atomic orbital electron populations 1.70073 1.07569 1.27631 1.51840 1.25874 0.95699 1.02977 0.94935 0.85571 0.78831 0.79074 0.78341 1.20165 1.20692 1.18848 1.21701 0.93419 0.92615 1.50220 0.92609 1.18989 0.94307 0.92439 0.95338 1.21413 0.98103 0.92551 1.00857 1.20764 0.95825 0.90296 1.04853 1.21092 0.97133 0.97319 0.92291 1.22048 0.94705 0.92028 0.98783 1.22283 0.94439 0.97019 0.98222 1.20970 1.00945 0.98262 0.91410 1.17690 0.79498 0.81222 0.74002 1.93220 1.87321 1.96380 1.38535 1.93247 1.59888 1.94502 1.67005 1.93245 1.81193 1.47751 1.92511 1.66326 1.13373 1.06455 1.31318 1.21551 0.96195 0.93693 0.89221 1.98437 1.92310 1.74894 1.33585 0.92834 0.98838 0.98008 0.92519 0.93466 0.90415 0.88097 0.78789 0.79097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.30 13.29 21.45 0.28 -55.01 16 2 C 0.00 0.17 5.46 84.65 0.46 0.63 16 3 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.54 -29.98 9.11 25.60 0.23 -29.74 16 8 H 0.06 3.00 7.74 -2.91 -0.02 2.97 16 9 C 0.03 1.30 4.97 29.85 0.15 1.45 16 10 C -0.09 -3.43 5.09 30.59 0.16 -3.27 16 11 C -0.08 -2.27 4.82 29.85 0.14 -2.12 16 12 C -0.08 -1.86 5.16 -19.75 -0.10 -1.96 16 13 C -0.05 -0.86 9.82 22.46 0.22 -0.64 16 14 C -0.10 -1.58 9.61 22.36 0.21 -1.37 16 15 C 0.02 0.52 6.26 42.54 0.27 0.79 16 16 C 0.53 10.97 3.31 71.24 0.24 11.21 16 17 F -0.17 -4.28 16.85 44.97 0.76 -3.52 16 18 F -0.17 -3.14 17.16 44.97 0.77 -2.37 16 19 F -0.17 -3.12 17.28 44.97 0.78 -2.35 16 20 N -0.46 -13.00 9.72 -174.85 -1.70 -14.70 16 21 C 0.16 4.48 7.27 84.70 0.62 5.10 16 22 Cl -0.02 -0.63 26.80 -2.72 -0.07 -0.70 16 23 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 24 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 25 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.05 1.83 7.27 -2.39 -0.02 1.81 16 28 H 0.08 2.32 7.37 -2.39 -0.02 2.30 16 29 H 0.10 2.47 8.03 -2.39 -0.02 2.45 16 30 H 0.20 1.95 8.06 -2.91 -0.02 1.92 16 31 H 0.19 1.50 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -65.21 302.11 6.61 -58.60 By element: Atomic # 1 Polarization: -6.87 SS G_CDS: 1.17 Total: -5.70 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 2.60 Total: -19.92 kcal Atomic # 7 Polarization: -68.30 SS G_CDS: -1.41 Total: -69.71 kcal Atomic # 9 Polarization: -10.54 SS G_CDS: 2.31 Total: -8.24 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.07 Total: -0.70 kcal Total: -65.21 6.61 -58.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066054.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.370 kcal (2) G-P(sol) polarization free energy of solvation -65.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds