Wall clock time and date at job start Tue Mar 31 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48507 * 109.46833 * 269.99940 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.99514 * 3 2 1 6 6 H 1.48492 * 109.47236 * 149.99615 * 3 2 1 7 7 C 1.37876 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00034 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00212 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47126 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46816 * 180.02562 * 10 9 7 12 12 C 1.35353 * 126.75076 * 124.99944 * 11 10 9 13 13 N 1.35309 * 106.17498 * 179.97438 * 12 11 10 14 14 C 1.46499 * 125.87027 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47215 * 124.97307 * 14 13 12 16 16 S 1.81397 * 109.47345 * 180.02562 * 15 14 13 17 17 O 1.42100 * 110.54212 * 291.62992 * 16 15 14 18 18 O 1.42100 * 110.54022 * 68.37712 * 16 15 14 19 19 Cl 2.01998 * 104.45156 * 180.02562 * 16 15 14 20 20 N 1.28714 * 108.26535 * 359.97438 * 13 12 11 21 21 N 1.28637 * 110.18046 * 0.02562 * 20 13 12 22 22 H 0.96997 * 120.00214 * 0.02562 * 1 2 3 23 23 H 1.09009 * 109.46858 * 59.99942 * 9 7 2 24 24 H 1.09003 * 109.47046 * 300.00339 * 9 7 2 25 25 H 1.08997 * 109.47274 * 60.00636 * 10 9 7 26 26 H 1.09004 * 109.46966 * 299.99799 * 10 9 7 27 27 H 1.08002 * 126.91189 * 359.97438 * 12 11 10 28 28 H 1.08997 * 109.47592 * 244.97299 * 14 13 12 29 29 H 1.09007 * 109.46901 * 4.97623 * 14 13 12 30 30 H 1.09001 * 109.47531 * 300.00255 * 15 14 13 31 31 H 1.09007 * 109.46928 * 60.00332 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4918 -4.9672 0.0012 12 6 1.6266 -5.9797 -0.8869 13 7 0.7570 -6.9406 -0.4978 14 6 0.5493 -8.2301 -1.1613 15 6 0.7443 -9.3614 -0.1498 16 16 0.4878 -10.9581 -0.9716 17 8 -0.8764 -11.1181 -1.3356 18 8 1.5295 -11.2119 -1.9041 19 17 0.7779 -12.3271 0.4852 20 7 0.1435 -6.5270 0.5554 21 7 0.5589 -5.3533 0.8788 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5572 -0.8898 24 1 0.6240 -2.5568 0.8903 25 1 2.8713 -3.6040 0.8923 26 1 2.8727 -3.6047 -0.8878 27 1 2.2940 -6.0138 -1.7353 28 1 -0.4628 -8.2729 -1.5636 29 1 1.2681 -8.3408 -1.9733 30 1 1.7564 -9.3187 0.2525 31 1 0.0255 -9.2507 0.6621 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254060696.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:14 Heat of formation + Delta-G solvation = 19.344758 kcal Electronic energy + Delta-G solvation = -18180.777076 eV Core-core repulsion = 14846.261977 eV Total energy + Delta-G solvation = -3334.515099 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.039 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.13298 -38.50023 -37.40251 -36.97502 -36.19121 -34.06015 -32.11642 -31.54228 -29.33440 -25.78469 -25.34032 -22.07956 -21.92759 -20.88306 -20.08552 -19.10179 -17.82520 -17.44009 -17.04363 -16.29924 -16.25566 -15.28039 -14.74115 -14.44126 -13.97204 -13.49802 -13.43829 -13.33361 -13.04361 -12.84440 -12.68778 -12.63073 -12.59529 -12.28857 -11.99000 -11.65248 -11.11141 -10.97942 -10.73569 -10.59170 -10.17141 -9.85954 -9.58582 -9.12224 -8.71032 -8.33192 -5.98221 -4.01680 -2.04787 0.58099 1.59310 1.94581 2.27704 2.72948 2.86367 3.20900 3.32511 3.39118 3.42093 3.58934 4.08145 4.28651 4.46333 4.56456 4.73119 5.19183 5.37469 5.39048 5.63927 6.33838 6.43109 6.53131 6.59513 6.99507 7.69350 7.84456 8.02833 8.39921 8.69579 9.05699 9.62143 11.12974 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.056753 B = 0.002461 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.248139 B =11376.725775 C =11409.248804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.035 4.035 11 C 0.016 3.984 12 C -0.065 4.065 13 N -0.304 5.304 14 C 0.136 3.864 15 C -0.603 4.603 16 S 2.387 3.613 17 O -0.852 6.852 18 O -0.855 6.855 19 Cl -0.467 7.467 20 N -0.096 5.096 21 N -0.246 5.246 22 H 0.261 0.739 23 H 0.014 0.986 24 H 0.027 0.973 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.191 0.809 28 H 0.118 0.882 29 H 0.124 0.876 30 H 0.161 0.839 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.947 -24.087 -3.773 24.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.008 4.008 10 C -0.075 4.075 11 C -0.120 4.120 12 C -0.213 4.213 13 N -0.099 5.099 14 C 0.011 3.989 15 C -0.735 4.735 16 S 2.480 3.520 17 O -0.850 6.850 18 O -0.854 6.854 19 Cl -0.466 7.466 20 N -0.075 5.075 21 N -0.114 5.114 22 H 0.070 0.930 23 H 0.032 0.968 24 H 0.045 0.955 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.208 0.792 28 H 0.136 0.864 29 H 0.142 0.858 30 H 0.179 0.821 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.625 -25.006 -3.051 25.244 hybrid contribution 1.237 1.499 -0.627 2.042 sum 2.862 -23.507 -3.678 23.965 Atomic orbital electron populations 1.69979 1.06080 1.26605 1.50508 1.25022 0.94821 0.99250 0.95315 0.86593 0.79847 0.83512 0.78021 1.20725 1.21246 1.19840 1.21220 0.93006 0.90934 1.50997 0.92520 1.19043 0.93671 0.90157 0.97974 1.20264 0.97669 0.87859 1.01682 1.22728 0.97943 0.98570 0.92800 1.23480 1.01368 0.90831 1.05610 1.46917 1.28065 1.13737 1.21201 1.21487 1.06552 0.78012 0.92812 1.30705 1.15748 1.13920 1.13137 1.12244 0.78189 0.81607 0.79957 1.93826 1.31098 1.83518 1.76565 1.93817 1.56880 1.82328 1.52329 1.99054 1.97144 1.74577 1.75873 1.78265 1.18992 1.08969 1.01229 1.75153 1.10621 1.02532 1.23075 0.92977 0.96769 0.95462 0.91038 0.91277 0.79159 0.86434 0.85771 0.82071 0.81219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.75 4.95 -27.88 -0.14 0.61 16 10 C -0.04 -0.70 5.73 -27.88 -0.16 -0.86 16 11 C 0.02 0.29 6.50 -82.77 -0.54 -0.25 16 12 C -0.06 -0.83 11.49 -17.05 -0.20 -1.03 16 13 N -0.30 -3.57 3.44 -61.26 -0.21 -3.78 16 14 C 0.14 0.80 6.46 -4.04 -0.03 0.77 16 15 C -0.60 -2.43 6.22 37.16 0.23 -2.20 16 16 S 2.39 11.98 5.78 -107.50 -0.62 11.36 16 17 O -0.85 -6.55 18.05 -57.54 -1.04 -7.59 16 18 O -0.86 -6.08 18.05 -57.54 -1.04 -7.12 16 19 Cl -0.47 -3.30 29.46 -51.86 -1.53 -4.83 16 20 N -0.10 -1.53 12.91 60.35 0.78 -0.75 16 21 N -0.25 -4.81 12.40 33.29 0.41 -4.40 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.01 0.39 8.14 -51.92 -0.42 -0.04 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 26 H 0.07 1.21 8.12 -51.93 -0.42 0.78 16 27 H 0.19 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.12 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.12 0.30 8.07 -51.93 -0.42 -0.12 16 30 H 0.16 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.17 0.63 8.12 -51.92 -0.42 0.21 16 LS Contribution 309.30 15.07 4.66 4.66 Total: -1.00 -38.25 309.30 -7.45 -45.70 By element: Atomic # 1 Polarization: -3.75 SS G_CDS: -3.34 Total: -7.09 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -1.24 Total: -16.28 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 1.72 Total: -35.21 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -2.08 Total: -14.71 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 11.98 SS G_CDS: -0.62 Total: 11.36 kcal Atomic # 17 Polarization: -3.30 SS G_CDS: -1.53 Total: -4.83 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -38.25 -7.45 -45.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254060696.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.041 kcal (2) G-P(sol) polarization free energy of solvation -38.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds