Wall clock time and date at job start Tue Mar 31 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48507 * 109.46833 * 269.99940 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.99514 * 3 2 1 6 6 H 1.48492 * 109.47236 * 149.99615 * 3 2 1 7 7 C 1.37876 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00034 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00212 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47126 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46816 * 180.02562 * 10 9 7 12 12 C 1.35353 * 126.75076 * 124.99944 * 11 10 9 13 13 N 1.35309 * 106.17498 * 179.97438 * 12 11 10 14 14 C 1.46499 * 125.87027 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47215 * 124.97307 * 14 13 12 16 16 S 1.81397 * 109.47345 * 180.02562 * 15 14 13 17 17 O 1.42100 * 110.54212 * 291.62992 * 16 15 14 18 18 O 1.42100 * 110.54022 * 68.37712 * 16 15 14 19 19 Cl 2.01998 * 104.45156 * 180.02562 * 16 15 14 20 20 N 1.28714 * 108.26535 * 359.97438 * 13 12 11 21 21 N 1.28637 * 110.18046 * 0.02562 * 20 13 12 22 22 H 0.96997 * 120.00214 * 0.02562 * 1 2 3 23 23 H 1.09009 * 109.46858 * 59.99942 * 9 7 2 24 24 H 1.09003 * 109.47046 * 300.00339 * 9 7 2 25 25 H 1.08997 * 109.47274 * 60.00636 * 10 9 7 26 26 H 1.09004 * 109.46966 * 299.99799 * 10 9 7 27 27 H 1.08002 * 126.91189 * 359.97438 * 12 11 10 28 28 H 1.08997 * 109.47592 * 244.97299 * 14 13 12 29 29 H 1.09007 * 109.46901 * 4.97623 * 14 13 12 30 30 H 1.09001 * 109.47531 * 300.00255 * 15 14 13 31 31 H 1.09007 * 109.46928 * 60.00332 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4918 -4.9672 0.0012 12 6 1.6266 -5.9797 -0.8869 13 7 0.7570 -6.9406 -0.4978 14 6 0.5493 -8.2301 -1.1613 15 6 0.7443 -9.3614 -0.1498 16 16 0.4878 -10.9581 -0.9716 17 8 -0.8764 -11.1181 -1.3356 18 8 1.5295 -11.2119 -1.9041 19 17 0.7779 -12.3271 0.4852 20 7 0.1435 -6.5270 0.5554 21 7 0.5589 -5.3533 0.8788 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5572 -0.8898 24 1 0.6240 -2.5568 0.8903 25 1 2.8713 -3.6040 0.8923 26 1 2.8727 -3.6047 -0.8878 27 1 2.2940 -6.0138 -1.7353 28 1 -0.4628 -8.2729 -1.5636 29 1 1.2681 -8.3408 -1.9733 30 1 1.7564 -9.3187 0.2525 31 1 0.0255 -9.2507 0.6621 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254060696.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:13 Heat of formation + Delta-G solvation = -10.913298 kcal Electronic energy + Delta-G solvation = -18182.089164 eV Core-core repulsion = 14846.261977 eV Total energy + Delta-G solvation = -3335.827186 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.039 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -44.23859 -39.01831 -37.92597 -37.49701 -37.06701 -35.77882 -33.85959 -32.38802 -30.90597 -27.19101 -26.45648 -23.77899 -22.91251 -21.68842 -21.07519 -19.69109 -18.53542 -18.39003 -17.96213 -17.69272 -17.12178 -16.46138 -15.93828 -15.72478 -15.03724 -14.76141 -14.34088 -14.05461 -14.01937 -13.86576 -13.48077 -13.40030 -13.17631 -13.14139 -13.00626 -12.86380 -12.67397 -12.54916 -12.40285 -12.10482 -11.82190 -11.35105 -11.21881 -11.04195 -10.52029 -9.99489 -8.15557 -6.27620 -2.49726 0.14718 0.58950 1.29144 1.43525 1.45678 1.56015 1.59069 1.73138 2.30658 2.44850 2.75161 3.17993 3.26235 3.49844 3.76555 3.91929 4.09754 4.27255 4.35757 4.57185 4.80434 4.99370 5.04084 5.32938 5.54943 5.61701 5.77614 5.89810 6.25631 6.91280 7.42001 7.53481 8.96747 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.056753 B = 0.002461 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.248139 B =11376.725775 C =11409.248804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.259 1.259 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.037 3.963 10 C -0.020 4.020 11 C -0.029 4.029 12 C -0.028 4.028 13 N -0.287 5.287 14 C 0.111 3.889 15 C -0.592 4.592 16 S 2.421 3.579 17 O -0.879 6.879 18 O -0.872 6.872 19 Cl -0.481 7.481 20 N -0.113 5.113 21 N -0.305 5.305 22 H 0.262 0.738 23 H -0.015 1.015 24 H -0.017 1.017 25 H 0.067 0.933 26 H 0.097 0.903 27 H 0.243 0.757 28 H 0.135 0.865 29 H 0.170 0.830 30 H 0.184 0.816 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.969 -24.918 -5.181 25.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.195 1.195 5 H -0.214 1.214 6 H -0.183 1.183 7 C -0.577 4.577 8 H 0.089 0.911 9 C -0.001 4.001 10 C -0.059 4.059 11 C -0.167 4.167 12 C -0.178 4.178 13 N -0.082 5.082 14 C -0.011 4.011 15 C -0.725 4.725 16 S 2.515 3.485 17 O -0.877 6.877 18 O -0.870 6.870 19 Cl -0.480 7.480 20 N -0.092 5.092 21 N -0.172 5.172 22 H 0.070 0.930 23 H 0.003 0.997 24 H 0.001 0.999 25 H 0.085 0.915 26 H 0.115 0.885 27 H 0.259 0.741 28 H 0.153 0.847 29 H 0.187 0.813 30 H 0.202 0.798 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.639 -25.897 -4.460 26.529 hybrid contribution 0.577 1.643 -0.240 1.758 sum 4.216 -24.254 -4.700 25.063 Atomic orbital electron populations 1.70146 1.08129 1.27657 1.51926 1.26060 0.95692 1.03671 0.94841 0.85398 0.78645 0.78136 0.78551 1.19502 1.21368 1.18320 1.21742 0.93905 0.91919 1.50148 0.91074 1.18844 0.94123 0.92723 0.94392 1.19918 0.96339 0.86852 1.02814 1.22564 0.99462 0.99532 0.95171 1.24040 1.00194 0.88912 1.04656 1.47292 1.26121 1.15038 1.19738 1.22229 1.09402 0.75615 0.93878 1.30621 1.17407 1.11818 1.12684 1.11339 0.76882 0.81246 0.79009 1.93791 1.32675 1.84067 1.77208 1.93789 1.57241 1.82779 1.53183 1.99053 1.97157 1.75439 1.76360 1.78134 1.19827 1.08132 1.03069 1.75077 1.12364 1.04411 1.25332 0.92965 0.99700 0.99857 0.91454 0.88496 0.74053 0.84723 0.81272 0.79843 0.80867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.54 13.29 21.45 0.28 -58.25 16 2 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 3 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.54 -30.32 9.11 25.60 0.23 -30.09 16 8 H 0.07 3.70 7.74 -2.91 -0.02 3.67 16 9 C 0.04 1.97 4.95 29.85 0.15 2.12 16 10 C -0.02 -0.79 5.73 29.85 0.17 -0.62 16 11 C -0.03 -1.03 6.50 41.60 0.27 -0.76 16 12 C -0.03 -0.63 11.49 83.49 0.96 0.33 16 13 N -0.29 -5.92 3.44 -347.73 -1.20 -7.12 16 14 C 0.11 0.86 6.46 86.38 0.56 1.42 16 15 C -0.59 -2.97 6.22 71.98 0.45 -2.52 16 16 S 2.42 19.04 5.78 -56.49 -0.33 18.71 16 17 O -0.88 -12.17 18.05 -127.65 -2.30 -14.48 16 18 O -0.87 -10.18 18.05 -127.65 -2.30 -12.48 16 19 Cl -0.48 -6.14 29.46 -2.72 -0.08 -6.22 16 20 N -0.11 -3.53 12.91 37.02 0.48 -3.05 16 21 N -0.30 -12.18 12.40 -48.59 -0.60 -12.78 16 22 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 23 H -0.02 -0.90 8.14 -2.38 -0.02 -0.92 16 24 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 25 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.10 3.19 8.12 -2.39 -0.02 3.17 16 27 H 0.24 2.66 8.06 -2.91 -0.02 2.64 16 28 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.17 -0.16 8.07 -2.38 -0.02 -0.18 16 30 H 0.18 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.17 0.90 8.12 -2.39 -0.02 0.88 16 Total: -1.00 -87.46 309.30 0.37 -87.08 By element: Atomic # 1 Polarization: -8.64 SS G_CDS: 1.15 Total: -7.49 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: 3.25 Total: -29.97 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -1.04 Total: -81.20 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -4.61 Total: -26.96 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 19.04 SS G_CDS: -0.33 Total: 18.71 kcal Atomic # 17 Polarization: -6.14 SS G_CDS: -0.08 Total: -6.22 kcal Total: -87.46 0.37 -87.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254060696.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.167 kcal (2) G-P(sol) polarization free energy of solvation -87.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds