Wall clock time and date at job start Tue Mar 31 2020 07:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99779 * 2 1 4 4 H 1.48500 * 109.47259 * 269.99931 * 3 2 1 5 5 H 1.48496 * 109.47546 * 30.00386 * 3 2 1 6 6 H 1.48502 * 109.46888 * 150.00039 * 3 2 1 7 7 C 1.37877 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99954 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99833 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47219 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47421 * 180.02562 * 10 9 7 12 12 C 1.35398 * 126.73349 * 125.28748 * 11 10 9 13 13 N 1.36079 * 106.05170 * 180.09383 * 12 11 10 14 14 C 1.40364 * 125.94371 * 179.91031 * 13 12 11 15 15 C 1.38715 * 120.07304 * 359.70608 * 14 13 12 16 16 C 1.38149 * 120.00025 * 179.72914 * 15 14 13 17 17 C 1.38412 * 120.15824 * 0.02562 * 16 15 14 18 18 Cl 1.73605 * 119.92705 * 179.97438 * 17 16 15 19 19 C 1.38307 * 120.14996 * 359.97438 * 17 16 15 20 20 C 1.38588 * 119.99806 * 0.02562 * 19 17 16 21 21 O 1.35928 * 120.08198 * 180.02562 * 20 19 17 22 22 N 1.28736 * 108.11735 * 359.63938 * 13 12 11 23 23 N 1.28603 * 110.23421 * 0.22871 * 22 13 12 24 24 H 0.96998 * 120.00035 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47083 * 60.00872 * 9 7 2 26 26 H 1.08995 * 109.47759 * 300.00285 * 9 7 2 27 27 H 1.08998 * 109.46942 * 59.99963 * 10 9 7 28 28 H 1.09005 * 109.46888 * 300.00526 * 10 9 7 29 29 H 1.07997 * 126.97957 * 359.95678 * 12 11 10 30 30 H 1.08000 * 119.99568 * 359.70391 * 15 14 13 31 31 H 1.08010 * 119.92392 * 179.97438 * 16 15 14 32 32 H 1.08000 * 120.00261 * 179.97438 * 19 17 16 33 33 H 0.96701 * 113.99821 * 270.00344 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4918 -4.9672 -0.0012 12 6 1.6301 -5.9817 -0.8872 13 7 0.7515 -6.9446 -0.4967 14 6 0.5501 -8.1816 -1.1289 15 6 1.2785 -8.5093 -2.2630 16 6 1.0832 -9.7294 -2.8807 17 6 0.1611 -10.6271 -2.3712 18 17 -0.0801 -12.1584 -3.1527 19 6 -0.5687 -10.3069 -1.2407 20 6 -0.3778 -9.0847 -0.6159 21 8 -1.0937 -8.7685 0.4954 22 7 0.1411 -6.5263 0.5568 23 7 0.5594 -5.3530 0.8767 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5572 0.8896 27 1 2.8719 -3.6044 0.8894 28 1 2.8720 -3.6043 -0.8905 29 1 2.3000 -6.0182 -1.7335 30 1 1.9981 -7.8104 -2.6632 31 1 1.6507 -9.9832 -3.7640 32 1 -1.2879 -11.0090 -0.8454 33 1 -1.9299 -8.3196 0.3101 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254165376.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:43 Heat of formation + Delta-G solvation = 75.702450 kcal Electronic energy + Delta-G solvation = -19749.707104 eV Core-core repulsion = 16418.025002 eV Total energy + Delta-G solvation = -3331.682102 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.21392 -40.25840 -37.53926 -36.67912 -34.96622 -33.71288 -32.07419 -30.86023 -29.81668 -29.18208 -25.44884 -24.31367 -23.53186 -21.81637 -21.52946 -20.26481 -18.84101 -18.01308 -16.62770 -16.44810 -16.29061 -16.04339 -15.44561 -14.88031 -14.43017 -14.23870 -13.74428 -13.49645 -13.39066 -13.01527 -12.62358 -12.24707 -12.08979 -11.70344 -11.48529 -11.17111 -11.01701 -10.89054 -10.74054 -10.64863 -10.48819 -9.91572 -9.56206 -9.51107 -9.10014 -8.90934 -8.51576 -8.30893 -5.96229 -3.99513 0.13643 0.53617 1.52224 1.89674 2.25113 2.89691 2.98679 3.34054 3.40527 3.43759 3.64914 4.01354 4.31271 4.45738 4.48664 4.68709 4.79927 5.10358 5.20282 5.27547 5.37692 5.39449 5.45411 5.53411 5.83580 5.88457 6.38548 6.47069 6.62575 6.78649 7.02039 7.27481 7.71630 7.87003 8.05089 8.42124 8.75740 9.07770 9.64107 11.15015 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.039547 B = 0.002694 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.844569 B =10391.112523 C =10749.323355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.035 4.035 11 C 0.023 3.977 12 C -0.073 4.073 13 N -0.256 5.256 14 C 0.117 3.883 15 C -0.096 4.096 16 C -0.097 4.097 17 C -0.022 4.022 18 Cl -0.057 7.057 19 C -0.120 4.120 20 C 0.137 3.863 21 O -0.467 6.467 22 N -0.068 5.068 23 N -0.247 5.247 24 H 0.260 0.740 25 H 0.014 0.986 26 H 0.028 0.972 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.190 0.810 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.574 -24.409 -8.219 25.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.008 4.008 10 C -0.075 4.075 11 C -0.112 4.112 12 C -0.219 4.219 13 N -0.045 5.045 14 C 0.023 3.977 15 C -0.117 4.117 16 C -0.117 4.117 17 C -0.050 4.050 18 Cl -0.028 7.028 19 C -0.140 4.140 20 C 0.089 3.911 21 O -0.278 6.278 22 N -0.046 5.046 23 N -0.115 5.115 24 H 0.070 0.930 25 H 0.032 0.968 26 H 0.046 0.954 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.207 0.793 30 H 0.168 0.832 31 H 0.167 0.833 32 H 0.170 0.830 33 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -0.192 -24.925 -6.865 25.853 hybrid contribution 0.757 1.176 -1.217 1.854 sum 0.564 -23.749 -8.082 25.092 Atomic orbital electron populations 1.69982 1.06077 1.26575 1.50557 1.25021 0.94824 0.99239 0.95334 0.86591 0.79859 0.83510 0.78005 1.20736 1.21250 1.19831 1.21219 0.93017 0.90910 1.50932 0.92500 1.19044 0.93667 0.90110 0.98003 1.20280 0.97687 0.87737 1.01767 1.22713 0.97651 0.98284 0.92542 1.23534 1.01835 0.90448 1.06043 1.44534 1.27470 1.12248 1.20210 1.18265 1.00800 0.83900 0.94735 1.20836 0.99682 0.97619 0.93599 1.20910 0.97769 0.92104 1.00884 1.20800 0.99312 0.89140 0.95718 1.98398 1.96097 1.28440 1.79828 1.21246 1.01299 0.97107 0.94341 1.17894 0.93943 0.91409 0.87867 1.84907 1.37187 1.79744 1.25973 1.78522 1.18331 1.07841 0.99908 1.75153 1.10710 1.02743 1.22911 0.92997 0.96762 0.95402 0.90902 0.91241 0.79305 0.83195 0.83305 0.83046 0.74197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.77 4.95 -27.88 -0.14 0.63 16 10 C -0.04 -0.73 5.73 -27.89 -0.16 -0.89 16 11 C 0.02 0.44 6.50 -82.77 -0.54 -0.10 16 12 C -0.07 -1.11 10.84 -16.68 -0.18 -1.29 16 13 N -0.26 -3.91 3.56 -10.36 -0.04 -3.94 16 14 C 0.12 1.36 6.69 -83.39 -0.56 0.80 16 15 C -0.10 -0.81 9.45 -39.44 -0.37 -1.18 16 16 C -0.10 -0.67 9.82 -39.55 -0.39 -1.06 16 17 C -0.02 -0.17 6.32 -39.49 -0.25 -0.42 16 18 Cl -0.06 -0.40 28.95 -51.86 -1.50 -1.90 16 19 C -0.12 -0.99 9.76 -39.43 -0.38 -1.38 16 20 C 0.14 1.46 6.71 -39.07 -0.26 1.20 16 21 O -0.47 -5.34 11.62 -19.51 -0.23 -5.56 16 22 N -0.07 -1.26 11.22 60.35 0.68 -0.58 16 23 N -0.25 -5.22 12.39 33.29 0.41 -4.81 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 28 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 29 H 0.19 2.00 7.11 -52.49 -0.37 1.63 16 30 H 0.15 0.96 6.77 -52.49 -0.36 0.61 16 31 H 0.15 0.67 8.06 -52.48 -0.42 0.25 16 32 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 33 H 0.40 3.22 9.06 45.56 0.41 3.63 16 LS Contribution 310.87 15.07 4.68 4.68 Total: -1.00 -34.55 310.87 -6.31 -40.86 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -2.39 Total: -1.67 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -3.64 Total: -17.18 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 1.79 Total: -35.86 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.23 Total: -5.56 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.50 Total: -1.90 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.55 -6.31 -40.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254165376.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.562 kcal (2) G-P(sol) polarization free energy of solvation -34.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds