Wall clock time and date at job start Tue Mar 31 2020 07:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99779 * 2 1 4 4 H 1.48500 * 109.47259 * 269.99931 * 3 2 1 5 5 H 1.48496 * 109.47546 * 30.00386 * 3 2 1 6 6 H 1.48502 * 109.46888 * 150.00039 * 3 2 1 7 7 C 1.37877 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99954 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99833 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47219 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47421 * 180.02562 * 10 9 7 12 12 C 1.35398 * 126.73349 * 125.28748 * 11 10 9 13 13 N 1.36079 * 106.05170 * 180.09383 * 12 11 10 14 14 C 1.40364 * 125.94371 * 179.91031 * 13 12 11 15 15 C 1.38715 * 120.07304 * 359.70608 * 14 13 12 16 16 C 1.38149 * 120.00025 * 179.72914 * 15 14 13 17 17 C 1.38412 * 120.15824 * 0.02562 * 16 15 14 18 18 Cl 1.73605 * 119.92705 * 179.97438 * 17 16 15 19 19 C 1.38307 * 120.14996 * 359.97438 * 17 16 15 20 20 C 1.38588 * 119.99806 * 0.02562 * 19 17 16 21 21 O 1.35928 * 120.08198 * 180.02562 * 20 19 17 22 22 N 1.28736 * 108.11735 * 359.63938 * 13 12 11 23 23 N 1.28603 * 110.23421 * 0.22871 * 22 13 12 24 24 H 0.96998 * 120.00035 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47083 * 60.00872 * 9 7 2 26 26 H 1.08995 * 109.47759 * 300.00285 * 9 7 2 27 27 H 1.08998 * 109.46942 * 59.99963 * 10 9 7 28 28 H 1.09005 * 109.46888 * 300.00526 * 10 9 7 29 29 H 1.07997 * 126.97957 * 359.95678 * 12 11 10 30 30 H 1.08000 * 119.99568 * 359.70391 * 15 14 13 31 31 H 1.08010 * 119.92392 * 179.97438 * 16 15 14 32 32 H 1.08000 * 120.00261 * 179.97438 * 19 17 16 33 33 H 0.96701 * 113.99821 * 270.00344 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4918 -4.9672 -0.0012 12 6 1.6301 -5.9817 -0.8872 13 7 0.7515 -6.9446 -0.4967 14 6 0.5501 -8.1816 -1.1289 15 6 1.2785 -8.5093 -2.2630 16 6 1.0832 -9.7294 -2.8807 17 6 0.1611 -10.6271 -2.3712 18 17 -0.0801 -12.1584 -3.1527 19 6 -0.5687 -10.3069 -1.2407 20 6 -0.3778 -9.0847 -0.6159 21 8 -1.0937 -8.7685 0.4954 22 7 0.1411 -6.5263 0.5568 23 7 0.5594 -5.3530 0.8767 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5572 0.8896 27 1 2.8719 -3.6044 0.8894 28 1 2.8720 -3.6043 -0.8905 29 1 2.3000 -6.0182 -1.7335 30 1 1.9981 -7.8104 -2.6632 31 1 1.6507 -9.9832 -3.7640 32 1 -1.2879 -11.0090 -0.8454 33 1 -1.9299 -8.3196 0.3101 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254165376.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:42 Heat of formation + Delta-G solvation = 51.723924 kcal Electronic energy + Delta-G solvation = -19750.746891 eV Core-core repulsion = 16418.025002 eV Total energy + Delta-G solvation = -3332.721889 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.46301 -41.02744 -38.23925 -37.40349 -36.40367 -35.28458 -33.84171 -31.64052 -31.14948 -30.36460 -27.29791 -25.31970 -24.55937 -23.38088 -22.61118 -21.61254 -19.72958 -19.00098 -18.46441 -17.64794 -17.09083 -17.06706 -16.47900 -16.36940 -15.75741 -15.17011 -15.04086 -14.76625 -14.36435 -14.19425 -13.99649 -13.42687 -13.27230 -13.05227 -12.82834 -12.68701 -12.45786 -12.19645 -12.06132 -11.91954 -11.81110 -11.52316 -11.40034 -11.20653 -10.52815 -10.18913 -10.13149 -9.53516 -8.15938 -6.28197 -0.68515 -0.10117 0.83516 0.89047 1.24379 1.43173 1.45701 1.49919 1.57024 2.23923 2.44628 2.93737 3.17489 3.19432 3.44966 3.74650 3.86903 3.96784 4.13322 4.14011 4.36431 4.56212 4.64051 4.75892 4.78490 4.91700 4.97790 5.09224 5.21759 5.29787 5.53592 5.71829 5.75754 5.88136 6.24291 6.55364 6.90055 7.41120 7.44462 8.96531 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.039547 B = 0.002694 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.844569 B =10391.112523 C =10749.323355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.970 3.030 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.259 1.259 7 C -0.539 4.539 8 H 0.072 0.928 9 C 0.038 3.962 10 C -0.020 4.020 11 C -0.016 4.016 12 C -0.043 4.043 13 N -0.243 5.243 14 C 0.073 3.927 15 C -0.082 4.082 16 C -0.088 4.088 17 C -0.016 4.016 18 Cl -0.046 7.046 19 C -0.120 4.120 20 C 0.126 3.874 21 O -0.488 6.488 22 N -0.090 5.090 23 N -0.303 5.303 24 H 0.262 0.738 25 H -0.015 1.015 26 H -0.016 1.016 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.241 0.759 30 H 0.177 0.823 31 H 0.182 0.818 32 H 0.165 0.835 33 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.744 -25.833 -10.609 28.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.794 3.206 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.183 1.183 7 C -0.577 4.577 8 H 0.090 0.910 9 C 0.000 4.000 10 C -0.059 4.059 11 C -0.153 4.153 12 C -0.190 4.190 13 N -0.031 5.031 14 C -0.019 4.019 15 C -0.103 4.103 16 C -0.107 4.107 17 C -0.043 4.043 18 Cl -0.016 7.016 19 C -0.139 4.139 20 C 0.078 3.922 21 O -0.300 6.300 22 N -0.067 5.067 23 N -0.170 5.170 24 H 0.071 0.929 25 H 0.004 0.996 26 H 0.002 0.998 27 H 0.088 0.912 28 H 0.118 0.882 29 H 0.258 0.742 30 H 0.194 0.806 31 H 0.199 0.801 32 H 0.183 0.817 33 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 1.965 -26.398 -9.252 28.041 hybrid contribution 0.019 1.364 -0.589 1.486 sum 1.985 -25.034 -9.841 26.972 Atomic orbital electron populations 1.70150 1.08155 1.27688 1.51856 1.26073 0.95710 1.03714 0.94781 0.85374 0.78616 0.78014 0.78586 1.19417 1.21325 1.18329 1.21718 0.93923 0.91787 1.50267 0.90990 1.18836 0.94063 0.92623 0.94468 1.19968 0.96393 0.86418 1.03073 1.22598 0.98956 0.99231 0.94488 1.24099 1.00839 0.88604 1.05436 1.44755 1.26131 1.13159 1.19082 1.18753 1.03404 0.83048 0.96712 1.21174 0.98889 0.98395 0.91827 1.21272 0.97141 0.91011 1.01294 1.20991 0.98667 0.89557 0.95134 1.98414 1.96010 1.27761 1.79460 1.21337 1.01714 0.96367 0.94507 1.18147 0.93963 0.92180 0.87882 1.84864 1.37984 1.80038 1.27134 1.78416 1.19399 1.07278 1.01623 1.75073 1.12522 1.04333 1.25049 0.92937 0.99639 0.99794 0.91174 0.88219 0.74242 0.80574 0.80098 0.81743 0.73164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.15 13.29 21.45 0.28 -58.86 16 2 C -0.01 -0.33 5.46 84.65 0.46 0.14 16 3 Si 0.97 44.53 29.54 68.60 2.03 46.55 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.54 -30.80 9.11 25.60 0.23 -30.56 16 8 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 9 C 0.04 2.07 4.95 29.85 0.15 2.22 16 10 C -0.02 -0.81 5.73 29.85 0.17 -0.64 16 11 C -0.02 -0.64 6.50 41.61 0.27 -0.37 16 12 C -0.04 -1.23 10.84 83.38 0.90 -0.33 16 13 N -0.24 -7.24 3.56 -186.70 -0.66 -7.91 16 14 C 0.07 1.58 6.69 38.14 0.26 1.83 16 15 C -0.08 -1.08 9.45 22.36 0.21 -0.87 16 16 C -0.09 -0.86 9.82 22.29 0.22 -0.64 16 17 C -0.02 -0.19 6.32 22.33 0.14 -0.05 16 18 Cl -0.05 -0.50 28.95 -2.72 -0.08 -0.58 16 19 C -0.12 -1.76 9.76 22.37 0.22 -1.54 16 20 C 0.13 2.59 6.71 22.60 0.15 2.74 16 21 O -0.49 -11.49 11.62 -92.74 -1.08 -12.56 16 22 N -0.09 -3.42 11.22 37.02 0.42 -3.01 16 23 N -0.30 -13.46 12.39 -48.59 -0.60 -14.06 16 24 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 25 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 26 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 27 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.10 3.46 8.12 -2.38 -0.02 3.44 16 29 H 0.24 3.95 7.11 -2.91 -0.02 3.93 16 30 H 0.18 1.33 6.77 -2.91 -0.02 1.31 16 31 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 32 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 33 H 0.41 7.16 9.06 -74.06 -0.67 6.49 16 Total: -1.00 -79.57 310.87 4.18 -75.39 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: 0.49 Total: 3.12 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: 3.39 Total: -28.08 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -0.57 Total: -83.84 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -1.08 Total: -12.56 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -0.08 Total: -0.58 kcal Total: -79.57 4.18 -75.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254165376.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.110 kcal (2) G-P(sol) polarization free energy of solvation -79.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds