Wall clock time and date at job start Tue Mar 31 2020 06:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00199 * 2 1 4 4 H 1.48499 * 109.47337 * 240.00429 * 3 2 1 5 5 H 1.48504 * 109.46755 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47288 * 119.99871 * 3 2 1 7 7 C 1.38808 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00523 * 180.02562 * 7 2 1 9 9 N 1.36947 * 119.99783 * 359.97438 * 7 2 1 10 10 S 1.65595 * 119.99862 * 180.02562 * 9 7 2 11 11 O 1.42105 * 106.40149 * 178.53999 * 10 9 7 12 12 O 1.42098 * 106.40317 * 311.45872 * 10 9 7 13 13 C 1.76204 * 107.21987 * 65.00234 * 10 9 7 14 14 C 1.38287 * 119.92557 * 269.72202 * 13 10 9 15 15 C 1.38120 * 120.05670 * 179.76504 * 14 13 10 16 16 C 1.38832 * 119.93697 * 0.53280 * 15 14 13 17 17 N 1.40194 * 120.06682 * 179.70137 * 16 15 14 18 18 C 1.35223 * 126.05255 * 359.73764 * 17 16 15 19 19 C 1.35320 * 107.71047 * 179.84239 * 18 17 16 20 20 C 1.39923 * 107.93086 * 0.41789 * 19 18 17 21 21 N 1.30870 * 108.24333 * 359.74229 * 20 19 18 22 22 C 1.38840 * 119.86611 * 359.72150 * 16 15 14 23 23 C 1.38108 * 119.93504 * 0.02562 * 22 16 15 24 24 H 0.97000 * 119.99847 * 0.02562 * 1 2 3 25 25 H 0.96997 * 120.00104 * 359.97438 * 9 7 2 26 26 H 1.07997 * 119.97155 * 0.02562 * 14 13 10 27 27 H 1.08010 * 120.03133 * 180.25748 * 15 14 13 28 28 H 1.08002 * 126.14431 * 359.95985 * 18 17 16 29 29 H 1.07997 * 126.03659 * 180.12994 * 19 18 17 30 30 H 1.07998 * 125.87714 * 179.76290 * 20 19 18 31 31 H 1.08002 * 120.02992 * 180.02562 * 22 16 15 32 32 H 1.07997 * 119.97074 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 16 2.1535 -3.8222 -0.0005 11 8 1.1740 -4.8511 0.0342 12 8 3.1357 -3.7184 -1.0221 13 6 3.0303 -3.9183 1.5249 14 6 4.3164 -3.4179 1.6141 15 6 5.0043 -3.4875 2.8097 16 6 4.4076 -4.0703 3.9195 17 7 5.1057 -4.1480 5.1328 18 6 6.3620 -3.7013 5.3581 19 6 6.6654 -3.9604 6.6511 20 6 5.5625 -4.5946 7.2336 21 7 4.6276 -4.7075 6.3247 22 6 3.1182 -4.5764 3.8253 23 6 2.4333 -4.4994 2.6285 24 1 -0.4850 0.8401 -0.0004 25 1 0.3555 -2.3881 0.0002 26 1 4.7817 -2.9686 0.7492 27 1 6.0073 -3.0928 2.8801 28 1 7.0067 -3.2219 4.6362 29 1 7.5963 -3.7241 7.1450 30 1 5.4943 -4.9325 8.2571 31 1 2.6513 -5.0300 4.6871 32 1 1.4304 -4.8933 2.5545 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259371202.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:39 Heat of formation + Delta-G solvation = 39.220527 kcal Electronic energy + Delta-G solvation = -20454.787183 eV Core-core repulsion = 17123.566812 eV Total energy + Delta-G solvation = -3331.220371 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.63317 -38.81821 -36.15082 -34.77874 -34.69148 -33.56538 -31.23516 -31.02574 -30.19013 -29.02249 -24.59782 -23.77434 -23.12647 -20.87074 -20.66744 -18.66498 -18.37838 -18.16468 -17.09691 -16.25669 -15.44709 -15.36878 -15.13011 -14.58064 -14.32099 -14.20127 -13.86158 -13.48170 -13.39150 -12.87894 -12.77127 -12.74135 -12.02664 -11.35722 -11.32629 -11.14090 -11.08350 -10.95811 -10.79512 -10.65286 -10.56615 -10.34044 -10.08884 -9.97820 -9.32759 -8.93287 -8.38074 -8.19564 -6.54479 -3.97174 0.61977 1.44385 1.49724 2.02189 2.23805 2.58776 3.14540 3.18107 3.20030 3.67308 4.02138 4.33877 4.42841 4.56731 4.74403 4.83459 4.91648 5.05682 5.12422 5.33884 5.46767 5.49575 5.63870 5.70826 5.84546 6.02741 6.09088 6.20654 6.43601 6.50976 6.75641 6.94254 7.10374 7.41082 7.45701 8.58489 8.71951 9.14787 10.61096 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.016723 B = 0.004960 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.931941 B = 5643.986037 C = 6603.819378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.033 3.967 3 Si 0.923 3.077 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.276 4.276 8 H 0.104 0.896 9 N -0.945 5.945 10 S 2.614 3.386 11 O -1.000 7.000 12 O -0.970 6.970 13 C -0.666 4.666 14 C 0.005 3.995 15 C -0.165 4.165 16 C 0.187 3.813 17 N -0.321 5.321 18 C 0.055 3.945 19 C -0.266 4.266 20 C 0.052 3.948 21 N -0.289 5.289 22 C -0.144 4.144 23 C -0.002 4.002 24 H 0.276 0.724 25 H 0.411 0.589 26 H 0.147 0.853 27 H 0.132 0.868 28 H 0.179 0.821 29 H 0.153 0.847 30 H 0.189 0.811 31 H 0.139 0.861 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.365 -4.072 10.233 15.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.176 4.176 3 Si 0.749 3.251 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.416 4.416 8 H 0.121 0.879 9 N -0.697 5.697 10 S 2.704 3.296 11 O -0.989 6.989 12 O -0.960 6.960 13 C -0.746 4.746 14 C -0.015 4.015 15 C -0.186 4.186 16 C 0.094 3.906 17 N -0.096 5.096 18 C -0.087 4.087 19 C -0.295 4.295 20 C -0.135 4.135 21 N -0.108 5.108 22 C -0.165 4.165 23 C -0.022 4.022 24 H 0.086 0.914 25 H 0.247 0.753 26 H 0.165 0.835 27 H 0.149 0.851 28 H 0.196 0.804 29 H 0.171 0.829 30 H 0.206 0.794 31 H 0.156 0.844 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.268 -5.158 9.333 14.128 hybrid contribution 1.145 1.463 1.235 2.230 sum 10.413 -3.695 10.568 15.289 Atomic orbital electron populations 1.69677 1.06022 1.28579 1.47287 1.25257 0.95662 0.99528 0.97117 0.86050 0.79118 0.80754 0.79196 1.19407 1.20640 1.19790 1.19280 0.92177 0.83009 1.47146 0.87852 1.51788 1.17104 1.19265 1.81561 1.06427 0.73181 0.73681 0.76352 1.93423 1.59764 1.57780 1.87935 1.93473 1.61270 1.86955 1.54332 1.32246 1.07799 1.09377 1.25144 1.20769 0.92003 0.91992 0.96697 1.20861 1.01254 1.04341 0.92174 1.17728 0.92359 0.98505 0.81980 1.46018 1.11074 1.44399 1.08104 1.22708 0.87231 1.00159 0.98641 1.21597 1.02248 1.11395 0.94242 1.24082 0.91515 0.98423 0.99506 1.77469 1.23160 1.19575 0.90595 1.20932 0.93090 1.03053 0.99383 1.20803 0.99160 0.91963 0.90248 0.91396 0.75275 0.83494 0.85062 0.80419 0.82891 0.79416 0.84362 0.83842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.60 13.06 55.49 0.72 -21.87 16 2 C 0.03 0.80 5.50 -17.43 -0.10 0.70 16 3 Si 0.92 19.05 29.55 -169.99 -5.02 14.02 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.28 -6.70 9.63 -15.06 -0.15 -6.84 16 8 H 0.10 2.34 7.82 -52.48 -0.41 1.93 16 9 N -0.95 -21.98 5.75 31.50 0.18 -21.80 16 10 S 2.61 55.79 5.70 -107.50 -0.61 55.18 16 11 O -1.00 -22.78 17.28 -57.17 -0.99 -23.77 16 12 O -0.97 -22.57 16.97 -57.17 -0.97 -23.54 16 13 C -0.67 -12.51 5.89 -39.55 -0.23 -12.74 16 14 C 0.01 0.09 9.51 -39.61 -0.38 -0.29 16 15 C -0.16 -2.45 9.46 -39.41 -0.37 -2.82 16 16 C 0.19 2.95 6.69 -83.59 -0.56 2.39 16 17 N -0.32 -4.64 3.80 -10.70 -0.04 -4.69 16 18 C 0.06 0.63 10.80 -17.10 -0.18 0.44 16 19 C -0.27 -2.63 10.81 -39.99 -0.43 -3.07 16 20 C 0.05 0.56 12.03 -17.33 -0.21 0.36 16 21 N -0.29 -4.18 11.87 30.64 0.36 -3.81 16 22 C -0.14 -2.36 9.66 -39.41 -0.38 -2.75 16 23 C 0.00 -0.04 9.51 -39.61 -0.38 -0.41 16 24 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 25 H 0.41 9.75 8.02 -34.47 -0.28 9.47 16 26 H 0.15 2.32 7.60 -52.49 -0.40 1.92 16 27 H 0.13 1.47 6.74 -52.48 -0.35 1.12 16 28 H 0.18 1.43 7.04 -52.49 -0.37 1.06 16 29 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 30 H 0.19 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.14 2.11 7.70 -52.49 -0.40 1.70 16 32 H 0.14 2.34 7.61 -52.49 -0.40 1.94 16 LS Contribution 301.75 15.07 4.55 4.55 Total: -1.00 -31.47 301.75 -7.78 -39.25 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -2.59 Total: 11.50 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -3.37 Total: -25.03 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 1.23 Total: -52.17 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -1.96 Total: -47.31 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.02 kcal Atomic # 16 Polarization: 55.79 SS G_CDS: -0.61 Total: 55.18 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.47 -7.78 -39.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259371202.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.472 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds