Wall clock time and date at job start Tue Mar 31 2020 06:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00199 * 2 1 4 4 H 1.48499 * 109.47337 * 240.00429 * 3 2 1 5 5 H 1.48504 * 109.46755 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47288 * 119.99871 * 3 2 1 7 7 C 1.38808 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00523 * 180.02562 * 7 2 1 9 9 N 1.36947 * 119.99783 * 359.97438 * 7 2 1 10 10 S 1.65595 * 119.99862 * 180.02562 * 9 7 2 11 11 O 1.42105 * 106.40149 * 178.53999 * 10 9 7 12 12 O 1.42098 * 106.40317 * 311.45872 * 10 9 7 13 13 C 1.76204 * 107.21987 * 65.00234 * 10 9 7 14 14 C 1.38287 * 119.92557 * 269.72202 * 13 10 9 15 15 C 1.38120 * 120.05670 * 179.76504 * 14 13 10 16 16 C 1.38832 * 119.93697 * 0.53280 * 15 14 13 17 17 N 1.40194 * 120.06682 * 179.70137 * 16 15 14 18 18 C 1.35223 * 126.05255 * 359.73764 * 17 16 15 19 19 C 1.35320 * 107.71047 * 179.84239 * 18 17 16 20 20 C 1.39923 * 107.93086 * 0.41789 * 19 18 17 21 21 N 1.30870 * 108.24333 * 359.74229 * 20 19 18 22 22 C 1.38840 * 119.86611 * 359.72150 * 16 15 14 23 23 C 1.38108 * 119.93504 * 0.02562 * 22 16 15 24 24 H 0.97000 * 119.99847 * 0.02562 * 1 2 3 25 25 H 0.96997 * 120.00104 * 359.97438 * 9 7 2 26 26 H 1.07997 * 119.97155 * 0.02562 * 14 13 10 27 27 H 1.08010 * 120.03133 * 180.25748 * 15 14 13 28 28 H 1.08002 * 126.14431 * 359.95985 * 18 17 16 29 29 H 1.07997 * 126.03659 * 180.12994 * 19 18 17 30 30 H 1.07998 * 125.87714 * 179.76290 * 20 19 18 31 31 H 1.08002 * 120.02992 * 180.02562 * 22 16 15 32 32 H 1.07997 * 119.97074 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 16 2.1535 -3.8222 -0.0005 11 8 1.1740 -4.8511 0.0342 12 8 3.1357 -3.7184 -1.0221 13 6 3.0303 -3.9183 1.5249 14 6 4.3164 -3.4179 1.6141 15 6 5.0043 -3.4875 2.8097 16 6 4.4076 -4.0703 3.9195 17 7 5.1057 -4.1480 5.1328 18 6 6.3620 -3.7013 5.3581 19 6 6.6654 -3.9604 6.6511 20 6 5.5625 -4.5946 7.2336 21 7 4.6276 -4.7075 6.3247 22 6 3.1182 -4.5764 3.8253 23 6 2.4333 -4.4994 2.6285 24 1 -0.4850 0.8401 -0.0004 25 1 0.3555 -2.3881 0.0002 26 1 4.7817 -2.9686 0.7492 27 1 6.0073 -3.0928 2.8801 28 1 7.0067 -3.2219 4.6362 29 1 7.5963 -3.7241 7.1450 30 1 5.4943 -4.9325 8.2571 31 1 2.6513 -5.0300 4.6871 32 1 1.4304 -4.8933 2.5545 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259371202.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:37 Heat of formation + Delta-G solvation = 16.985713 kcal Electronic energy + Delta-G solvation = -20455.751357 eV Core-core repulsion = 17123.566812 eV Total energy + Delta-G solvation = -3332.184545 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.56394 -40.07234 -38.05605 -36.69295 -36.43327 -34.70060 -32.80120 -32.44403 -31.17012 -30.18034 -26.40283 -24.94315 -24.33984 -21.96492 -21.61198 -20.32942 -19.99380 -19.45809 -18.69021 -17.99172 -16.82031 -16.36932 -16.34607 -16.19308 -15.88840 -15.39555 -15.28363 -14.72224 -14.65803 -14.06973 -14.03486 -13.76644 -13.66830 -13.08103 -12.99858 -12.97655 -12.82242 -12.45848 -12.34164 -12.14037 -11.83394 -11.80144 -11.61672 -11.59172 -10.28368 -10.22043 -10.14666 -9.32334 -8.28548 -5.85800 -0.63208 -0.21506 0.15660 0.97780 1.25401 1.49854 1.53734 1.59597 1.81366 2.26442 2.43026 2.71523 2.98439 3.24932 3.33209 3.56667 3.65662 3.89663 3.96510 4.17801 4.24818 4.39392 4.56420 4.68924 4.78362 4.82357 5.00074 5.03441 5.08605 5.13330 5.48751 5.64441 5.66241 6.04520 6.55845 6.76890 6.99918 7.35084 8.89824 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.016723 B = 0.004960 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.931941 B = 5643.986037 C = 6603.819378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.019 4.019 3 Si 0.980 3.020 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.312 4.312 8 H 0.112 0.888 9 N -0.975 5.975 10 S 2.677 3.323 11 O -1.011 7.011 12 O -0.990 6.990 13 C -0.686 4.686 14 C 0.001 3.999 15 C -0.158 4.158 16 C 0.199 3.801 17 N -0.344 5.344 18 C 0.044 3.956 19 C -0.257 4.257 20 C 0.059 3.941 21 N -0.337 5.337 22 C -0.155 4.155 23 C -0.007 4.007 24 H 0.271 0.729 25 H 0.406 0.594 26 H 0.158 0.842 27 H 0.174 0.826 28 H 0.210 0.790 29 H 0.188 0.812 30 H 0.223 0.777 31 H 0.146 0.854 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.840 -4.678 12.529 19.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.220 4.220 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.446 4.446 8 H 0.130 0.870 9 N -0.728 5.728 10 S 2.769 3.231 11 O -1.001 7.001 12 O -0.981 6.981 13 C -0.773 4.773 14 C -0.019 4.019 15 C -0.179 4.179 16 C 0.105 3.895 17 N -0.120 5.120 18 C -0.096 4.096 19 C -0.284 4.284 20 C -0.128 4.128 21 N -0.155 5.155 22 C -0.175 4.175 23 C -0.027 4.027 24 H 0.080 0.920 25 H 0.241 0.759 26 H 0.175 0.825 27 H 0.191 0.809 28 H 0.227 0.773 29 H 0.205 0.795 30 H 0.239 0.761 31 H 0.163 0.837 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 12.740 -5.655 11.588 18.126 hybrid contribution 0.364 1.212 0.813 1.504 sum 13.103 -4.444 12.401 18.580 Atomic orbital electron populations 1.69791 1.07283 1.28580 1.51677 1.25978 0.96343 1.02306 0.97355 0.85177 0.77862 0.77124 0.79449 1.18965 1.21131 1.18760 1.19476 0.92549 0.83468 1.49072 0.87006 1.51311 1.16683 1.19182 1.85658 1.02649 0.72653 0.72157 0.75639 1.93435 1.60721 1.57540 1.88373 1.93465 1.61952 1.87044 1.55622 1.31341 1.09194 1.13800 1.22992 1.20996 0.91273 0.91383 0.98245 1.21167 1.02745 1.03351 0.90626 1.17927 0.92020 0.96468 0.83088 1.46082 1.12187 1.46053 1.07690 1.23445 0.86331 0.99750 1.00118 1.22101 1.02983 1.09637 0.93712 1.24835 0.90961 0.96654 1.00358 1.77466 1.25148 1.21511 0.91399 1.21002 0.93853 1.03672 0.99006 1.20895 0.99534 0.91848 0.90444 0.92020 0.75919 0.82480 0.80861 0.77339 0.79467 0.76099 0.83670 0.83417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.85 13.06 21.65 0.28 -50.56 16 2 C -0.02 -0.95 5.50 84.86 0.47 -0.48 16 3 Si 0.98 40.07 29.55 68.60 2.03 42.09 16 4 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 5 H -0.29 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.31 -15.59 9.63 84.03 0.81 -14.78 16 8 H 0.11 5.14 7.82 -2.91 -0.02 5.12 16 9 N -0.98 -46.93 5.75 -54.26 -0.31 -47.24 16 10 S 2.68 114.57 5.70 -56.49 -0.32 114.24 16 11 O -1.01 -46.06 17.28 -128.00 -2.21 -48.28 16 12 O -0.99 -45.74 16.97 -128.00 -2.17 -47.91 16 13 C -0.69 -25.18 5.89 22.29 0.13 -25.05 16 14 C 0.00 0.03 9.51 22.25 0.21 0.24 16 15 C -0.16 -4.14 9.46 22.38 0.21 -3.93 16 16 C 0.20 5.76 6.69 38.09 0.25 6.02 16 17 N -0.34 -8.88 3.80 -187.76 -0.71 -9.59 16 18 C 0.04 0.79 10.80 83.50 0.90 1.69 16 19 C -0.26 -3.82 10.81 22.00 0.24 -3.59 16 20 C 0.06 1.06 12.03 85.24 1.03 2.08 16 21 N -0.34 -8.84 11.87 -56.97 -0.68 -9.52 16 22 C -0.15 -4.86 9.66 22.38 0.22 -4.65 16 23 C -0.01 -0.25 9.51 22.25 0.21 -0.04 16 24 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 25 H 0.41 20.32 8.02 -96.75 -0.78 19.55 16 26 H 0.16 4.62 7.60 -2.91 -0.02 4.60 16 27 H 0.17 2.99 6.74 -2.91 -0.02 2.97 16 28 H 0.21 2.19 7.04 -2.91 -0.02 2.17 16 29 H 0.19 1.44 8.06 -2.91 -0.02 1.41 16 30 H 0.22 2.13 8.06 -2.91 -0.02 2.11 16 31 H 0.15 4.30 7.70 -2.91 -0.02 4.28 16 32 H 0.15 4.80 7.61 -2.91 -0.02 4.78 16 Total: -1.00 -70.09 301.75 0.98 -69.11 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: 0.40 Total: 30.13 kcal Atomic # 6 Polarization: -47.16 SS G_CDS: 4.68 Total: -42.48 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -1.42 Total: -116.91 kcal Atomic # 8 Polarization: -91.80 SS G_CDS: -4.38 Total: -96.19 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.09 kcal Atomic # 16 Polarization: 114.57 SS G_CDS: -0.32 Total: 114.24 kcal Total: -70.09 0.98 -69.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259371202.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.095 kcal (2) G-P(sol) polarization free energy of solvation -70.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds