Wall clock time and date at job start Tue Mar 31 2020 06:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30910 * 123.03415 * 2 1 4 4 C 1.29390 * 117.46802 * 180.02562 * 3 2 1 5 5 S 1.70924 * 110.58598 * 359.74515 * 4 3 2 6 6 C 1.36758 * 123.03422 * 180.02562 * 2 1 3 7 7 C 1.46502 * 126.17657 * 359.95362 * 6 2 1 8 8 O 1.21612 * 120.00358 * 0.02562 * 7 6 2 9 9 O 1.34877 * 119.99596 * 179.97438 * 7 6 2 10 10 C 1.45202 * 116.99670 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.47201 * 30.00582 * 10 9 7 12 12 C 1.50702 * 109.46885 * 150.00294 * 10 9 7 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 10 9 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 10 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 10 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 10 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 C 1.50700 * 109.47358 * 270.00397 * 10 9 7 21 21 C 1.34511 * 125.79031 * 144.71900 * 20 10 9 22 22 C 1.41379 * 106.84521 * 179.89176 * 21 20 10 23 23 C 1.34520 * 106.83536 * 0.36719 * 22 21 20 24 24 O 1.34296 * 108.42315 * 359.77591 * 23 22 21 25 25 H 1.08994 * 109.47186 * 269.97540 * 1 2 3 26 26 H 1.09003 * 109.47227 * 29.98203 * 1 2 3 27 27 H 1.09001 * 109.46963 * 149.97219 * 1 2 3 28 28 H 1.08004 * 124.70698 * 180.02562 * 4 3 2 29 29 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 30 30 H 1.08003 * 126.57938 * 0.02562 * 21 20 10 31 31 H 1.07992 * 126.58428 * 180.16419 * 22 21 20 32 32 H 1.07999 * 125.78572 * 179.75417 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2206 1.0975 0.0000 4 6 3.5085 0.9720 -0.0005 5 16 3.9514 -0.6789 0.0060 6 6 2.2525 -1.1465 -0.0005 7 6 1.7325 -2.5161 -0.0002 8 8 0.5321 -2.7109 0.0002 9 8 2.5853 -3.5611 -0.0013 10 6 1.9996 -4.8898 -0.0014 11 1 1.0383 -4.8631 -0.5146 12 6 2.9224 -5.8454 -0.7129 13 1 3.8560 -5.4899 -1.1235 14 6 2.5779 -7.1750 -0.8342 15 7 1.4413 -7.6080 -0.3339 16 14 3.7254 -8.3610 -1.7094 17 1 5.0340 -8.3922 -1.0080 18 1 3.1286 -9.7209 -1.7054 19 1 3.9255 -7.9130 -3.1110 20 6 1.7979 -5.3501 1.4193 21 6 0.7771 -6.1044 1.8644 22 6 0.9846 -6.2987 3.2493 23 6 2.1157 -5.6446 3.5693 24 8 2.6039 -5.0719 2.4570 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3634 0.8902 -0.5136 27 1 -0.3633 -0.8898 -0.5143 28 1 4.2066 1.7960 -0.0002 29 1 1.1988 -8.5433 -0.4196 30 1 -0.0427 -6.4898 1.2762 31 1 0.3543 -6.8613 3.9219 32 1 2.5562 -5.5891 4.5538 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263660492.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:34 Heat of formation + Delta-G solvation = -20.751540 kcal Electronic energy + Delta-G solvation = -20913.551934 eV Core-core repulsion = 17547.438228 eV Total energy + Delta-G solvation = -3366.113706 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.37842 -40.16440 -39.06234 -35.82678 -33.36488 -31.81214 -31.71680 -29.86118 -28.37288 -26.64177 -25.04955 -23.45674 -21.84489 -20.56777 -19.57600 -18.99712 -18.38305 -17.08144 -16.68710 -16.29254 -15.71134 -15.44254 -15.02391 -14.58872 -14.46603 -14.27270 -13.52845 -13.12912 -12.84346 -12.47061 -12.35755 -12.10684 -11.83166 -11.61258 -11.36740 -11.26272 -11.15566 -10.98862 -10.42464 -10.22367 -10.02899 -9.68717 -9.52712 -9.48000 -8.86816 -8.80734 -8.66701 -7.28330 -6.25424 -4.45139 0.23409 1.25521 1.68379 2.45724 2.83431 3.19773 3.22325 3.24834 3.26555 3.39113 3.91883 4.12149 4.15678 4.24634 4.97768 5.01568 5.03649 5.51309 5.73810 5.80392 5.82111 5.89842 6.04814 6.31290 6.36996 6.63173 6.95510 7.09886 7.20578 7.29110 7.56671 7.63522 7.68348 7.77718 8.25929 8.41018 8.69345 9.21837 10.71910 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.005435 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.193309 B = 5150.456411 C = 5798.278659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.142 3.858 3 N -0.478 5.478 4 C 0.011 3.989 5 S 0.223 5.777 6 C -0.276 4.276 7 C 0.536 3.464 8 O -0.496 6.496 9 O -0.343 6.343 10 C 0.302 3.698 11 H 0.081 0.919 12 C -0.532 4.532 13 H 0.078 0.922 14 C 0.070 3.930 15 N -0.867 5.867 16 Si 0.915 3.085 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.272 1.272 20 C 0.018 3.982 21 C -0.173 4.173 22 C -0.218 4.218 23 C -0.088 4.088 24 O -0.179 6.179 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.204 0.796 29 H 0.270 0.730 30 H 0.146 0.854 31 H 0.131 0.869 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.748 11.481 2.358 12.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.003 3.997 3 N -0.193 5.193 4 C -0.283 4.283 5 S 0.479 5.521 6 C -0.398 4.398 7 C 0.378 3.622 8 O -0.387 6.387 9 O -0.259 6.259 10 C 0.249 3.751 11 H 0.098 0.902 12 C -0.569 4.569 13 H 0.096 0.904 14 C -0.136 4.136 15 N -0.501 5.501 16 Si 0.741 3.259 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.197 1.197 20 C -0.033 4.033 21 C -0.192 4.192 22 C -0.238 4.238 23 C -0.156 4.156 24 O -0.075 6.075 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.119 0.881 28 H 0.220 0.780 29 H 0.080 0.920 30 H 0.164 0.836 31 H 0.149 0.851 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.372 11.395 2.363 12.116 hybrid contribution -0.441 -1.064 -0.072 1.154 sum 2.931 10.331 2.291 10.980 Atomic orbital electron populations 1.20663 0.85877 1.04528 1.03797 1.21032 0.98669 0.84630 0.95397 1.66104 1.05076 1.31147 1.16930 1.28764 0.95480 1.01738 1.02287 1.84273 1.04794 1.00244 1.62801 1.25006 0.97077 0.96704 1.21042 1.19310 0.84954 0.84455 0.73452 1.90802 1.15857 1.85711 1.46282 1.86653 1.40001 1.16972 1.82232 1.19252 0.97449 0.73312 0.85064 0.90172 1.20845 1.06787 0.92516 1.36750 0.90405 1.24932 0.95813 0.97776 0.95032 1.70017 1.21334 1.16599 1.42151 0.86269 0.80444 0.79186 0.79952 1.19827 1.20862 1.19679 1.23536 0.89239 1.01789 0.88717 1.21290 1.01743 1.03337 0.92864 1.21718 0.99642 1.05570 0.96857 1.23607 0.98108 1.03404 0.90467 1.83985 1.47105 1.60320 1.16133 0.90021 0.90697 0.88103 0.77950 0.92007 0.83611 0.85112 0.79899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.26 9.72 36.01 0.35 -0.91 16 2 C 0.14 2.23 6.83 -83.52 -0.57 1.65 16 3 N -0.48 -6.73 10.49 -11.30 -0.12 -6.85 16 4 C 0.01 0.12 12.21 51.73 0.63 0.76 16 5 S 0.22 2.95 23.09 -107.50 -2.48 0.47 16 6 C -0.28 -4.78 6.52 -36.79 -0.24 -5.02 16 7 C 0.54 11.41 7.89 34.06 0.27 11.68 16 8 O -0.50 -11.22 13.59 -19.35 -0.26 -11.49 16 9 O -0.34 -8.09 9.73 -43.79 -0.43 -8.52 16 10 C 0.30 7.89 2.42 -29.03 -0.07 7.82 16 11 H 0.08 2.22 7.16 -51.93 -0.37 1.85 16 12 C -0.53 -14.43 8.89 -34.44 -0.31 -14.74 16 13 H 0.08 2.07 7.81 -52.49 -0.41 1.66 16 14 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 15 N -0.87 -23.44 10.49 55.43 0.58 -22.86 16 16 Si 0.92 20.57 29.54 -169.99 -5.02 15.55 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 20 C 0.02 0.46 5.66 -35.63 -0.20 0.26 16 21 C -0.17 -4.27 9.04 -39.71 -0.36 -4.62 16 22 C -0.22 -4.64 10.91 -39.70 -0.43 -5.07 16 23 C -0.09 -1.81 12.09 29.42 0.36 -1.46 16 24 O -0.18 -4.36 10.63 2.05 0.02 -4.34 16 25 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.10 1.58 6.06 -51.93 -0.31 1.26 16 28 H 0.20 1.34 8.06 -52.48 -0.42 0.91 16 29 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.15 3.69 7.51 -52.48 -0.39 3.29 16 31 H 0.13 2.35 8.06 -52.49 -0.42 1.93 16 32 H 0.18 2.84 8.06 -52.49 -0.42 2.42 16 LS Contribution 303.66 15.07 4.58 4.58 Total: -1.00 -30.91 303.66 -6.54 -37.45 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -2.74 Total: 3.89 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -0.67 Total: -7.88 kcal Atomic # 7 Polarization: -30.18 SS G_CDS: 0.46 Total: -29.72 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.67 Total: -24.34 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -2.48 Total: 0.47 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.91 -6.54 -37.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263660492.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.702 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds