Wall clock time and date at job start Tue Mar 31 2020 06:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30910 * 123.03415 * 2 1 4 4 C 1.29390 * 117.46802 * 180.02562 * 3 2 1 5 5 S 1.70924 * 110.58598 * 359.74515 * 4 3 2 6 6 C 1.36758 * 123.03422 * 180.02562 * 2 1 3 7 7 C 1.46502 * 126.17657 * 359.95362 * 6 2 1 8 8 O 1.21612 * 120.00358 * 0.02562 * 7 6 2 9 9 O 1.34877 * 119.99596 * 179.97438 * 7 6 2 10 10 C 1.45202 * 116.99670 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.47201 * 30.00582 * 10 9 7 12 12 C 1.50702 * 109.46885 * 150.00294 * 10 9 7 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 10 9 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 10 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 10 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 10 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 C 1.50700 * 109.47358 * 270.00397 * 10 9 7 21 21 C 1.34511 * 125.79031 * 144.71900 * 20 10 9 22 22 C 1.41379 * 106.84521 * 179.89176 * 21 20 10 23 23 C 1.34520 * 106.83536 * 0.36719 * 22 21 20 24 24 O 1.34296 * 108.42315 * 359.77591 * 23 22 21 25 25 H 1.08994 * 109.47186 * 269.97540 * 1 2 3 26 26 H 1.09003 * 109.47227 * 29.98203 * 1 2 3 27 27 H 1.09001 * 109.46963 * 149.97219 * 1 2 3 28 28 H 1.08004 * 124.70698 * 180.02562 * 4 3 2 29 29 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 30 30 H 1.08003 * 126.57938 * 0.02562 * 21 20 10 31 31 H 1.07992 * 126.58428 * 180.16419 * 22 21 20 32 32 H 1.07999 * 125.78572 * 179.75417 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2206 1.0975 0.0000 4 6 3.5085 0.9720 -0.0005 5 16 3.9514 -0.6789 0.0060 6 6 2.2525 -1.1465 -0.0005 7 6 1.7325 -2.5161 -0.0002 8 8 0.5321 -2.7109 0.0002 9 8 2.5853 -3.5611 -0.0013 10 6 1.9996 -4.8898 -0.0014 11 1 1.0383 -4.8631 -0.5146 12 6 2.9224 -5.8454 -0.7129 13 1 3.8560 -5.4899 -1.1235 14 6 2.5779 -7.1750 -0.8342 15 7 1.4413 -7.6080 -0.3339 16 14 3.7254 -8.3610 -1.7094 17 1 5.0340 -8.3922 -1.0080 18 1 3.1286 -9.7209 -1.7054 19 1 3.9255 -7.9130 -3.1110 20 6 1.7979 -5.3501 1.4193 21 6 0.7771 -6.1044 1.8644 22 6 0.9846 -6.2987 3.2493 23 6 2.1157 -5.6446 3.5693 24 8 2.6039 -5.0719 2.4570 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3634 0.8902 -0.5136 27 1 -0.3633 -0.8898 -0.5143 28 1 4.2066 1.7960 -0.0002 29 1 1.1988 -8.5433 -0.4196 30 1 -0.0427 -6.4898 1.2762 31 1 0.3543 -6.8613 3.9219 32 1 2.5562 -5.5891 4.5538 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263660492.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:34 Heat of formation + Delta-G solvation = -39.814715 kcal Electronic energy + Delta-G solvation = -20914.378575 eV Core-core repulsion = 17547.438228 eV Total energy + Delta-G solvation = -3366.940347 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.19167 -41.55597 -40.51587 -37.58386 -35.34166 -33.53836 -33.00936 -31.68407 -29.72328 -28.52181 -26.13657 -25.25492 -23.44078 -22.35688 -21.34162 -20.45687 -19.64418 -18.92033 -18.36346 -17.82519 -17.35386 -16.98770 -16.79079 -16.37731 -15.82845 -15.63763 -14.81221 -14.65046 -14.59563 -13.93522 -13.61299 -13.56162 -13.52518 -13.46426 -13.19031 -13.01367 -12.81102 -12.41710 -12.22984 -12.10427 -11.61780 -11.41758 -10.84687 -10.82562 -10.68311 -10.51424 -9.91756 -9.12701 -8.24538 -6.54868 -0.93076 0.14834 0.59760 1.08179 1.19922 1.39013 1.43482 1.50097 1.74746 1.81053 2.08694 2.36951 2.40832 2.99752 3.11812 3.69382 3.93393 4.12948 4.22636 4.39914 4.55891 4.60493 4.64643 4.68918 4.81748 5.12989 5.19072 5.32562 5.38947 5.45269 5.62920 5.77467 5.91870 6.45010 6.46363 6.51238 6.78228 7.16363 8.70970 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.005435 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.193309 B = 5150.456411 C = 5798.278659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.157 3.843 3 N -0.496 5.496 4 C 0.053 3.947 5 S 0.240 5.760 6 C -0.330 4.330 7 C 0.531 3.469 8 O -0.525 6.525 9 O -0.351 6.351 10 C 0.306 3.694 11 H 0.046 0.954 12 C -0.558 4.558 13 H 0.074 0.926 14 C 0.027 3.973 15 N -0.888 5.888 16 Si 0.981 3.019 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.263 1.263 20 C -0.011 4.011 21 C -0.187 4.187 22 C -0.228 4.228 23 C -0.071 4.071 24 O -0.197 6.197 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.078 0.922 28 H 0.259 0.741 29 H 0.272 0.728 30 H 0.128 0.872 31 H 0.166 0.834 32 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.607 12.776 3.407 14.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.016 3.984 3 N -0.211 5.211 4 C -0.240 4.240 5 S 0.498 5.502 6 C -0.452 4.452 7 C 0.376 3.624 8 O -0.417 6.417 9 O -0.268 6.268 10 C 0.252 3.748 11 H 0.064 0.936 12 C -0.595 4.595 13 H 0.093 0.907 14 C -0.177 4.177 15 N -0.523 5.523 16 Si 0.803 3.197 17 H -0.194 1.194 18 H -0.201 1.201 19 H -0.187 1.187 20 C -0.062 4.062 21 C -0.207 4.207 22 C -0.247 4.247 23 C -0.137 4.137 24 O -0.094 6.094 25 H 0.107 0.893 26 H 0.117 0.883 27 H 0.097 0.903 28 H 0.274 0.726 29 H 0.081 0.919 30 H 0.146 0.854 31 H 0.183 0.817 32 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 5.237 12.705 3.411 14.159 hybrid contribution -1.017 -1.295 -0.332 1.680 sum 4.220 11.410 3.079 12.549 Atomic orbital electron populations 1.20674 0.85539 1.04547 1.04196 1.21286 0.99332 0.84641 0.93151 1.66232 1.06157 1.29881 1.18825 1.29720 0.95181 1.02013 0.97050 1.84178 1.01877 1.01443 1.62752 1.24774 1.00023 0.94701 1.25721 1.19919 0.84651 0.85370 0.72490 1.90767 1.16867 1.86314 1.47760 1.86619 1.40530 1.16768 1.82872 1.18830 0.95753 0.74550 0.85654 0.93647 1.21102 1.06972 0.93510 1.37900 0.90739 1.25806 0.97318 0.99107 0.95481 1.70151 1.22580 1.16872 1.42660 0.85269 0.78336 0.76994 0.79071 1.19427 1.20070 1.18724 1.23343 0.90428 1.03348 0.89060 1.21361 1.01139 1.03319 0.94845 1.22066 1.00728 1.06371 0.95520 1.24678 0.97283 1.00708 0.91067 1.83957 1.47411 1.61135 1.16897 0.89329 0.88281 0.90348 0.72578 0.91899 0.85449 0.81657 0.74457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.57 9.72 71.24 0.69 -1.88 16 2 C 0.16 4.82 6.83 42.35 0.29 5.11 16 3 N -0.50 -12.67 10.49 -189.67 -1.99 -14.66 16 4 C 0.05 0.98 12.21 130.60 1.59 2.58 16 5 S 0.24 6.01 23.09 -56.49 -1.30 4.70 16 6 C -0.33 -11.62 6.52 24.08 0.16 -11.46 16 7 C 0.53 23.96 7.89 69.98 0.55 24.51 16 8 O -0.52 -25.63 13.59 19.47 0.26 -25.37 16 9 O -0.35 -17.59 9.73 -55.21 -0.54 -18.13 16 10 C 0.31 16.98 2.42 29.10 0.07 17.05 16 11 H 0.05 2.77 7.16 -2.38 -0.02 2.75 16 12 C -0.56 -31.59 8.89 25.60 0.23 -31.36 16 13 H 0.07 4.12 7.81 -2.91 -0.02 4.09 16 14 C 0.03 1.44 5.30 84.66 0.45 1.89 16 15 N -0.89 -49.68 10.49 21.45 0.23 -49.46 16 16 Si 0.98 42.56 29.54 68.60 2.03 44.58 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 18 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 20 C -0.01 -0.61 5.66 24.83 0.14 -0.47 16 21 C -0.19 -9.54 9.04 22.19 0.20 -9.34 16 22 C -0.23 -9.44 10.91 22.19 0.24 -9.20 16 23 C -0.07 -2.77 12.09 66.97 0.81 -1.96 16 24 O -0.20 -9.64 10.63 1.08 0.01 -9.63 16 25 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.08 2.60 6.06 -2.39 -0.01 2.58 16 28 H 0.26 1.79 8.06 -2.91 -0.02 1.77 16 29 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 30 H 0.13 6.85 7.51 -2.91 -0.02 6.83 16 31 H 0.17 5.53 8.06 -2.91 -0.02 5.51 16 32 H 0.24 6.30 8.06 -2.91 -0.02 6.28 16 Total: -1.00 -71.61 303.66 5.29 -66.32 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 1.17 Total: 16.15 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: 5.42 Total: -14.52 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: -1.76 Total: -64.11 kcal Atomic # 8 Polarization: -52.86 SS G_CDS: -0.26 Total: -53.12 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: 6.01 SS G_CDS: -1.30 Total: 4.70 kcal Total: -71.61 5.29 -66.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263660492.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.508 kcal (2) G-P(sol) polarization free energy of solvation -71.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds