Wall clock time and date at job start Tue Mar 31 2020 06:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99937 * 2 1 4 4 H 1.48498 * 109.47411 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47207 * 299.99605 * 3 2 1 6 6 H 1.48497 * 109.47282 * 59.99843 * 3 2 1 7 7 C 1.37875 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00209 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99947 * 0.02562 * 7 2 1 10 10 S 1.81400 * 109.47198 * 180.02562 * 9 7 2 11 11 C 1.81397 * 102.99944 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47057 * 179.97438 * 11 10 9 13 13 O 1.21395 * 119.99982 * 0.02562 * 12 11 10 14 14 C 1.41714 * 120.00025 * 179.97438 * 12 11 10 15 15 C 1.37885 * 126.90571 * 0.03153 * 14 12 11 16 16 N 1.34642 * 109.62057 * 179.73607 * 15 14 12 17 17 H 0.96998 * 124.64398 * 180.02562 * 16 15 14 18 18 C 1.38101 * 110.70545 * 0.02562 * 16 15 14 19 19 C 1.39130 * 133.00720 * 180.02562 * 18 16 15 20 20 C 1.37769 * 119.98222 * 179.97438 * 19 18 16 21 21 C 1.38918 * 120.61203 * 0.02562 * 20 19 18 22 22 F 1.35104 * 119.89405 * 179.97438 * 21 20 19 23 23 C 1.38004 * 120.21308 * 359.97088 * 21 20 19 24 24 C 1.39190 * 119.65231 * 0.04646 * 23 21 20 25 25 H 0.96994 * 120.00143 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47170 * 59.99357 * 9 7 2 27 27 H 1.09003 * 109.47044 * 299.99596 * 9 7 2 28 28 H 1.09005 * 109.47348 * 60.00282 * 11 10 9 29 29 H 1.08992 * 109.47457 * 299.99802 * 11 10 9 30 30 H 1.08001 * 125.18700 * 359.73133 * 15 14 12 31 31 H 1.07995 * 120.01381 * 359.93275 * 19 18 16 32 32 H 1.08000 * 119.69508 * 179.97438 * 20 19 18 33 33 H 1.07998 * 120.17368 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 16 2.4299 -3.8779 0.0021 11 6 1.3516 -5.3366 0.0027 12 6 2.1956 -6.5852 0.0033 13 8 3.4065 -6.4993 0.0038 14 6 1.5757 -7.8595 0.0044 15 6 0.2220 -8.1218 0.0044 16 7 0.0194 -9.4529 -0.0002 17 1 -0.8525 -9.8779 -0.0015 18 6 1.2230 -10.1300 -0.0028 19 6 1.5512 -11.4820 -0.0081 20 6 2.8733 -11.8695 -0.0101 21 6 3.8884 -10.9212 -0.0065 22 9 5.1800 -11.3174 -0.0081 23 6 3.5818 -9.5757 -0.0013 24 6 2.2494 -9.1730 0.0012 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 0.7228 -5.3241 -0.8876 29 1 0.7221 -5.3228 0.8923 30 1 -0.5568 -7.3736 0.0077 31 1 0.7699 -12.2276 -0.0099 32 1 3.1228 -12.9203 -0.0138 33 1 4.3715 -8.8390 0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307353504.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:43 Heat of formation + Delta-G solvation = -29.673174 kcal Electronic energy + Delta-G solvation = -19281.515129 eV Core-core repulsion = 15927.387342 eV Total energy + Delta-G solvation = -3354.127788 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.063 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.95543 -41.80999 -38.64165 -37.07173 -33.12325 -32.55149 -30.82614 -29.48550 -28.58343 -28.23621 -23.55722 -23.46234 -22.87707 -22.17639 -19.18079 -18.26250 -17.58397 -16.61947 -16.41817 -15.80088 -15.72615 -15.43997 -15.27531 -15.23331 -14.51213 -14.38372 -14.21224 -13.86226 -13.40738 -13.03010 -12.74902 -12.56887 -12.44077 -12.22786 -11.81556 -11.70312 -11.29625 -10.87791 -10.67155 -10.05925 -9.99539 -9.64892 -9.40743 -8.73664 -8.60117 -8.58048 -8.12117 -6.60831 -6.18200 -4.21241 0.49560 1.01910 1.51962 2.52209 2.56870 3.04553 3.27156 3.34312 3.41955 3.50730 3.84507 3.99067 4.24854 4.32561 4.38567 4.49170 4.72550 4.80192 4.96934 5.14636 5.19528 5.31491 5.47459 5.64096 5.66749 5.81021 5.92898 5.93138 6.17443 6.29526 6.68785 6.91660 7.10448 7.11150 7.78096 7.89654 8.04121 8.81479 9.41834 10.93466 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.035014 B = 0.002835 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.497241 B = 9874.754788 C =10653.795066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.508 4.508 8 H 0.068 0.932 9 C 0.077 3.923 10 S -0.253 6.253 11 C -0.153 4.153 12 C 0.435 3.565 13 O -0.441 6.441 14 C -0.257 4.257 15 C 0.142 3.858 16 N -0.568 5.568 17 H 0.423 0.577 18 C 0.065 3.935 19 C -0.092 4.092 20 C -0.137 4.137 21 C 0.081 3.919 22 F -0.139 7.139 23 C -0.102 4.102 24 C -0.034 4.034 25 H 0.264 0.736 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.191 0.809 31 H 0.133 0.867 32 H 0.140 0.860 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.951 -24.728 -0.008 25.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.548 4.548 8 H 0.086 0.914 9 C -0.070 4.070 10 S -0.026 6.026 11 C -0.301 4.301 12 C 0.312 3.688 13 O -0.316 6.316 14 C -0.266 4.266 15 C 0.007 3.993 16 N -0.168 5.168 17 H 0.261 0.739 18 C -0.040 4.040 19 C -0.112 4.112 20 C -0.157 4.157 21 C 0.061 3.939 22 F -0.118 7.118 23 C -0.121 4.121 24 C -0.038 4.038 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.208 0.792 31 H 0.151 0.849 32 H 0.158 0.842 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.404 -24.617 -0.008 24.734 hybrid contribution -1.520 0.634 -0.001 1.647 sum -3.924 -23.983 -0.009 24.302 Atomic orbital electron populations 1.69957 1.06139 1.27157 1.50109 1.24957 0.94975 0.99282 0.94695 0.86299 0.80224 0.82514 0.77680 1.19334 1.20758 1.20762 1.20716 0.93596 0.88687 1.51751 0.91352 1.21131 0.94327 0.91620 0.99938 1.87201 1.18158 0.99286 1.97987 1.23808 1.03083 0.97449 1.05758 1.19527 0.89063 0.87375 0.72792 1.90565 1.15869 1.88928 1.36218 1.19924 0.92361 0.93659 1.20692 1.22708 0.97430 0.84618 0.94574 1.41416 1.07832 1.05766 1.61792 0.73928 1.18274 0.85068 0.93483 1.07139 1.19834 0.96188 0.91793 1.03372 1.20761 0.91250 0.99643 1.04033 1.17398 0.78546 0.92501 1.05440 1.91501 1.34744 1.91378 1.94168 1.20624 0.96483 0.94370 1.00667 1.18567 0.91811 0.91678 1.01714 0.92635 0.94696 0.94703 0.87991 0.87982 0.79187 0.84946 0.84245 0.83459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.91 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.49 9.13 -34.44 -0.31 -14.81 16 8 H 0.07 1.98 7.71 -52.49 -0.40 1.57 16 9 C 0.08 1.99 5.70 36.01 0.21 2.20 16 10 S -0.25 -5.76 20.79 -107.50 -2.24 -8.00 16 11 C -0.15 -2.48 5.70 36.01 0.21 -2.27 16 12 C 0.44 7.05 6.97 -32.98 -0.23 6.82 16 13 O -0.44 -8.79 15.50 5.46 0.08 -8.71 16 14 C -0.26 -3.25 6.11 -104.87 -0.64 -3.89 16 15 C 0.14 1.14 11.31 -16.45 -0.19 0.95 16 16 N -0.57 -3.66 5.94 -10.29 -0.06 -3.72 16 17 H 0.42 1.06 8.96 -40.82 -0.37 0.69 16 18 C 0.06 0.60 7.24 -83.92 -0.61 -0.01 16 19 C -0.09 -0.69 10.07 -39.42 -0.40 -1.09 16 20 C -0.14 -1.19 9.99 -39.50 -0.39 -1.58 16 21 C 0.08 0.94 7.29 -39.42 -0.29 0.65 16 22 F -0.14 -1.71 17.26 2.25 0.04 -1.68 16 23 C -0.10 -1.36 9.77 -39.31 -0.38 -1.74 16 24 C -0.03 -0.43 6.24 -104.93 -0.65 -1.08 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.03 0.92 8.14 -51.92 -0.42 0.50 16 28 H 0.10 1.44 8.14 -51.92 -0.42 1.02 16 29 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.19 0.87 7.91 -52.49 -0.42 0.45 16 31 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 32 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.15 2.15 7.38 -52.49 -0.39 1.77 16 LS Contribution 313.57 15.07 4.73 4.73 Total: -1.00 -34.79 313.57 -8.76 -43.55 By element: Atomic # 1 Polarization: -0.17 SS G_CDS: -3.24 Total: -3.42 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -3.78 Total: -14.14 kcal Atomic # 7 Polarization: -29.55 SS G_CDS: 0.68 Total: -28.88 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.71 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -5.76 SS G_CDS: -2.24 Total: -8.00 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.79 -8.76 -43.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307353504.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.880 kcal (2) G-P(sol) polarization free energy of solvation -34.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds