Wall clock time and date at job start Tue Mar 31 2020 06:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99937 * 2 1 4 4 H 1.48498 * 109.47411 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47207 * 299.99605 * 3 2 1 6 6 H 1.48497 * 109.47282 * 59.99843 * 3 2 1 7 7 C 1.37875 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00209 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99947 * 0.02562 * 7 2 1 10 10 S 1.81400 * 109.47198 * 180.02562 * 9 7 2 11 11 C 1.81397 * 102.99944 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47057 * 179.97438 * 11 10 9 13 13 O 1.21395 * 119.99982 * 0.02562 * 12 11 10 14 14 C 1.41714 * 120.00025 * 179.97438 * 12 11 10 15 15 C 1.37885 * 126.90571 * 0.03153 * 14 12 11 16 16 N 1.34642 * 109.62057 * 179.73607 * 15 14 12 17 17 H 0.96998 * 124.64398 * 180.02562 * 16 15 14 18 18 C 1.38101 * 110.70545 * 0.02562 * 16 15 14 19 19 C 1.39130 * 133.00720 * 180.02562 * 18 16 15 20 20 C 1.37769 * 119.98222 * 179.97438 * 19 18 16 21 21 C 1.38918 * 120.61203 * 0.02562 * 20 19 18 22 22 F 1.35104 * 119.89405 * 179.97438 * 21 20 19 23 23 C 1.38004 * 120.21308 * 359.97088 * 21 20 19 24 24 C 1.39190 * 119.65231 * 0.04646 * 23 21 20 25 25 H 0.96994 * 120.00143 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47170 * 59.99357 * 9 7 2 27 27 H 1.09003 * 109.47044 * 299.99596 * 9 7 2 28 28 H 1.09005 * 109.47348 * 60.00282 * 11 10 9 29 29 H 1.08992 * 109.47457 * 299.99802 * 11 10 9 30 30 H 1.08001 * 125.18700 * 359.73133 * 15 14 12 31 31 H 1.07995 * 120.01381 * 359.93275 * 19 18 16 32 32 H 1.08000 * 119.69508 * 179.97438 * 20 19 18 33 33 H 1.07998 * 120.17368 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 16 2.4299 -3.8779 0.0021 11 6 1.3516 -5.3366 0.0027 12 6 2.1956 -6.5852 0.0033 13 8 3.4065 -6.4993 0.0038 14 6 1.5757 -7.8595 0.0044 15 6 0.2220 -8.1218 0.0044 16 7 0.0194 -9.4529 -0.0002 17 1 -0.8525 -9.8779 -0.0015 18 6 1.2230 -10.1300 -0.0028 19 6 1.5512 -11.4820 -0.0081 20 6 2.8733 -11.8695 -0.0101 21 6 3.8884 -10.9212 -0.0065 22 9 5.1800 -11.3174 -0.0081 23 6 3.5818 -9.5757 -0.0013 24 6 2.2494 -9.1730 0.0012 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 0.7228 -5.3241 -0.8876 29 1 0.7221 -5.3228 0.8923 30 1 -0.5568 -7.3736 0.0077 31 1 0.7699 -12.2276 -0.0099 32 1 3.1228 -12.9203 -0.0138 33 1 4.3715 -8.8390 0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307353504.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:42 Heat of formation + Delta-G solvation = -51.629306 kcal Electronic energy + Delta-G solvation = -19282.467219 eV Core-core repulsion = 15927.387342 eV Total energy + Delta-G solvation = -3355.079877 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.063 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.88455 -42.56948 -39.86685 -37.81603 -35.27439 -33.43509 -31.89240 -30.62112 -30.25648 -29.30723 -25.27896 -24.27449 -24.18391 -22.94753 -20.11112 -19.13368 -18.64302 -18.41545 -17.38510 -17.15490 -16.71956 -16.65495 -16.43165 -16.35351 -16.10301 -15.34965 -15.31636 -14.88039 -14.47620 -14.37968 -14.20328 -14.04701 -13.78339 -13.58497 -13.35949 -12.73863 -12.57527 -12.45069 -12.11901 -11.97271 -11.58345 -10.88178 -10.74035 -10.73364 -10.58407 -9.33675 -8.94071 -8.45150 -8.32887 -6.44213 -0.30061 0.22630 0.62714 0.92121 1.39760 1.40602 1.55470 1.94496 2.07355 2.10026 2.37945 2.65057 3.01873 3.11017 3.28766 3.56699 3.81275 3.98674 4.05098 4.23794 4.28700 4.38097 4.43630 4.59414 4.83875 4.96553 4.99808 4.99910 5.13765 5.16546 5.38507 5.41397 5.59177 5.90773 5.92454 6.44600 6.62256 6.75492 7.23160 8.79274 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.035014 B = 0.002835 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.497241 B = 9874.754788 C =10653.795066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.019 3.981 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.538 4.538 8 H 0.054 0.946 9 C 0.091 3.909 10 S -0.306 6.306 11 C -0.134 4.134 12 C 0.438 3.562 13 O -0.503 6.503 14 C -0.315 4.315 15 C 0.195 3.805 16 N -0.539 5.539 17 H 0.449 0.551 18 C 0.062 3.938 19 C -0.066 4.066 20 C -0.139 4.139 21 C 0.071 3.929 22 F -0.151 7.151 23 C -0.143 4.143 24 C -0.059 4.059 25 H 0.271 0.729 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.236 0.764 31 H 0.182 0.818 32 H 0.170 0.830 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.205 -26.853 -0.013 27.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.182 4.182 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.576 4.576 8 H 0.072 0.928 9 C -0.057 4.057 10 S -0.079 6.079 11 C -0.282 4.282 12 C 0.320 3.680 13 O -0.383 6.383 14 C -0.325 4.325 15 C 0.056 3.944 16 N -0.140 5.140 17 H 0.292 0.708 18 C -0.042 4.042 19 C -0.085 4.085 20 C -0.159 4.159 21 C 0.052 3.948 22 F -0.130 7.130 23 C -0.163 4.163 24 C -0.063 4.063 25 H 0.080 0.920 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.149 0.851 29 H 0.149 0.851 30 H 0.252 0.748 31 H 0.199 0.801 32 H 0.188 0.812 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.707 -26.785 -0.012 27.386 hybrid contribution -0.629 1.094 0.000 1.262 sum -6.337 -25.691 -0.012 26.461 Atomic orbital electron populations 1.70027 1.07342 1.28467 1.50167 1.25810 0.95922 1.02669 0.93835 0.85289 0.78602 0.78151 0.78376 1.19580 1.19546 1.19557 1.21003 0.93268 0.90590 1.52786 0.92765 1.20780 0.94119 0.92283 0.98475 1.87328 1.20357 1.02103 1.98154 1.23955 1.02134 0.93590 1.08493 1.19800 0.88332 0.88581 0.71309 1.90555 1.18053 1.89526 1.40158 1.19669 0.94574 0.92029 1.26201 1.23262 0.96231 0.85843 0.89081 1.41435 1.08261 1.05136 1.59216 0.70807 1.18410 0.85087 0.93706 1.07023 1.20356 0.96695 0.91836 0.99639 1.21117 0.90951 1.00356 1.03435 1.17722 0.78870 0.92598 1.05645 1.91462 1.35847 1.91372 1.94293 1.20506 0.96685 0.94724 1.04403 1.18797 0.92291 0.92956 1.02277 0.92007 0.95946 0.95953 0.85124 0.85110 0.74776 0.80105 0.81242 0.87098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.44 13.29 21.45 0.28 -53.16 16 2 C 0.02 1.05 5.46 84.65 0.46 1.52 16 3 Si 0.97 44.44 29.54 68.60 2.03 46.47 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.54 -31.53 9.13 25.60 0.23 -31.30 16 8 H 0.05 3.26 7.71 -2.91 -0.02 3.24 16 9 C 0.09 4.83 5.70 71.24 0.41 5.24 16 10 S -0.31 -14.46 20.79 -56.49 -1.17 -15.63 16 11 C -0.13 -4.25 5.70 71.24 0.41 -3.85 16 12 C 0.44 14.55 6.97 26.55 0.19 14.74 16 13 O -0.50 -21.81 15.50 -3.39 -0.05 -21.86 16 14 C -0.32 -7.69 6.11 -20.03 -0.12 -7.82 16 15 C 0.20 2.26 11.31 84.18 0.95 3.21 16 16 N -0.54 -4.09 5.94 -186.48 -1.11 -5.19 16 17 H 0.45 -0.79 8.96 -92.71 -0.83 -1.62 16 18 C 0.06 0.94 7.24 38.88 0.28 1.22 16 19 C -0.07 -0.70 10.07 22.37 0.23 -0.47 16 20 C -0.14 -2.05 9.99 22.32 0.22 -1.83 16 21 C 0.07 1.70 7.29 22.38 0.16 1.86 16 22 F -0.15 -3.95 17.26 44.97 0.78 -3.17 16 23 C -0.14 -4.16 9.77 22.44 0.22 -3.94 16 24 C -0.06 -1.50 6.24 -20.06 -0.13 -1.62 16 25 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 26 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.13 3.41 8.14 -2.39 -0.02 3.40 16 29 H 0.13 3.42 8.14 -2.39 -0.02 3.40 16 30 H 0.24 0.60 7.91 -2.91 -0.02 0.57 16 31 H 0.18 0.23 8.06 -2.91 -0.02 0.20 16 32 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 33 H 0.11 3.87 7.38 -2.91 -0.02 3.84 16 Total: -1.00 -83.44 313.57 4.59 -78.85 By element: Atomic # 1 Polarization: -3.59 SS G_CDS: 0.33 Total: -3.26 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 3.51 Total: -23.04 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -0.82 Total: -58.35 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.05 Total: -21.86 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.78 Total: -3.17 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: -14.46 SS G_CDS: -1.17 Total: -15.63 kcal Total: -83.44 4.59 -78.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307353504.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.219 kcal (2) G-P(sol) polarization free energy of solvation -83.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds