Wall clock time and date at job start Tue Mar 31 2020 07:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38703 * 119.70172 * 2 1 4 4 C 1.37732 * 119.97432 * 179.77890 * 3 2 1 5 5 C 1.39248 * 120.20548 * 0.51241 * 4 3 2 6 6 S 1.76194 * 131.16510 * 179.79344 * 5 4 3 7 7 C 1.75796 * 90.45668 * 179.71820 * 6 5 4 8 8 S 1.76199 * 124.82292 * 180.02562 * 7 6 5 9 9 C 1.81002 * 100.00037 * 359.97438 * 8 7 6 10 10 H 1.09001 * 109.46839 * 304.99947 * 9 8 7 11 11 C 1.52995 * 109.47158 * 64.99737 * 9 8 7 12 12 C 1.53004 * 109.47213 * 184.99922 * 9 8 7 13 13 C 1.50696 * 109.46978 * 65.00021 * 12 9 8 14 14 H 1.08007 * 120.00327 * 359.97438 * 13 12 9 15 15 C 1.37884 * 120.00132 * 180.02562 * 13 12 9 16 16 N 1.31510 * 119.99401 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00175 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47408 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47340 * 119.99595 * 17 15 13 20 20 H 1.48499 * 109.47175 * 239.99824 * 17 15 13 21 21 N 1.28976 * 110.35571 * 0.02562 * 7 6 5 22 22 C 1.34780 * 117.86791 * 0.02562 * 21 7 6 23 23 C 1.37204 * 119.69528 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47005 * 269.98078 * 1 2 3 25 25 H 1.09004 * 109.46799 * 29.97353 * 1 2 3 26 26 H 1.08999 * 109.47769 * 149.97575 * 1 2 3 27 27 H 1.08000 * 120.01598 * 0.02562 * 3 2 1 28 28 H 1.08003 * 119.89899 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.47476 * 300.00096 * 11 9 8 30 30 H 1.09001 * 109.47074 * 60.00354 * 11 9 8 31 31 H 1.09001 * 109.47529 * 179.97438 * 11 9 8 32 32 H 1.08997 * 109.47304 * 184.99854 * 12 9 8 33 33 H 1.08998 * 109.47057 * 305.00176 * 12 9 8 34 34 H 0.97009 * 119.99675 * 179.97438 * 16 15 13 35 35 H 1.07998 * 119.78690 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.2048 0.0000 4 6 3.5716 1.2114 0.0046 5 6 4.2779 0.0113 -0.0015 6 16 6.0093 -0.3154 -0.0028 7 6 5.6971 -2.0454 -0.0033 8 16 6.9419 -3.2924 -0.0040 9 6 8.4255 -2.2556 -0.0049 10 1 8.3851 -1.5644 -0.8467 11 6 8.4951 -1.4637 1.3024 12 6 9.6667 -3.1414 -0.1313 13 6 9.6593 -3.8279 -1.4727 14 1 8.8500 -3.6506 -2.1657 15 6 10.6851 -4.6833 -1.8151 16 7 11.6702 -4.8995 -0.9711 17 14 10.6763 -5.5338 -3.4782 18 1 9.4671 -5.1247 -4.2370 19 1 11.8922 -5.1475 -4.2381 20 1 10.6623 -7.0056 -3.2814 21 7 4.4274 -2.2722 -0.0030 22 6 3.5977 -1.2100 -0.0030 23 6 2.1867 -1.1919 -0.0005 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3633 0.8903 -0.5134 26 1 -0.3634 -0.8897 -0.5142 27 1 1.6497 2.1374 0.0004 28 1 4.1055 2.1502 0.0050 29 1 7.6109 -0.8327 1.3924 30 1 8.5354 -2.1550 2.1442 31 1 9.3887 -0.8396 1.3021 32 1 10.5624 -2.5266 -0.0427 33 1 9.6605 -3.8906 0.6604 34 1 12.3917 -5.5016 -1.2118 35 1 1.6383 -2.1222 -0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307397359.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:31 Heat of formation + Delta-G solvation = 33.634974 kcal Electronic energy + Delta-G solvation = -17780.154653 eV Core-core repulsion = 14994.985288 eV Total energy + Delta-G solvation = -2785.169364 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.060 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.13190 -36.97387 -34.85298 -32.50916 -32.21240 -30.22069 -27.79726 -27.06641 -24.86865 -23.49667 -22.63687 -21.50913 -20.06181 -18.48489 -16.72995 -16.52429 -16.32178 -15.52140 -14.98493 -14.75916 -14.58655 -14.28734 -13.87885 -13.65098 -13.32694 -12.86886 -12.53570 -12.33346 -12.07603 -11.88367 -11.75889 -11.69950 -11.30510 -11.03371 -10.81617 -10.73930 -10.57911 -9.93346 -9.87306 -9.63301 -9.34204 -9.22009 -9.01876 -8.48735 -7.99897 -7.15974 -6.13432 -4.16641 0.41037 1.06963 1.17033 1.53147 1.79324 2.31762 2.90822 3.27264 3.35508 3.40814 3.63407 4.28454 4.38177 4.59299 4.79149 4.99592 5.16974 5.24605 5.27903 5.36771 5.38561 5.42956 5.48245 5.72954 5.77882 5.84829 6.03739 6.14301 6.14790 6.35593 6.38705 6.46640 6.64300 7.35636 7.40752 7.65104 7.83102 8.16234 8.88182 9.48967 10.97412 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.030205 B = 0.003637 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.780917 B = 7696.366417 C = 8125.713924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.076 4.076 3 C -0.116 4.116 4 C -0.064 4.064 5 C -0.195 4.195 6 S 0.060 5.940 7 C 0.101 3.899 8 S 0.063 5.937 9 C -0.090 4.090 10 H 0.091 0.909 11 C -0.157 4.157 12 C 0.041 3.959 13 C -0.528 4.528 14 H 0.065 0.935 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.893 3.107 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.282 1.282 21 N -0.471 5.471 22 C 0.107 3.893 23 C -0.077 4.077 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.131 0.869 28 H 0.127 0.873 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.031 0.969 34 H 0.262 0.738 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.837 12.139 3.801 21.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.079 4.079 3 C -0.138 4.138 4 C -0.086 4.086 5 C -0.316 4.316 6 S 0.312 5.688 7 C -0.291 4.291 8 S 0.299 5.701 9 C -0.220 4.220 10 H 0.109 0.891 11 C -0.217 4.217 12 C 0.003 3.997 13 C -0.566 4.566 14 H 0.083 0.917 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.720 3.280 18 H -0.194 1.194 19 H -0.210 1.210 20 H -0.208 1.208 21 N -0.189 5.189 22 C -0.016 4.016 23 C -0.099 4.099 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.149 0.851 28 H 0.145 0.855 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.912 10.791 3.806 19.599 hybrid contribution -0.586 0.834 -0.946 1.391 sum -16.498 11.625 2.859 20.384 Atomic orbital electron populations 1.20782 0.90507 1.02988 1.02507 1.19622 0.96268 0.92423 0.99603 1.20909 0.93192 0.97721 1.01980 1.20271 0.93768 0.95217 0.99384 1.23853 0.97645 0.98548 1.11524 1.85242 1.02002 1.04636 1.76893 1.30058 0.99075 0.98824 1.01104 1.86446 0.92416 1.04568 1.86685 1.24076 0.97225 1.00357 1.00371 0.89072 1.22355 1.02029 1.00251 0.97048 1.19058 0.88419 0.93794 0.98474 1.21274 1.07845 1.26478 1.01047 0.91702 1.24975 0.95288 0.96448 0.97275 1.69955 1.10929 1.36609 1.35527 0.86509 0.78125 0.79436 0.83916 1.19427 1.20955 1.20836 1.66590 1.00705 1.31289 1.20336 1.19284 0.94811 0.85864 1.01622 1.20491 0.89958 0.98345 1.01066 0.90980 0.91322 0.91323 0.85149 0.85537 0.92731 0.91178 0.90861 0.93900 0.95076 0.92786 0.85050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.99 36.01 0.36 -0.43 16 2 C -0.08 -0.80 5.86 -104.82 -0.61 -1.42 16 3 C -0.12 -1.17 9.69 -39.59 -0.38 -1.56 16 4 C -0.06 -0.76 10.06 -39.39 -0.40 -1.16 16 5 C -0.20 -2.95 6.52 -38.62 -0.25 -3.21 16 6 S 0.06 0.95 18.90 -107.50 -2.03 -1.08 16 7 C 0.10 1.84 7.50 51.56 0.39 2.23 16 8 S 0.06 1.23 21.07 -107.50 -2.26 -1.04 16 9 C -0.09 -1.74 2.09 -26.73 -0.06 -1.80 16 10 H 0.09 1.75 7.74 -51.92 -0.40 1.35 16 11 C -0.16 -2.51 8.85 37.15 0.33 -2.18 16 12 C 0.04 0.97 4.44 -27.88 -0.12 0.85 16 13 C -0.53 -13.98 8.53 -34.44 -0.29 -14.27 16 14 H 0.06 1.71 7.60 -52.48 -0.40 1.31 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -25.50 13.29 55.43 0.74 -24.77 16 17 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 N -0.47 -8.77 10.62 -10.59 -0.11 -8.89 16 22 C 0.11 1.76 6.94 -84.90 -0.59 1.17 16 23 C -0.08 -1.02 9.72 -38.87 -0.38 -1.39 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 26 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 27 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 28 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 29 H 0.05 0.81 4.67 -35.36 -0.17 0.65 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 319.74 15.07 4.82 4.82 Total: -1.00 -29.65 319.74 -10.30 -39.95 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -4.32 Total: -3.57 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -2.11 Total: -21.55 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.62 Total: -33.65 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -4.30 Total: -2.12 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.65 -10.30 -39.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307397359.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.585 kcal (2) G-P(sol) polarization free energy of solvation -29.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds