Wall clock time and date at job start Tue Mar 31 2020 07:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38703 * 119.70172 * 2 1 4 4 C 1.37732 * 119.97432 * 179.77890 * 3 2 1 5 5 C 1.39248 * 120.20548 * 0.51241 * 4 3 2 6 6 S 1.76194 * 131.16510 * 179.79344 * 5 4 3 7 7 C 1.75796 * 90.45668 * 179.71820 * 6 5 4 8 8 S 1.76199 * 124.82292 * 180.02562 * 7 6 5 9 9 C 1.81002 * 100.00037 * 359.97438 * 8 7 6 10 10 H 1.09001 * 109.46839 * 304.99947 * 9 8 7 11 11 C 1.52995 * 109.47158 * 64.99737 * 9 8 7 12 12 C 1.53004 * 109.47213 * 184.99922 * 9 8 7 13 13 C 1.50696 * 109.46978 * 65.00021 * 12 9 8 14 14 H 1.08007 * 120.00327 * 359.97438 * 13 12 9 15 15 C 1.37884 * 120.00132 * 180.02562 * 13 12 9 16 16 N 1.31510 * 119.99401 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00175 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47408 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47340 * 119.99595 * 17 15 13 20 20 H 1.48499 * 109.47175 * 239.99824 * 17 15 13 21 21 N 1.28976 * 110.35571 * 0.02562 * 7 6 5 22 22 C 1.34780 * 117.86791 * 0.02562 * 21 7 6 23 23 C 1.37204 * 119.69528 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47005 * 269.98078 * 1 2 3 25 25 H 1.09004 * 109.46799 * 29.97353 * 1 2 3 26 26 H 1.08999 * 109.47769 * 149.97575 * 1 2 3 27 27 H 1.08000 * 120.01598 * 0.02562 * 3 2 1 28 28 H 1.08003 * 119.89899 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.47476 * 300.00096 * 11 9 8 30 30 H 1.09001 * 109.47074 * 60.00354 * 11 9 8 31 31 H 1.09001 * 109.47529 * 179.97438 * 11 9 8 32 32 H 1.08997 * 109.47304 * 184.99854 * 12 9 8 33 33 H 1.08998 * 109.47057 * 305.00176 * 12 9 8 34 34 H 0.97009 * 119.99675 * 179.97438 * 16 15 13 35 35 H 1.07998 * 119.78690 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.2048 0.0000 4 6 3.5716 1.2114 0.0046 5 6 4.2779 0.0113 -0.0015 6 16 6.0093 -0.3154 -0.0028 7 6 5.6971 -2.0454 -0.0033 8 16 6.9419 -3.2924 -0.0040 9 6 8.4255 -2.2556 -0.0049 10 1 8.3851 -1.5644 -0.8467 11 6 8.4951 -1.4637 1.3024 12 6 9.6667 -3.1414 -0.1313 13 6 9.6593 -3.8279 -1.4727 14 1 8.8500 -3.6506 -2.1657 15 6 10.6851 -4.6833 -1.8151 16 7 11.6702 -4.8995 -0.9711 17 14 10.6763 -5.5338 -3.4782 18 1 9.4671 -5.1247 -4.2370 19 1 11.8922 -5.1475 -4.2381 20 1 10.6623 -7.0056 -3.2814 21 7 4.4274 -2.2722 -0.0030 22 6 3.5977 -1.2100 -0.0030 23 6 2.1867 -1.1919 -0.0005 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3633 0.8903 -0.5134 26 1 -0.3634 -0.8897 -0.5142 27 1 1.6497 2.1374 0.0004 28 1 4.1055 2.1502 0.0050 29 1 7.6109 -0.8327 1.3924 30 1 8.5354 -2.1550 2.1442 31 1 9.3887 -0.8396 1.3021 32 1 10.5624 -2.5266 -0.0427 33 1 9.6605 -3.8906 0.6604 34 1 12.3917 -5.5016 -1.2118 35 1 1.6383 -2.1222 -0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307397359.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:30 Heat of formation + Delta-G solvation = 17.969485 kcal Electronic energy + Delta-G solvation = -17780.833959 eV Core-core repulsion = 14994.985288 eV Total energy + Delta-G solvation = -2785.848671 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.060 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.21607 -38.04831 -36.59402 -34.19456 -33.32829 -31.27113 -29.57181 -27.89318 -26.10361 -25.34074 -23.60695 -22.90121 -21.38518 -19.62846 -18.56589 -18.00016 -17.42222 -16.86787 -16.52122 -16.12869 -15.92157 -15.33369 -14.96584 -14.86133 -14.48119 -14.22058 -13.91113 -13.48051 -13.34593 -13.14573 -12.99652 -12.78200 -12.66313 -12.61647 -12.50187 -12.41249 -11.85852 -11.64700 -11.36892 -11.25600 -10.87374 -10.64152 -10.53203 -10.15367 -9.08987 -8.58196 -8.22507 -6.31031 -0.74793 -0.09155 0.10984 0.12689 0.59139 1.19759 1.38819 1.41516 1.44674 1.53469 2.40408 2.62130 3.13307 3.20635 3.68370 3.90380 3.95587 4.00073 4.18283 4.28167 4.37458 4.42072 4.68428 4.77145 4.83805 4.88944 4.94427 5.09356 5.12186 5.14325 5.23625 5.36031 5.44890 5.49670 5.74921 5.77723 6.13332 6.41635 6.80911 7.37596 8.88988 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.030205 B = 0.003637 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.780917 B = 7696.366417 C = 8125.713924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.067 4.067 3 C -0.095 4.095 4 C -0.072 4.072 5 C -0.207 4.207 6 S 0.081 5.919 7 C 0.079 3.921 8 S 0.013 5.987 9 C -0.074 4.074 10 H 0.090 0.910 11 C -0.150 4.150 12 C 0.048 3.952 13 C -0.536 4.536 14 H 0.062 0.938 15 C 0.010 3.990 16 N -0.926 5.926 17 Si 0.953 3.047 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.280 1.280 21 N -0.488 5.488 22 C 0.065 3.935 23 C -0.091 4.091 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.175 0.825 28 H 0.153 0.847 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.029 0.971 33 H 0.009 0.991 34 H 0.265 0.735 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.600 14.781 3.396 24.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.070 4.070 3 C -0.117 4.117 4 C -0.095 4.095 5 C -0.327 4.327 6 S 0.332 5.668 7 C -0.313 4.313 8 S 0.247 5.753 9 C -0.204 4.204 10 H 0.108 0.892 11 C -0.210 4.210 12 C 0.009 3.991 13 C -0.575 4.575 14 H 0.080 0.920 15 C -0.188 4.188 16 N -0.566 5.566 17 Si 0.779 3.221 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.206 1.206 21 N -0.206 5.206 22 C -0.056 4.056 23 C -0.113 4.113 24 H 0.105 0.895 25 H 0.110 0.890 26 H 0.090 0.910 27 H 0.192 0.808 28 H 0.170 0.830 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.047 0.953 33 H 0.027 0.973 34 H 0.073 0.927 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.697 13.448 3.399 23.280 hybrid contribution -0.032 0.191 -0.793 0.816 sum -18.729 13.640 2.606 23.315 Atomic orbital electron populations 1.20887 0.87584 1.04387 1.03808 1.20118 0.98276 0.91564 0.97037 1.21489 0.92568 0.99243 0.98409 1.20720 0.94789 0.94976 0.99002 1.24120 0.97032 0.99442 1.12124 1.84926 1.03093 1.02139 1.76620 1.29548 0.98606 0.99639 1.03469 1.86399 0.93828 1.06496 1.88549 1.23800 0.95064 0.99370 1.02162 0.89180 1.22310 1.03343 1.00165 0.95162 1.18839 0.90117 0.93569 0.96552 1.21604 1.07444 1.26398 1.02033 0.91999 1.25767 0.95118 0.97310 1.00632 1.70056 1.11680 1.37606 1.37302 0.85562 0.78297 0.78300 0.79977 1.19040 1.20188 1.20589 1.66514 1.01274 1.33360 1.19478 1.19630 0.95939 0.85790 1.04280 1.20789 0.88890 1.00012 1.01592 0.89541 0.89002 0.90971 0.80809 0.82967 0.91388 0.91109 0.89418 0.95265 0.97286 0.92655 0.84619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.99 71.24 0.71 -0.35 16 2 C -0.07 -1.17 5.86 -20.00 -0.12 -1.29 16 3 C -0.10 -1.47 9.69 22.26 0.22 -1.25 16 4 C -0.07 -1.47 10.06 22.39 0.23 -1.25 16 5 C -0.21 -5.97 6.52 22.89 0.15 -5.82 16 6 S 0.08 2.49 18.90 -56.49 -1.07 1.42 16 7 C 0.08 2.97 7.50 130.66 0.98 3.95 16 8 S 0.01 0.52 21.07 -56.49 -1.19 -0.67 16 9 C -0.07 -2.94 2.09 30.59 0.06 -2.88 16 10 H 0.09 3.54 7.74 -2.39 -0.02 3.52 16 11 C -0.15 -4.82 8.85 71.98 0.64 -4.19 16 12 C 0.05 2.35 4.44 29.85 0.13 2.48 16 13 C -0.54 -29.24 8.53 25.60 0.22 -29.02 16 14 H 0.06 3.34 7.60 -2.91 -0.02 3.32 16 15 C 0.01 0.58 5.46 84.66 0.46 1.05 16 16 N -0.93 -54.32 13.29 21.45 0.28 -54.04 16 17 Si 0.95 44.05 29.54 68.60 2.03 46.08 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 21 N -0.49 -18.61 10.62 -187.43 -1.99 -20.60 16 22 C 0.07 2.11 6.94 39.77 0.28 2.39 16 23 C -0.09 -2.27 9.72 22.73 0.22 -2.05 16 24 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.09 0.52 8.08 -2.39 -0.02 0.50 16 26 H 0.07 0.69 8.08 -2.39 -0.02 0.67 16 27 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 28 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 29 H 0.07 2.01 4.67 -12.92 -0.06 1.95 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16 35 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -66.59 319.74 3.28 -63.31 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: 1.04 Total: 2.73 kcal Atomic # 6 Polarization: -42.40 SS G_CDS: 4.18 Total: -38.23 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: -1.70 Total: -74.64 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -2.26 Total: 0.75 kcal Total: -66.59 3.28 -63.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307397359.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.280 kcal (2) G-P(sol) polarization free energy of solvation -66.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds