Wall clock time and date at job start Tue Mar 31 2020 07:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38708 * 119.70413 * 2 1 4 4 C 1.37735 * 119.97728 * 179.97438 * 3 2 1 5 5 C 1.39241 * 120.21059 * 359.97438 * 4 3 2 6 6 S 1.76192 * 131.17117 * 180.34938 * 5 4 3 7 7 C 1.75800 * 90.45759 * 180.02562 * 6 5 4 8 8 S 1.76199 * 124.82318 * 179.97438 * 7 6 5 9 9 C 1.81002 * 100.00182 * 359.69960 * 8 7 6 10 10 H 1.08998 * 109.47193 * 54.99436 * 9 8 7 11 11 C 1.52999 * 109.46727 * 294.99972 * 9 8 7 12 12 C 1.53001 * 109.47366 * 175.00140 * 9 8 7 13 13 C 1.50696 * 109.46858 * 295.00058 * 12 9 8 14 14 H 1.08009 * 120.00254 * 359.97438 * 13 12 9 15 15 C 1.37875 * 119.99906 * 180.02562 * 13 12 9 16 16 N 1.31512 * 120.00054 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 120.00161 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46894 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.46913 * 119.99319 * 17 15 13 20 20 H 1.48497 * 109.46971 * 239.99610 * 17 15 13 21 21 N 1.28977 * 110.35612 * 359.68654 * 7 6 5 22 22 C 1.34788 * 117.86667 * 0.23984 * 21 7 6 23 23 C 1.37206 * 119.70061 * 179.97438 * 2 1 3 24 24 H 1.09006 * 109.47116 * 90.00023 * 1 2 3 25 25 H 1.08998 * 109.47505 * 210.00145 * 1 2 3 26 26 H 1.08994 * 109.46930 * 330.00428 * 1 2 3 27 27 H 1.08001 * 120.01107 * 359.95347 * 3 2 1 28 28 H 1.08009 * 119.89397 * 180.02562 * 4 3 2 29 29 H 1.09008 * 109.47032 * 180.02562 * 11 9 8 30 30 H 1.09001 * 109.47448 * 300.00106 * 11 9 8 31 31 H 1.08999 * 109.47402 * 60.00019 * 11 9 8 32 32 H 1.08996 * 109.47132 * 54.99705 * 12 9 8 33 33 H 1.08994 * 109.46975 * 174.99726 * 12 9 8 34 34 H 0.96999 * 120.00237 * 180.02562 * 16 15 13 35 35 H 1.07995 * 119.78312 * 0.02976 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.2048 0.0000 4 6 3.5716 1.2114 0.0005 5 6 4.2780 0.0114 0.0016 6 16 6.0093 -0.3153 0.0106 7 6 5.6971 -2.0454 0.0039 8 16 6.9419 -3.2924 0.0068 9 6 8.4256 -2.2557 0.0083 10 1 8.3844 -1.5637 0.8495 11 6 8.4964 -1.4649 -1.2995 12 6 9.6666 -3.1413 0.1366 13 6 9.6578 -3.8268 1.4786 14 1 8.8483 -3.6483 2.1710 15 6 10.6837 -4.6811 1.8230 16 7 11.6697 -4.8981 0.9802 17 14 10.6733 -5.5303 3.4869 18 1 9.4633 -5.1207 4.2441 19 1 10.6605 -7.0023 3.2912 20 1 11.8880 -5.1426 4.2481 21 7 4.4275 -2.2721 0.0025 22 6 3.5977 -1.2099 0.0013 23 6 2.1868 -1.1918 0.0005 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.6497 2.1374 -0.0008 28 1 4.1055 2.1503 0.0010 29 1 9.3902 -0.8408 -1.2989 30 1 8.5375 -2.1568 -2.1408 31 1 7.6123 -0.8339 -1.3910 32 1 9.6611 -3.8912 -0.6544 33 1 10.5623 -2.5266 0.0484 34 1 12.3913 -5.4993 1.2224 35 1 1.6384 -2.1222 0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307397360.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:33 Heat of formation + Delta-G solvation = 33.595317 kcal Electronic energy + Delta-G solvation = -17780.018141 eV Core-core repulsion = 14994.847057 eV Total energy + Delta-G solvation = -2785.171084 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.060 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.13169 -36.97342 -34.85259 -32.50970 -32.21238 -30.22078 -27.79605 -27.06765 -24.86832 -23.49660 -22.63708 -21.50987 -20.06123 -18.48539 -16.72931 -16.52439 -16.32171 -15.52238 -14.98161 -14.76184 -14.58656 -14.28708 -13.87873 -13.65112 -13.32362 -12.86735 -12.53676 -12.33337 -12.07529 -11.88413 -11.76073 -11.69696 -11.30546 -11.03228 -10.81725 -10.74140 -10.58080 -9.93392 -9.87235 -9.63379 -9.34294 -9.21849 -9.01957 -8.48742 -7.99916 -7.15970 -6.13375 -4.16666 0.41013 1.06913 1.17009 1.53136 1.79290 2.31730 2.90834 3.27277 3.35497 3.40811 3.63356 4.28429 4.38158 4.59252 4.79124 4.99542 5.16955 5.24625 5.27881 5.36739 5.38643 5.42920 5.48325 5.72943 5.78007 5.84797 6.03706 6.14381 6.14749 6.35558 6.38766 6.46707 6.64260 7.35674 7.40751 7.65049 7.83113 8.16221 8.88177 9.49004 10.97465 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.030187 B = 0.003637 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.325849 B = 7695.781252 C = 8123.773850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.076 4.076 3 C -0.116 4.116 4 C -0.064 4.064 5 C -0.195 4.195 6 S 0.060 5.940 7 C 0.101 3.899 8 S 0.063 5.937 9 C -0.090 4.090 10 H 0.091 0.909 11 C -0.157 4.157 12 C 0.041 3.959 13 C -0.528 4.528 14 H 0.065 0.935 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.892 3.108 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.283 1.283 21 N -0.471 5.471 22 C 0.107 3.893 23 C -0.077 4.077 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.131 0.869 28 H 0.127 0.873 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.840 12.136 -3.810 21.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.079 4.079 3 C -0.138 4.138 4 C -0.086 4.086 5 C -0.316 4.316 6 S 0.312 5.688 7 C -0.291 4.291 8 S 0.299 5.701 9 C -0.220 4.220 10 H 0.109 0.891 11 C -0.217 4.217 12 C 0.003 3.997 13 C -0.566 4.566 14 H 0.083 0.917 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.720 3.280 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.210 1.210 21 N -0.189 5.189 22 C -0.016 4.016 23 C -0.099 4.099 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.149 0.851 28 H 0.145 0.855 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.915 10.787 -3.805 19.599 hybrid contribution -0.585 0.837 0.939 1.387 sum -16.500 11.623 -2.866 20.386 Atomic orbital electron populations 1.20780 0.90507 1.02989 1.02508 1.19623 0.96268 0.92423 0.99599 1.20911 0.93190 0.97723 1.01982 1.20270 0.93767 0.95218 0.99382 1.23847 0.97623 0.98550 1.11535 1.85240 1.02002 1.04636 1.76909 1.30060 0.99075 0.98825 1.01097 1.86446 0.92421 1.04567 1.86677 1.24075 0.97222 1.00361 1.00367 0.89080 1.22356 1.02039 1.00261 0.97032 1.19057 0.88423 0.93795 0.98470 1.21272 1.07817 1.26532 1.01019 0.91703 1.24973 0.95279 0.96443 0.97275 1.69950 1.10891 1.36642 1.35546 0.86512 0.78127 0.79438 0.83928 1.19427 1.20828 1.20959 1.66594 1.00705 1.31284 1.20340 1.19287 0.94811 0.85863 1.01620 1.20489 0.89957 0.98347 1.01068 0.90979 0.91322 0.91323 0.85148 0.85536 0.90867 0.91183 0.92728 0.95073 0.93901 0.92782 0.85049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.99 36.00 0.36 -0.43 16 2 C -0.08 -0.80 5.86 -104.83 -0.61 -1.42 16 3 C -0.12 -1.17 9.69 -39.59 -0.38 -1.56 16 4 C -0.06 -0.76 10.06 -39.39 -0.40 -1.16 16 5 C -0.20 -2.95 6.52 -38.62 -0.25 -3.20 16 6 S 0.06 0.95 18.91 -107.50 -2.03 -1.09 16 7 C 0.10 1.84 7.50 51.56 0.39 2.23 16 8 S 0.06 1.23 21.07 -107.50 -2.26 -1.04 16 9 C -0.09 -1.74 2.09 -26.73 -0.06 -1.79 16 10 H 0.09 1.75 7.73 -51.92 -0.40 1.35 16 11 C -0.16 -2.51 8.85 37.16 0.33 -2.18 16 12 C 0.04 0.97 4.44 -27.88 -0.12 0.85 16 13 C -0.53 -13.98 8.53 -34.44 -0.29 -14.27 16 14 H 0.06 1.71 7.60 -52.48 -0.40 1.31 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 17 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 N -0.47 -8.77 10.62 -10.59 -0.11 -8.89 16 22 C 0.11 1.76 6.94 -84.90 -0.59 1.17 16 23 C -0.08 -1.02 9.72 -38.87 -0.38 -1.39 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 26 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 27 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 28 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 29 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.81 4.69 -35.78 -0.17 0.65 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 319.76 15.07 4.82 4.82 Total: -1.00 -29.65 319.76 -10.31 -39.95 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -4.32 Total: -3.57 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -2.11 Total: -21.54 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.62 Total: -33.66 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -4.30 Total: -2.12 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.65 -10.31 -39.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307397360.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.549 kcal (2) G-P(sol) polarization free energy of solvation -29.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds