Wall clock time and date at job start Tue Mar 31 2020 07:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38708 * 119.70413 * 2 1 4 4 C 1.37735 * 119.97728 * 179.97438 * 3 2 1 5 5 C 1.39241 * 120.21059 * 359.97438 * 4 3 2 6 6 S 1.76192 * 131.17117 * 180.34938 * 5 4 3 7 7 C 1.75800 * 90.45759 * 180.02562 * 6 5 4 8 8 S 1.76199 * 124.82318 * 179.97438 * 7 6 5 9 9 C 1.81002 * 100.00182 * 359.69960 * 8 7 6 10 10 H 1.08998 * 109.47193 * 54.99436 * 9 8 7 11 11 C 1.52999 * 109.46727 * 294.99972 * 9 8 7 12 12 C 1.53001 * 109.47366 * 175.00140 * 9 8 7 13 13 C 1.50696 * 109.46858 * 295.00058 * 12 9 8 14 14 H 1.08009 * 120.00254 * 359.97438 * 13 12 9 15 15 C 1.37875 * 119.99906 * 180.02562 * 13 12 9 16 16 N 1.31512 * 120.00054 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 120.00161 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46894 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.46913 * 119.99319 * 17 15 13 20 20 H 1.48497 * 109.46971 * 239.99610 * 17 15 13 21 21 N 1.28977 * 110.35612 * 359.68654 * 7 6 5 22 22 C 1.34788 * 117.86667 * 0.23984 * 21 7 6 23 23 C 1.37206 * 119.70061 * 179.97438 * 2 1 3 24 24 H 1.09006 * 109.47116 * 90.00023 * 1 2 3 25 25 H 1.08998 * 109.47505 * 210.00145 * 1 2 3 26 26 H 1.08994 * 109.46930 * 330.00428 * 1 2 3 27 27 H 1.08001 * 120.01107 * 359.95347 * 3 2 1 28 28 H 1.08009 * 119.89397 * 180.02562 * 4 3 2 29 29 H 1.09008 * 109.47032 * 180.02562 * 11 9 8 30 30 H 1.09001 * 109.47448 * 300.00106 * 11 9 8 31 31 H 1.08999 * 109.47402 * 60.00019 * 11 9 8 32 32 H 1.08996 * 109.47132 * 54.99705 * 12 9 8 33 33 H 1.08994 * 109.46975 * 174.99726 * 12 9 8 34 34 H 0.96999 * 120.00237 * 180.02562 * 16 15 13 35 35 H 1.07995 * 119.78312 * 0.02976 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.2048 0.0000 4 6 3.5716 1.2114 0.0005 5 6 4.2780 0.0114 0.0016 6 16 6.0093 -0.3153 0.0106 7 6 5.6971 -2.0454 0.0039 8 16 6.9419 -3.2924 0.0068 9 6 8.4256 -2.2557 0.0083 10 1 8.3844 -1.5637 0.8495 11 6 8.4964 -1.4649 -1.2995 12 6 9.6666 -3.1413 0.1366 13 6 9.6578 -3.8268 1.4786 14 1 8.8483 -3.6483 2.1710 15 6 10.6837 -4.6811 1.8230 16 7 11.6697 -4.8981 0.9802 17 14 10.6733 -5.5303 3.4869 18 1 9.4633 -5.1207 4.2441 19 1 10.6605 -7.0023 3.2912 20 1 11.8880 -5.1426 4.2481 21 7 4.4275 -2.2721 0.0025 22 6 3.5977 -1.2099 0.0013 23 6 2.1868 -1.1918 0.0005 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.6497 2.1374 -0.0008 28 1 4.1055 2.1503 0.0010 29 1 9.3902 -0.8408 -1.2989 30 1 8.5375 -2.1568 -2.1408 31 1 7.6123 -0.8339 -1.3910 32 1 9.6611 -3.8912 -0.6544 33 1 10.5623 -2.5266 0.0484 34 1 12.3913 -5.4993 1.2224 35 1 1.6384 -2.1222 0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307397360.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:32 Heat of formation + Delta-G solvation = 17.933732 kcal Electronic energy + Delta-G solvation = -17780.697278 eV Core-core repulsion = 14994.847057 eV Total energy + Delta-G solvation = -2785.850221 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.060 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.21569 -38.04781 -36.59400 -34.19405 -33.32921 -31.27103 -29.57104 -27.89406 -26.10330 -25.34075 -23.60695 -22.90194 -21.38453 -19.62892 -18.56575 -18.00020 -17.42193 -16.86831 -16.52132 -16.12450 -15.92512 -15.33339 -14.96495 -14.86097 -14.48026 -14.22017 -13.90823 -13.48080 -13.34624 -13.14614 -12.99750 -12.78158 -12.66420 -12.61499 -12.50151 -12.41313 -11.86114 -11.64790 -11.36879 -11.25660 -10.87416 -10.64151 -10.53192 -10.15381 -9.09012 -8.58189 -8.22452 -6.31060 -0.74805 -0.09173 0.10947 0.12686 0.59105 1.19733 1.38834 1.41479 1.44675 1.53462 2.40378 2.62097 3.13324 3.20620 3.68310 3.90413 3.95596 4.00120 4.18242 4.28159 4.37513 4.42068 4.68410 4.77209 4.83868 4.88947 4.94422 5.09347 5.12210 5.14308 5.23636 5.36050 5.44872 5.49657 5.74933 5.77701 6.13311 6.41585 6.80902 7.37629 8.89037 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.030187 B = 0.003637 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.325849 B = 7695.781252 C = 8123.773850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.067 4.067 3 C -0.095 4.095 4 C -0.072 4.072 5 C -0.207 4.207 6 S 0.080 5.920 7 C 0.079 3.921 8 S 0.013 5.987 9 C -0.074 4.074 10 H 0.090 0.910 11 C -0.150 4.150 12 C 0.048 3.952 13 C -0.536 4.536 14 H 0.062 0.938 15 C 0.011 3.989 16 N -0.926 5.926 17 Si 0.953 3.047 18 H -0.266 1.266 19 H -0.280 1.280 20 H -0.276 1.276 21 N -0.488 5.488 22 C 0.065 3.935 23 C -0.091 4.091 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.175 0.825 28 H 0.153 0.847 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.009 0.991 33 H 0.029 0.971 34 H 0.265 0.735 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.606 14.777 -3.405 24.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.070 4.070 3 C -0.117 4.117 4 C -0.095 4.095 5 C -0.327 4.327 6 S 0.332 5.668 7 C -0.313 4.313 8 S 0.247 5.753 9 C -0.204 4.204 10 H 0.108 0.892 11 C -0.210 4.210 12 C 0.009 3.991 13 C -0.575 4.575 14 H 0.080 0.920 15 C -0.188 4.188 16 N -0.567 5.567 17 Si 0.778 3.222 18 H -0.190 1.190 19 H -0.206 1.206 20 H -0.202 1.202 21 N -0.206 5.206 22 C -0.056 4.056 23 C -0.113 4.113 24 H 0.105 0.895 25 H 0.090 0.910 26 H 0.110 0.890 27 H 0.192 0.808 28 H 0.170 0.830 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.027 0.973 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.702 13.443 -3.398 23.282 hybrid contribution -0.031 0.194 0.785 0.809 sum -18.733 13.637 -2.613 23.318 Atomic orbital electron populations 1.20885 0.87584 1.04387 1.03810 1.20119 0.98276 0.91564 0.97032 1.21491 0.92565 0.99244 0.98410 1.20720 0.94789 0.94979 0.99001 1.24113 0.97006 0.99443 1.12134 1.84925 1.03099 1.02144 1.76639 1.29550 0.98606 0.99636 1.03462 1.86399 0.93831 1.06492 1.88542 1.23799 0.95064 0.99372 1.02157 0.89187 1.22311 1.03351 1.00176 0.95145 1.18838 0.90120 0.93569 0.96551 1.21602 1.07417 1.26449 1.02005 0.92000 1.25765 0.95110 0.97301 1.00637 1.70051 1.11641 1.37639 1.37321 0.85564 0.78298 0.78307 0.79984 1.19039 1.20579 1.20195 1.66518 1.01273 1.33355 1.19481 1.19632 0.95939 0.85789 1.04278 1.20787 0.88889 1.00014 1.01592 0.89539 0.90969 0.89003 0.80808 0.82966 0.89426 0.91115 0.91385 0.97282 0.95268 0.92651 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.99 71.23 0.71 -0.35 16 2 C -0.07 -1.17 5.86 -20.00 -0.12 -1.29 16 3 C -0.10 -1.47 9.69 22.26 0.22 -1.25 16 4 C -0.07 -1.47 10.06 22.39 0.23 -1.25 16 5 C -0.21 -5.96 6.52 22.89 0.15 -5.81 16 6 S 0.08 2.48 18.91 -56.49 -1.07 1.41 16 7 C 0.08 2.97 7.50 130.66 0.98 3.95 16 8 S 0.01 0.52 21.07 -56.49 -1.19 -0.67 16 9 C -0.07 -2.94 2.09 30.59 0.06 -2.88 16 10 H 0.09 3.54 7.73 -2.40 -0.02 3.52 16 11 C -0.15 -4.83 8.85 71.98 0.64 -4.19 16 12 C 0.05 2.35 4.44 29.85 0.13 2.48 16 13 C -0.54 -29.24 8.53 25.60 0.22 -29.02 16 14 H 0.06 3.34 7.60 -2.91 -0.02 3.32 16 15 C 0.01 0.59 5.46 84.65 0.46 1.05 16 16 N -0.93 -54.33 13.29 21.45 0.28 -54.04 16 17 Si 0.95 44.05 29.54 68.60 2.03 46.07 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 N -0.49 -18.61 10.62 -187.42 -1.99 -20.60 16 22 C 0.07 2.11 6.94 39.77 0.28 2.38 16 23 C -0.09 -2.27 9.72 22.73 0.22 -2.05 16 24 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 25 H 0.07 0.69 8.08 -2.39 -0.02 0.67 16 26 H 0.09 0.52 8.08 -2.39 -0.02 0.50 16 27 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 28 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 29 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.07 2.01 4.69 -12.66 -0.06 1.95 16 32 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 35 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -66.59 319.76 3.28 -63.31 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: 1.04 Total: 2.73 kcal Atomic # 6 Polarization: -42.38 SS G_CDS: 4.18 Total: -38.21 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -1.70 Total: -74.64 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -2.26 Total: 0.74 kcal Total: -66.59 3.28 -63.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307397360.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.243 kcal (2) G-P(sol) polarization free energy of solvation -66.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds