Wall clock time and date at job start Tue Mar 31 2020 06:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.31046 * 122.31087 * 2 1 4 4 S 1.75592 * 109.49481 * 180.02562 * 3 2 1 5 5 C 1.71460 * 91.30589 * 0.02562 * 4 3 2 6 6 N 1.33682 * 128.65188 * 179.97438 * 5 4 3 7 7 C 1.31610 * 122.38799 * 180.02562 * 6 5 4 8 8 C 1.40026 * 119.28495 * 0.02562 * 7 6 5 9 9 C 1.46658 * 120.86482 * 180.02562 * 8 7 6 10 10 O 1.21727 * 120.00075 * 268.64657 * 9 8 7 11 11 N 1.34778 * 119.99822 * 88.64816 * 9 8 7 12 12 C 1.46507 * 120.00013 * 33.58369 * 11 9 8 13 13 C 1.36957 * 120.00202 * 213.57717 * 11 9 8 14 14 H 1.08001 * 119.99219 * 51.88865 * 13 11 9 15 15 C 1.38956 * 120.00305 * 231.89009 * 13 11 9 16 16 N 1.31431 * 120.00360 * 38.63646 * 15 13 11 17 17 Si 1.86801 * 120.00111 * 218.63520 * 15 13 11 18 18 H 1.48495 * 109.47312 * 89.99753 * 17 15 13 19 19 H 1.48501 * 109.46964 * 210.00065 * 17 15 13 20 20 H 1.48502 * 109.46832 * 329.99753 * 17 15 13 21 21 C 1.41354 * 118.26511 * 0.27427 * 8 7 6 22 22 O 1.21873 * 120.30595 * 179.69901 * 21 8 7 23 23 N 1.35127 * 109.94380 * 359.97438 * 5 4 3 24 24 H 1.09000 * 109.47064 * 269.97444 * 1 2 3 25 25 H 1.09002 * 109.47322 * 29.97402 * 1 2 3 26 26 H 1.08999 * 109.47065 * 149.97299 * 1 2 3 27 27 H 1.08000 * 125.25354 * 0.02562 * 3 2 1 28 28 H 1.08005 * 120.35535 * 179.97438 * 7 6 5 29 29 H 1.09004 * 109.47145 * 127.16564 * 12 11 9 30 30 H 1.09003 * 109.46952 * 247.16559 * 12 11 9 31 31 H 1.08999 * 109.47201 * 7.16571 * 12 11 9 32 32 H 0.96994 * 120.00319 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2074 1.1075 0.0000 4 16 3.9196 0.7180 -0.0007 5 6 3.5775 -0.9621 -0.0018 6 7 4.4339 -1.9886 -0.0032 7 6 4.0321 -3.2418 -0.0043 8 6 2.6600 -3.5213 -0.0047 9 6 2.1740 -4.9050 -0.0054 10 8 1.9489 -5.4705 -1.0596 11 7 1.9765 -5.5504 1.1612 12 6 1.5222 -4.8094 2.3406 13 6 2.2003 -6.8990 1.2441 14 1 3.1404 -7.3119 0.9091 15 6 1.2180 -7.7360 1.7592 16 7 -0.0469 -7.5151 1.4788 17 14 1.6951 -9.1754 2.8500 18 1 1.7147 -8.7364 4.2684 19 1 0.7064 -10.2710 2.6845 20 1 3.0436 -9.6632 2.4641 21 6 1.7557 -2.4349 -0.0097 22 8 0.5535 -2.6354 -0.0157 23 7 2.2408 -1.1603 -0.0010 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3633 -0.8897 -0.5142 27 1 1.7953 2.1058 0.0004 28 1 4.7530 -4.0461 -0.0059 29 1 0.6371 -5.2925 2.7545 30 1 2.3139 -4.7982 3.0897 31 1 1.2777 -3.7863 2.0550 32 1 -0.7327 -8.0991 1.8387 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319969900.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:38 Heat of formation + Delta-G solvation = 30.554146 kcal Electronic energy + Delta-G solvation = -21246.752374 eV Core-core repulsion = 17915.156200 eV Total energy + Delta-G solvation = -3331.596173 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.44358 -38.66756 -37.51634 -37.01893 -34.40705 -32.40825 -31.81898 -30.66481 -28.80224 -26.31734 -25.85647 -24.64257 -23.75551 -21.62475 -19.54502 -19.04081 -18.36181 -17.22732 -16.83317 -16.76273 -15.79677 -15.19712 -14.91569 -14.53659 -14.25664 -13.90679 -13.63825 -13.49020 -13.40341 -13.30622 -12.93514 -12.49753 -11.93498 -11.74715 -11.52927 -11.44127 -11.16847 -10.97056 -10.56036 -10.33555 -10.32240 -10.28517 -9.84674 -9.41059 -8.83577 -8.40372 -7.52704 -7.21841 -6.26930 -3.93840 0.07317 0.50811 1.19352 1.22124 1.91773 2.08866 3.20478 3.31216 3.34840 3.55377 3.72180 4.11471 4.15374 4.27246 4.67069 4.84649 4.88373 4.96901 5.05978 5.20161 5.37080 5.61729 5.80494 5.92724 5.97546 6.25530 6.30185 6.44649 6.55142 6.89563 7.52707 7.62266 7.81695 8.40127 8.63591 9.27910 9.39451 10.06271 10.70296 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.029692 B = 0.004644 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.789955 B = 6027.371375 C = 6432.070437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.108 3.892 3 C -0.263 4.263 4 S 0.239 5.761 5 C 0.265 3.735 6 N -0.512 5.512 7 C 0.201 3.799 8 C -0.273 4.273 9 C 0.544 3.456 10 O -0.541 6.541 11 N -0.453 5.453 12 C 0.100 3.900 13 C -0.346 4.346 14 H 0.084 0.916 15 C 0.064 3.936 16 N -0.817 5.817 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.266 1.266 21 C 0.535 3.465 22 O -0.495 6.495 23 N -0.456 5.456 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.104 0.896 27 H 0.199 0.801 28 H 0.182 0.818 29 H 0.058 0.942 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.706 20.289 1.140 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.001 4.001 3 C -0.399 4.399 4 S 0.491 5.509 5 C -0.100 4.100 6 N -0.240 5.240 7 C 0.052 3.948 8 C -0.289 4.289 9 C 0.330 3.670 10 O -0.420 6.420 11 N -0.175 5.175 12 C -0.044 4.044 13 C -0.472 4.472 14 H 0.101 0.899 15 C -0.148 4.148 16 N -0.448 5.448 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.190 1.190 21 C 0.336 3.664 22 O -0.370 6.370 23 N -0.167 5.167 24 H 0.106 0.894 25 H 0.104 0.896 26 H 0.122 0.878 27 H 0.216 0.784 28 H 0.199 0.801 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.555 20.553 0.621 21.582 hybrid contribution -1.895 -1.656 0.655 2.601 sum 4.660 18.897 1.276 19.505 Atomic orbital electron populations 1.20990 0.85224 1.05722 1.04753 1.19829 0.97391 0.83595 0.99292 1.24962 0.96450 1.02586 1.15947 1.84037 1.02780 0.87206 1.76855 1.25596 0.82254 1.04092 0.98019 1.68117 1.31711 0.98495 1.25663 1.23016 0.93654 0.91747 0.86366 1.22259 0.93969 0.96471 1.16185 1.17325 0.81681 0.82195 0.85797 1.90672 1.51578 1.67618 1.32110 1.42887 1.61841 1.07076 1.05696 1.21492 0.98990 0.94488 0.89412 1.19027 1.00072 0.81165 1.46914 0.89864 1.25550 0.94434 0.97651 0.97203 1.70381 1.01085 1.38196 1.35137 0.86469 0.79207 0.81095 0.81138 1.20156 1.21168 1.19043 1.17445 0.90045 0.79646 0.79217 1.90915 1.14701 1.81861 1.49483 1.45342 1.06941 1.09319 1.55131 0.89365 0.89605 0.87756 0.78381 0.80074 0.92315 0.94749 0.94312 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.44 36.00 0.34 -0.81 16 2 C 0.11 1.27 6.62 -81.88 -0.54 0.73 16 3 C -0.26 -2.10 10.84 29.00 0.31 -1.78 16 4 S 0.24 2.13 23.15 -107.50 -2.49 -0.36 16 5 C 0.26 3.78 8.07 -87.58 -0.71 3.07 16 6 N -0.51 -8.12 10.39 -13.56 -0.14 -8.26 16 7 C 0.20 3.58 11.07 -16.98 -0.19 3.39 16 8 C -0.27 -5.96 4.71 -104.64 -0.49 -6.45 16 9 C 0.54 14.77 6.18 -12.86 -0.08 14.69 16 10 O -0.54 -16.98 17.38 5.17 0.09 -16.89 16 11 N -0.45 -12.36 2.86 -123.68 -0.35 -12.71 16 12 C 0.10 2.38 10.12 59.85 0.61 2.99 16 13 C -0.35 -9.92 8.68 -15.00 -0.13 -10.05 16 14 H 0.08 2.38 8.05 -52.49 -0.42 1.95 16 15 C 0.06 1.78 4.71 -17.46 -0.08 1.70 16 16 N -0.82 -24.21 13.55 55.50 0.75 -23.46 16 17 Si 0.90 20.58 29.68 -169.99 -5.05 15.54 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 21 C 0.54 11.01 6.62 -14.34 -0.09 10.91 16 22 O -0.49 -11.46 13.72 5.03 0.07 -11.39 16 23 N -0.46 -7.21 2.82 -62.85 -0.18 -7.38 16 24 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.09 0.60 8.11 -51.93 -0.42 0.18 16 26 H 0.10 1.50 5.93 -51.93 -0.31 1.19 16 27 H 0.20 0.78 8.06 -52.49 -0.42 0.35 16 28 H 0.18 2.86 8.06 -52.48 -0.42 2.43 16 29 H 0.06 1.48 7.44 -51.93 -0.39 1.09 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.04 0.87 5.72 -51.93 -0.30 0.57 16 32 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 297.90 15.07 4.49 4.49 Total: -1.00 -37.55 297.90 -6.52 -44.07 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: -2.66 Total: -2.02 kcal Atomic # 6 Polarization: 19.44 SS G_CDS: -1.06 Total: 18.39 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: 0.08 Total: -51.82 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: 0.16 Total: -28.29 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.05 Total: 15.54 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.49 Total: -0.36 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -37.55 -6.52 -44.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319969900.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.625 kcal (2) G-P(sol) polarization free energy of solvation -37.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds