Wall clock time and date at job start Tue Mar 31 2020 06:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.31046 * 122.31087 * 2 1 4 4 S 1.75592 * 109.49481 * 180.02562 * 3 2 1 5 5 C 1.71460 * 91.30589 * 0.02562 * 4 3 2 6 6 N 1.33682 * 128.65188 * 179.97438 * 5 4 3 7 7 C 1.31610 * 122.38799 * 180.02562 * 6 5 4 8 8 C 1.40026 * 119.28495 * 0.02562 * 7 6 5 9 9 C 1.46658 * 120.86482 * 180.02562 * 8 7 6 10 10 O 1.21727 * 120.00075 * 268.64657 * 9 8 7 11 11 N 1.34778 * 119.99822 * 88.64816 * 9 8 7 12 12 C 1.46507 * 120.00013 * 33.58369 * 11 9 8 13 13 C 1.36957 * 120.00202 * 213.57717 * 11 9 8 14 14 H 1.08001 * 119.99219 * 51.88865 * 13 11 9 15 15 C 1.38956 * 120.00305 * 231.89009 * 13 11 9 16 16 N 1.31431 * 120.00360 * 38.63646 * 15 13 11 17 17 Si 1.86801 * 120.00111 * 218.63520 * 15 13 11 18 18 H 1.48495 * 109.47312 * 89.99753 * 17 15 13 19 19 H 1.48501 * 109.46964 * 210.00065 * 17 15 13 20 20 H 1.48502 * 109.46832 * 329.99753 * 17 15 13 21 21 C 1.41354 * 118.26511 * 0.27427 * 8 7 6 22 22 O 1.21873 * 120.30595 * 179.69901 * 21 8 7 23 23 N 1.35127 * 109.94380 * 359.97438 * 5 4 3 24 24 H 1.09000 * 109.47064 * 269.97444 * 1 2 3 25 25 H 1.09002 * 109.47322 * 29.97402 * 1 2 3 26 26 H 1.08999 * 109.47065 * 149.97299 * 1 2 3 27 27 H 1.08000 * 125.25354 * 0.02562 * 3 2 1 28 28 H 1.08005 * 120.35535 * 179.97438 * 7 6 5 29 29 H 1.09004 * 109.47145 * 127.16564 * 12 11 9 30 30 H 1.09003 * 109.46952 * 247.16559 * 12 11 9 31 31 H 1.08999 * 109.47201 * 7.16571 * 12 11 9 32 32 H 0.96994 * 120.00319 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2074 1.1075 0.0000 4 16 3.9196 0.7180 -0.0007 5 6 3.5775 -0.9621 -0.0018 6 7 4.4339 -1.9886 -0.0032 7 6 4.0321 -3.2418 -0.0043 8 6 2.6600 -3.5213 -0.0047 9 6 2.1740 -4.9050 -0.0054 10 8 1.9489 -5.4705 -1.0596 11 7 1.9765 -5.5504 1.1612 12 6 1.5222 -4.8094 2.3406 13 6 2.2003 -6.8990 1.2441 14 1 3.1404 -7.3119 0.9091 15 6 1.2180 -7.7360 1.7592 16 7 -0.0469 -7.5151 1.4788 17 14 1.6951 -9.1754 2.8500 18 1 1.7147 -8.7364 4.2684 19 1 0.7064 -10.2710 2.6845 20 1 3.0436 -9.6632 2.4641 21 6 1.7557 -2.4349 -0.0097 22 8 0.5535 -2.6354 -0.0157 23 7 2.2408 -1.1603 -0.0010 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3633 -0.8897 -0.5142 27 1 1.7953 2.1058 0.0004 28 1 4.7530 -4.0461 -0.0059 29 1 0.6371 -5.2925 2.7545 30 1 2.3139 -4.7982 3.0897 31 1 1.2777 -3.7863 2.0550 32 1 -0.7327 -8.0991 1.8387 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319969900.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:37 Heat of formation + Delta-G solvation = 2.379739 kcal Electronic energy + Delta-G solvation = -21247.974108 eV Core-core repulsion = 17915.156200 eV Total energy + Delta-G solvation = -3332.817907 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.67892 -40.43657 -38.98980 -38.37912 -36.52714 -33.96050 -33.43058 -32.13883 -29.76912 -28.25162 -27.35383 -26.32300 -25.20731 -22.92676 -21.19823 -20.17068 -19.70881 -19.02413 -18.33480 -18.08965 -17.46094 -17.16544 -16.43421 -16.15035 -15.60421 -15.39539 -15.02546 -14.92801 -14.52594 -14.42494 -14.33607 -13.86710 -13.74671 -13.46086 -13.17195 -13.02375 -12.84583 -12.54300 -12.36387 -12.10592 -11.77076 -11.31375 -11.22796 -10.99696 -10.54563 -10.43415 -9.34972 -8.71572 -8.36462 -6.14992 -1.15232 -0.49243 0.12630 0.33034 0.69294 0.90194 1.38667 1.42005 1.57203 1.83691 2.15165 2.31727 2.79210 2.88882 2.93222 3.25275 3.75977 3.84480 4.10068 4.12248 4.31551 4.39916 4.52554 4.59064 4.69039 4.78192 4.85058 4.91415 5.05035 5.35513 5.46633 6.20188 6.25403 6.43588 6.58491 7.18986 7.32558 7.98729 8.61522 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.029692 B = 0.004644 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.789955 B = 6027.371375 C = 6432.070437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.054 3.946 3 C -0.213 4.213 4 S 0.365 5.635 5 C 0.240 3.760 6 N -0.526 5.526 7 C 0.245 3.755 8 C -0.346 4.346 9 C 0.544 3.456 10 O -0.607 6.607 11 N -0.467 5.467 12 C 0.112 3.888 13 C -0.378 4.378 14 H 0.074 0.926 15 C 0.017 3.983 16 N -0.869 5.869 17 Si 0.982 3.018 18 H -0.258 1.258 19 H -0.283 1.283 20 H -0.257 1.257 21 C 0.534 3.466 22 O -0.547 6.547 23 N -0.453 5.453 24 H 0.088 0.912 25 H 0.129 0.871 26 H 0.057 0.943 27 H 0.257 0.743 28 H 0.194 0.806 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.909 24.543 2.492 25.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.053 4.053 3 C -0.349 4.349 4 S 0.619 5.381 5 C -0.120 4.120 6 N -0.255 5.255 7 C 0.091 3.909 8 C -0.363 4.363 9 C 0.333 3.667 10 O -0.491 6.491 11 N -0.189 5.189 12 C -0.031 4.031 13 C -0.504 4.504 14 H 0.092 0.908 15 C -0.191 4.191 16 N -0.501 5.501 17 Si 0.803 3.197 18 H -0.183 1.183 19 H -0.209 1.209 20 H -0.181 1.181 21 C 0.337 3.663 22 O -0.426 6.426 23 N -0.161 5.161 24 H 0.106 0.894 25 H 0.147 0.853 26 H 0.076 0.924 27 H 0.273 0.727 28 H 0.210 0.790 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.777 24.949 2.006 26.524 hybrid contribution -2.413 -2.458 0.154 3.448 sum 6.364 22.491 2.160 23.473 Atomic orbital electron populations 1.20938 0.84977 1.05489 1.04775 1.20211 0.98174 0.83130 1.03745 1.25814 0.96182 1.03535 1.09364 1.83943 1.01780 0.81116 1.71217 1.26901 0.81774 1.06942 0.96421 1.68246 1.31479 0.97805 1.27949 1.23134 0.92069 0.93269 0.82431 1.21480 0.95795 0.94038 1.24961 1.18012 0.79861 0.84153 0.84682 1.90581 1.54248 1.70203 1.34110 1.43212 1.61668 1.07210 1.06769 1.21392 0.98840 0.94078 0.88805 1.19295 1.00165 0.82537 1.48445 0.90843 1.26660 0.93890 1.00953 0.97626 1.70461 1.02631 1.40412 1.36635 0.85173 0.78884 0.76595 0.79026 1.18259 1.20880 1.18103 1.17129 0.89082 0.81062 0.79060 1.90876 1.16242 1.83086 1.52429 1.45188 1.08021 1.09178 1.53718 0.89385 0.85265 0.92409 0.72729 0.78951 0.94475 0.91797 0.93719 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.08 9.44 71.24 0.67 -1.41 16 2 C 0.05 1.12 6.62 41.62 0.28 1.40 16 3 C -0.21 -1.99 10.84 67.73 0.73 -1.25 16 4 S 0.37 4.19 23.15 -56.49 -1.31 2.89 16 5 C 0.24 6.20 8.07 179.28 1.45 7.65 16 6 N -0.53 -15.92 10.39 -196.81 -2.04 -17.96 16 7 C 0.25 8.96 11.07 85.16 0.94 9.91 16 8 C -0.35 -16.10 4.71 -19.88 -0.09 -16.19 16 9 C 0.54 31.96 6.18 86.44 0.53 32.49 16 10 O -0.61 -41.67 17.38 -4.43 -0.08 -41.74 16 11 N -0.47 -27.20 2.86 -663.42 -1.90 -29.10 16 12 C 0.11 5.62 10.12 127.77 1.29 6.91 16 13 C -0.38 -22.93 8.68 84.06 0.73 -22.20 16 14 H 0.07 4.46 8.05 -2.91 -0.02 4.43 16 15 C 0.02 0.98 4.71 84.92 0.40 1.37 16 16 N -0.87 -54.19 13.55 21.67 0.29 -53.90 16 17 Si 0.98 43.55 29.68 68.60 2.04 45.59 16 18 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 20 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 21 C 0.53 23.19 6.62 84.75 0.56 23.75 16 22 O -0.55 -27.60 13.72 -4.91 -0.07 -27.67 16 23 N -0.45 -13.92 2.82 -469.99 -1.32 -15.25 16 24 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.13 1.34 8.11 -2.39 -0.02 1.32 16 26 H 0.06 1.77 5.93 -2.39 -0.01 1.76 16 27 H 0.26 -0.43 8.06 -2.91 -0.02 -0.46 16 28 H 0.19 6.27 8.06 -2.91 -0.02 6.25 16 29 H 0.04 1.97 7.44 -2.38 -0.02 1.95 16 30 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.04 2.14 5.72 -2.39 -0.01 2.13 16 32 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -94.21 297.90 4.28 -89.93 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: 1.18 Total: 4.78 kcal Atomic # 6 Polarization: 34.95 SS G_CDS: 7.50 Total: 42.44 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -4.97 Total: -116.21 kcal Atomic # 8 Polarization: -69.27 SS G_CDS: -0.14 Total: -69.41 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.04 Total: 45.59 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -1.31 Total: 2.89 kcal Total: -94.21 4.28 -89.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319969900.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.309 kcal (2) G-P(sol) polarization free energy of solvation -94.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds