Wall clock time and date at job start Tue Mar 31 2020 06:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46508 * 119.99477 * 2 1 4 4 C 1.50698 * 109.47333 * 269.99977 * 3 2 1 5 5 N 1.30918 * 118.72383 * 90.00203 * 4 3 2 6 6 C 1.35200 * 121.08481 * 180.02562 * 5 4 3 7 7 C 1.40379 * 129.73615 * 180.02562 * 6 5 4 8 8 C 1.32364 * 115.77912 * 179.97438 * 7 6 5 9 9 S 1.75566 * 110.77997 * 359.97438 * 8 7 6 10 10 C 1.39791 * 117.77638 * 359.97438 * 6 5 4 11 11 C 1.40189 * 118.86892 * 0.03323 * 10 6 5 12 12 O 1.35529 * 120.54767 * 179.97438 * 11 10 6 13 13 N 1.32129 * 118.72364 * 270.02724 * 4 3 2 14 14 C 1.34770 * 120.00400 * 180.02562 * 2 1 3 15 15 O 1.21691 * 120.00368 * 179.97438 * 14 2 1 16 16 C 1.46378 * 120.00157 * 0.02562 * 14 2 1 17 17 H 1.08003 * 119.99389 * 359.97438 * 16 14 2 18 18 C 1.40039 * 120.00240 * 179.97438 * 16 14 2 19 19 N 1.30675 * 120.00450 * 359.97438 * 18 16 14 20 20 Si 1.86809 * 120.00087 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.46855 * 89.99902 * 20 18 16 22 22 H 1.48502 * 109.46857 * 210.00083 * 20 18 16 23 23 H 1.48498 * 109.46911 * 329.99953 * 20 18 16 24 24 H 1.09000 * 109.46839 * 89.99979 * 1 2 3 25 25 H 1.09005 * 109.46997 * 209.99738 * 1 2 3 26 26 H 1.08995 * 109.47205 * 329.99795 * 1 2 3 27 27 H 1.09008 * 109.46690 * 149.99721 * 3 2 1 28 28 H 1.09000 * 109.47067 * 30.00269 * 3 2 1 29 29 H 1.07997 * 122.11223 * 0.22969 * 7 6 5 30 30 H 1.07999 * 124.61043 * 179.97438 * 8 7 6 31 31 H 0.96701 * 113.99698 * 90.00157 * 12 11 10 32 32 H 0.96997 * 120.00505 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.4486 1.7040 -1.4208 5 7 1.5591 2.4596 -2.0140 6 6 1.7358 2.8770 -3.2877 7 6 0.9119 3.6811 -4.0910 8 6 1.3583 3.9223 -5.3135 9 16 2.9060 3.1367 -5.5777 10 6 2.8998 2.4753 -3.9494 11 6 3.8202 1.6659 -3.2689 12 8 4.9595 1.2563 -3.8779 13 7 3.5577 1.3076 -2.0196 14 6 2.1389 -1.1671 -0.0005 15 8 3.3558 -1.1671 -0.0010 16 6 1.4072 -2.4348 -0.0017 17 1 0.3271 -2.4348 -0.0017 18 6 2.1074 -3.6476 -0.0027 19 7 3.4142 -3.6476 -0.0032 20 14 1.1735 -5.2654 -0.0035 21 1 0.9255 -5.6931 -1.4037 22 1 1.9764 -6.3007 0.6956 23 1 -0.1238 -5.0884 0.6972 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 3.1499 1.1385 0.5139 28 1 1.6083 2.0284 0.5139 29 1 -0.0251 4.0812 -3.7327 30 1 0.8408 4.5209 -6.0485 31 1 5.7067 1.8586 -3.7604 32 1 3.8992 -4.4876 -0.0036 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320343952.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:45 Heat of formation + Delta-G solvation = -20.688811 kcal Electronic energy + Delta-G solvation = -20766.691960 eV Core-core repulsion = 17432.873725 eV Total energy + Delta-G solvation = -3333.818235 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.36476 -39.68577 -38.97996 -37.49310 -35.72608 -34.58134 -33.59083 -31.92507 -29.62925 -27.95354 -26.68387 -25.63710 -24.54794 -22.28746 -21.07474 -20.02295 -19.74310 -18.41270 -18.24246 -17.64696 -17.23218 -16.63310 -16.18846 -15.98753 -15.90823 -15.30756 -15.09758 -14.54767 -14.29870 -13.89768 -13.47592 -13.36805 -13.17328 -13.07405 -13.01102 -12.85007 -12.72728 -12.33443 -12.14395 -12.01625 -11.75682 -11.65293 -10.93424 -10.54356 -10.37389 -9.75674 -9.25479 -9.05234 -8.27612 -6.84476 -0.74091 -0.49682 0.22304 0.76020 1.08906 1.37437 1.39433 1.54500 2.16395 2.20219 2.35669 2.48785 2.72066 3.01936 3.21300 3.53694 3.63873 3.93655 4.05041 4.38039 4.51412 4.58954 4.64976 4.78959 4.86538 4.95117 5.00209 5.14556 5.36177 5.70336 5.74427 6.10364 6.30617 6.31661 6.87552 6.96993 7.38353 8.48724 8.68448 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.021530 B = 0.004524 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.196708 B = 6188.355670 C = 6510.072107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.642 5.642 3 C 0.194 3.806 4 C 0.329 3.671 5 N -0.498 5.498 6 C 0.161 3.839 7 C -0.143 4.143 8 C -0.125 4.125 9 S 0.188 5.812 10 C -0.311 4.311 11 C 0.400 3.600 12 O -0.478 6.478 13 N -0.543 5.543 14 C 0.536 3.464 15 O -0.606 6.606 16 C -0.570 4.570 17 H 0.091 0.909 18 C 0.028 3.972 19 N -0.820 5.820 20 Si 0.994 3.006 21 H -0.267 1.267 22 H -0.271 1.271 23 H -0.244 1.244 24 H 0.026 0.974 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.124 0.876 29 H 0.181 0.819 30 H 0.231 0.769 31 H 0.427 0.573 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.181 16.867 -11.321 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.379 5.379 3 C 0.067 3.933 4 C 0.056 3.944 5 N -0.215 5.215 6 C 0.019 3.981 7 C -0.173 4.173 8 C -0.263 4.263 9 S 0.449 5.551 10 C -0.432 4.432 11 C 0.201 3.799 12 O -0.289 6.289 13 N -0.269 5.269 14 C 0.342 3.658 15 O -0.490 6.490 16 C -0.607 4.607 17 H 0.109 0.891 18 C -0.187 4.187 19 N -0.450 5.450 20 Si 0.814 3.186 21 H -0.192 1.192 22 H -0.196 1.196 23 H -0.167 1.167 24 H 0.044 0.956 25 H 0.089 0.911 26 H 0.105 0.895 27 H 0.092 0.908 28 H 0.142 0.858 29 H 0.198 0.802 30 H 0.248 0.752 31 H 0.290 0.710 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.890 16.001 -11.798 20.472 hybrid contribution -0.186 -0.406 0.592 0.741 sum -5.076 15.595 -11.206 19.863 Atomic orbital electron populations 1.21553 0.79011 1.03066 1.00048 1.47942 1.07111 1.04048 1.78795 1.19896 0.99049 0.87513 0.86813 1.23740 0.83739 0.88369 0.98564 1.68313 1.29632 1.14000 1.09588 1.19973 0.91913 0.95504 0.90748 1.19792 1.02788 1.01429 0.93296 1.26204 0.98168 1.01932 1.00046 1.84055 1.19628 1.46946 1.04491 1.24777 1.03780 1.09551 1.05071 1.18973 0.87945 0.86522 0.86500 1.84706 1.20205 1.52634 1.71333 1.68143 1.24776 1.23105 1.10831 1.18727 0.86934 0.83925 0.76257 1.90597 1.15665 1.86985 1.55763 1.21528 0.94799 0.89813 1.54529 0.89078 1.26989 0.95505 1.04898 0.91313 1.70210 1.09501 1.28758 1.36493 0.85072 0.79077 0.75286 0.79198 1.19169 1.19600 1.16715 0.95566 0.91102 0.89550 0.90791 0.85833 0.80221 0.75236 0.71022 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.06 10.19 127.77 1.30 5.36 16 2 N -0.64 -31.18 2.86 -856.25 -2.45 -33.63 16 3 C 0.19 8.32 5.86 85.63 0.50 8.83 16 4 C 0.33 14.17 7.20 138.91 1.00 15.17 16 5 N -0.50 -18.47 10.39 -182.66 -1.90 -20.36 16 6 C 0.16 5.03 7.02 39.52 0.28 5.31 16 7 C -0.14 -2.87 10.16 21.70 0.22 -2.65 16 8 C -0.13 -1.69 11.09 66.73 0.74 -0.95 16 9 S 0.19 3.60 23.29 -56.49 -1.32 2.28 16 10 C -0.31 -9.70 6.50 23.12 0.15 -9.55 16 11 C 0.40 15.29 7.86 85.05 0.67 15.96 16 12 O -0.48 -15.76 13.58 -88.33 -1.20 -16.96 16 13 N -0.54 -25.23 10.35 -300.65 -3.11 -28.35 16 14 C 0.54 32.63 7.61 86.36 0.66 33.29 16 15 O -0.61 -42.08 14.60 -4.32 -0.06 -42.14 16 16 C -0.57 -33.58 8.74 24.83 0.22 -33.36 16 17 H 0.09 4.81 6.00 -2.91 -0.02 4.79 16 18 C 0.03 1.62 5.50 85.30 0.47 2.08 16 19 N -0.82 -52.21 11.83 21.83 0.26 -51.96 16 20 Si 0.99 42.54 29.56 68.60 2.03 44.57 16 21 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.24 -9.55 7.11 99.48 0.71 -8.84 16 24 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.07 2.74 6.10 -2.38 -0.01 2.72 16 26 H 0.09 2.58 7.89 -2.39 -0.02 2.56 16 27 H 0.07 3.54 7.42 -2.38 -0.02 3.53 16 28 H 0.12 4.17 7.89 -2.39 -0.02 4.15 16 29 H 0.18 2.71 8.06 -2.91 -0.02 2.69 16 30 H 0.23 0.75 8.06 -2.91 -0.02 0.73 16 31 H 0.43 8.69 9.06 -74.06 -0.67 8.02 16 32 H 0.27 15.78 8.29 -92.71 -0.77 15.01 16 Total: -1.00 -90.50 302.41 -1.01 -91.51 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.53 Total: 15.55 kcal Atomic # 6 Polarization: 33.28 SS G_CDS: 6.20 Total: 39.48 kcal Atomic # 7 Polarization: -127.10 SS G_CDS: -7.20 Total: -134.29 kcal Atomic # 8 Polarization: -57.84 SS G_CDS: -1.26 Total: -59.11 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -1.32 Total: 2.28 kcal Total: -90.50 -1.01 -91.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320343952.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.822 kcal (2) G-P(sol) polarization free energy of solvation -90.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds