Wall clock time and date at job start Tue Mar 31 2020 06:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 120.00359 * 2 1 4 4 H 1.48502 * 109.47664 * 89.99676 * 3 2 1 5 5 H 1.48502 * 109.47142 * 210.00068 * 3 2 1 6 6 H 1.48504 * 109.46999 * 329.99738 * 3 2 1 7 7 C 1.37874 * 119.99631 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00376 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00092 * 180.02562 * 7 2 1 10 10 O 1.42896 * 112.94230 * 50.33275 * 9 7 2 11 11 C 1.53941 * 113.74015 * 278.74286 * 9 7 2 12 12 N 1.47819 * 86.03544 * 222.08399 * 11 9 7 13 13 C 1.34783 * 134.45503 * 204.64395 * 12 11 9 14 14 O 1.21753 * 119.99788 * 174.45683 * 13 12 11 15 15 C 1.46263 * 120.00175 * 354.46178 * 13 12 11 16 16 C 1.33483 * 122.20576 * 353.92585 * 15 13 12 17 17 S 1.75719 * 109.85302 * 179.88500 * 16 15 13 18 18 C 1.75945 * 91.05771 * 0.30935 * 17 16 15 19 19 C 1.36288 * 142.80283 * 179.80888 * 18 17 16 20 20 N 1.33737 * 107.81569 * 180.02562 * 19 18 17 21 21 C 1.30355 * 109.46339 * 0.02562 * 20 19 18 22 22 N 1.35922 * 109.81486 * 359.83591 * 18 17 16 23 23 C 1.47578 * 91.05207 * 24.54954 * 12 11 9 24 24 H 0.97008 * 119.99427 * 0.02562 * 1 2 3 25 25 H 0.96692 * 114.00221 * 309.66747 * 10 9 7 26 26 H 1.09000 * 113.77132 * 336.34624 * 11 9 7 27 27 H 1.08996 * 113.77312 * 107.74413 * 11 9 7 28 28 H 1.07997 * 125.07079 * 0.02562 * 16 15 13 29 29 H 1.07997 * 126.08952 * 0.02562 * 19 18 17 30 30 H 1.08005 * 125.57055 * 180.02562 * 21 20 19 31 31 H 1.08995 * 113.77328 * 221.15575 * 23 12 11 32 32 H 1.08999 * 113.86985 * 89.76687 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 1.4000 5 1 3.5468 1.4400 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 8 4.0682 -0.3540 1.0141 11 6 4.1318 -0.9804 -1.3915 12 7 5.0922 -2.0384 -1.0131 13 6 6.3442 -2.3578 -1.3967 14 8 6.9462 -3.2501 -0.8277 15 6 6.9797 -1.6325 -2.4964 16 6 6.3219 -0.7301 -3.2275 17 16 7.3904 -0.0594 -4.4507 18 6 8.7156 -1.0758 -3.8970 19 6 10.0221 -1.3816 -4.1355 20 7 10.3921 -2.3141 -3.2511 21 6 9.3839 -2.6031 -2.4771 22 7 8.3037 -1.8412 -2.8520 23 6 4.1312 -2.6027 -0.0457 24 1 -0.4850 0.8402 -0.0004 25 1 3.7023 0.5409 1.0277 26 1 3.4726 -1.2590 -2.2136 27 1 4.5871 0.0011 -1.5237 28 1 5.2879 -0.4519 -3.0867 29 1 10.6472 -0.9481 -4.9021 30 1 9.3960 -3.3229 -1.6720 31 1 4.5860 -2.9139 0.8947 32 1 3.4711 -3.3592 -0.4698 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321511428.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:18 Heat of formation + Delta-G solvation = 77.392267 kcal Electronic energy + Delta-G solvation = -21024.506044 eV Core-core repulsion = 17694.940924 eV Total energy + Delta-G solvation = -3329.565120 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.78661 -40.19728 -38.06362 -36.22875 -34.76412 -32.72282 -31.10271 -29.62213 -28.91726 -26.11440 -25.92393 -24.35359 -22.25715 -21.55626 -20.25637 -19.40622 -18.23586 -17.67844 -16.93264 -16.57138 -16.28041 -15.84388 -15.11162 -14.99733 -14.63471 -14.14558 -13.81771 -13.75654 -13.54060 -13.34144 -12.95988 -12.60933 -12.44934 -12.00019 -11.70496 -11.49588 -11.13617 -10.79736 -10.50911 -10.35610 -10.31985 -10.18435 -9.59009 -9.53548 -9.22643 -8.92486 -8.42837 -7.58343 -6.58037 -4.66164 0.45001 0.93251 1.36730 1.69329 2.21677 2.82325 2.83740 2.86748 3.01304 3.08139 3.18167 3.87065 4.23436 4.47851 4.55440 4.59805 4.80165 4.94284 5.10289 5.26809 5.33508 5.66075 5.74822 5.79430 5.89251 6.08035 6.10667 6.23007 6.34412 6.87393 6.99940 7.68032 7.79171 7.86723 8.09299 8.30618 8.46051 8.98022 10.53805 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.025713 B = 0.004910 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.679295 B = 5701.660719 C = 6368.120711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.083 3.917 3 Si 0.856 3.144 4 H -0.265 1.265 5 H -0.258 1.258 6 H -0.281 1.281 7 C -0.540 4.540 8 H 0.094 0.906 9 C 0.201 3.799 10 O -0.552 6.552 11 C 0.046 3.954 12 N -0.618 5.618 13 C 0.591 3.409 14 O -0.543 6.543 15 C 0.047 3.953 16 C -0.175 4.175 17 S 0.163 5.837 18 C -0.105 4.105 19 C 0.020 3.980 20 N -0.459 5.459 21 C 0.218 3.782 22 N -0.386 5.386 23 C 0.134 3.866 24 H 0.273 0.727 25 H 0.354 0.646 26 H 0.105 0.895 27 H 0.077 0.923 28 H 0.204 0.796 29 H 0.182 0.818 30 H 0.219 0.781 31 H 0.083 0.917 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.310 1.884 -8.436 13.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.124 4.124 3 Si 0.684 3.316 4 H -0.191 1.191 5 H -0.183 1.183 6 H -0.207 1.207 7 C -0.578 4.578 8 H 0.112 0.888 9 C 0.159 3.841 10 O -0.363 6.363 11 C -0.076 4.076 12 N -0.351 5.351 13 C 0.377 3.623 14 O -0.423 6.423 15 C -0.067 4.067 16 C -0.315 4.315 17 S 0.422 5.578 18 C -0.329 4.329 19 C -0.138 4.138 20 N -0.174 5.174 21 C -0.064 4.064 22 N -0.064 5.064 23 C 0.013 3.987 24 H 0.083 0.917 25 H 0.206 0.794 26 H 0.123 0.877 27 H 0.095 0.905 28 H 0.221 0.779 29 H 0.199 0.801 30 H 0.236 0.764 31 H 0.101 0.899 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.506 1.552 -8.985 14.681 hybrid contribution -0.668 0.892 0.776 1.358 sum 10.838 2.445 -8.209 13.814 Atomic orbital electron populations 1.69848 1.06069 1.27828 1.46805 1.24999 0.94911 0.98954 0.93489 0.87390 0.80274 0.84486 0.79468 1.19097 1.18341 1.20678 1.21182 0.87263 0.95891 1.53430 0.88809 1.20479 0.92792 0.87798 0.82996 1.86483 1.67539 1.25736 1.56499 1.25068 0.88625 0.90173 1.03777 1.49946 1.11321 1.32462 1.41375 1.16445 0.81381 0.82719 0.81743 1.90821 1.63128 1.32432 1.55926 1.18839 0.83685 1.02636 1.01528 1.26430 1.06048 0.99715 0.99271 1.84428 0.96804 1.41759 1.34812 1.24541 1.02061 1.06051 1.00261 1.21769 0.89999 0.99802 1.02277 1.70229 1.26721 1.14430 1.06012 1.25577 0.79002 0.99322 1.02520 1.43838 1.08325 1.30009 1.24249 1.23428 0.86455 0.97358 0.91476 0.91673 0.79373 0.87673 0.90496 0.77904 0.80101 0.76430 0.89894 0.87916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.85 13.96 55.43 0.77 -22.07 16 2 C 0.08 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.86 17.24 24.31 -169.99 -4.13 13.11 16 4 H -0.26 -5.29 7.05 56.52 0.40 -4.89 16 5 H -0.26 -4.70 5.16 56.52 0.29 -4.41 16 6 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.54 -12.72 9.19 -34.44 -0.32 -13.04 16 8 H 0.09 2.38 8.06 -52.48 -0.42 1.96 16 9 C 0.20 4.10 1.06 -90.85 -0.10 4.00 16 10 O -0.55 -11.93 13.35 -35.23 -0.47 -12.40 16 11 C 0.05 0.79 4.83 -2.84 -0.01 0.78 16 12 N -0.62 -11.11 3.60 -179.81 -0.65 -11.75 16 13 C 0.59 10.82 7.97 -13.03 -0.10 10.72 16 14 O -0.54 -11.11 16.74 5.14 0.09 -11.02 16 15 C 0.05 0.75 6.70 -83.21 -0.56 0.20 16 16 C -0.17 -2.33 10.06 29.07 0.29 -2.04 16 17 S 0.16 1.85 23.33 -107.50 -2.51 -0.66 16 18 C -0.10 -1.46 7.81 -16.44 -0.13 -1.58 16 19 C 0.02 0.26 11.93 -17.42 -0.21 0.05 16 20 N -0.46 -6.90 11.21 -13.83 -0.16 -7.06 16 21 C 0.22 3.35 12.37 -88.30 -1.09 2.26 16 22 N -0.39 -6.08 3.20 -60.39 -0.19 -6.28 16 23 C 0.13 2.48 8.23 -2.97 -0.02 2.45 16 24 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 25 H 0.35 7.28 3.57 45.56 0.16 7.45 16 26 H 0.11 1.63 8.08 -51.93 -0.42 1.22 16 27 H 0.08 1.24 5.60 -51.93 -0.29 0.95 16 28 H 0.20 2.45 4.71 -52.49 -0.25 2.20 16 29 H 0.18 1.76 8.06 -52.49 -0.42 1.33 16 30 H 0.22 3.06 7.69 -52.48 -0.40 2.65 16 31 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.10 1.73 8.09 -51.93 -0.42 1.31 16 LS Contribution 284.95 15.07 4.29 4.29 Total: -1.00 -28.79 284.95 -7.43 -36.22 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -2.13 Total: 11.93 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -2.35 Total: 5.70 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.22 Total: -47.16 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.38 Total: -23.43 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -4.13 Total: 13.11 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.51 Total: -0.66 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.79 -7.43 -36.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321511428.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.610 kcal (2) G-P(sol) polarization free energy of solvation -28.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds