Wall clock time and date at job start Tue Mar 31 2020 06:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 120.00359 * 2 1 4 4 H 1.48502 * 109.47664 * 89.99676 * 3 2 1 5 5 H 1.48502 * 109.47142 * 210.00068 * 3 2 1 6 6 H 1.48504 * 109.46999 * 329.99738 * 3 2 1 7 7 C 1.37874 * 119.99631 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00376 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00092 * 180.02562 * 7 2 1 10 10 O 1.42896 * 112.94230 * 50.33275 * 9 7 2 11 11 C 1.53941 * 113.74015 * 278.74286 * 9 7 2 12 12 N 1.47819 * 86.03544 * 222.08399 * 11 9 7 13 13 C 1.34783 * 134.45503 * 204.64395 * 12 11 9 14 14 O 1.21753 * 119.99788 * 174.45683 * 13 12 11 15 15 C 1.46263 * 120.00175 * 354.46178 * 13 12 11 16 16 C 1.33483 * 122.20576 * 353.92585 * 15 13 12 17 17 S 1.75719 * 109.85302 * 179.88500 * 16 15 13 18 18 C 1.75945 * 91.05771 * 0.30935 * 17 16 15 19 19 C 1.36288 * 142.80283 * 179.80888 * 18 17 16 20 20 N 1.33737 * 107.81569 * 180.02562 * 19 18 17 21 21 C 1.30355 * 109.46339 * 0.02562 * 20 19 18 22 22 N 1.35922 * 109.81486 * 359.83591 * 18 17 16 23 23 C 1.47578 * 91.05207 * 24.54954 * 12 11 9 24 24 H 0.97008 * 119.99427 * 0.02562 * 1 2 3 25 25 H 0.96692 * 114.00221 * 309.66747 * 10 9 7 26 26 H 1.09000 * 113.77132 * 336.34624 * 11 9 7 27 27 H 1.08996 * 113.77312 * 107.74413 * 11 9 7 28 28 H 1.07997 * 125.07079 * 0.02562 * 16 15 13 29 29 H 1.07997 * 126.08952 * 0.02562 * 19 18 17 30 30 H 1.08005 * 125.57055 * 180.02562 * 21 20 19 31 31 H 1.08995 * 113.77328 * 221.15575 * 23 12 11 32 32 H 1.08999 * 113.86985 * 89.76687 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 1.4000 5 1 3.5468 1.4400 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 8 4.0682 -0.3540 1.0141 11 6 4.1318 -0.9804 -1.3915 12 7 5.0922 -2.0384 -1.0131 13 6 6.3442 -2.3578 -1.3967 14 8 6.9462 -3.2501 -0.8277 15 6 6.9797 -1.6325 -2.4964 16 6 6.3219 -0.7301 -3.2275 17 16 7.3904 -0.0594 -4.4507 18 6 8.7156 -1.0758 -3.8970 19 6 10.0221 -1.3816 -4.1355 20 7 10.3921 -2.3141 -3.2511 21 6 9.3839 -2.6031 -2.4771 22 7 8.3037 -1.8412 -2.8520 23 6 4.1312 -2.6027 -0.0457 24 1 -0.4850 0.8402 -0.0004 25 1 3.7023 0.5409 1.0277 26 1 3.4726 -1.2590 -2.2136 27 1 4.5871 0.0011 -1.5237 28 1 5.2879 -0.4519 -3.0867 29 1 10.6472 -0.9481 -4.9021 30 1 9.3960 -3.3229 -1.6720 31 1 4.5860 -2.9139 0.8947 32 1 3.4711 -3.3592 -0.4698 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321511428.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:17 Heat of formation + Delta-G solvation = 56.971856 kcal Electronic energy + Delta-G solvation = -21025.391539 eV Core-core repulsion = 17694.940924 eV Total energy + Delta-G solvation = -3330.450616 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.85299 -41.62977 -39.51333 -37.40107 -36.36126 -34.55676 -32.31437 -30.68789 -30.35250 -27.66417 -27.41389 -25.58497 -23.43438 -22.71307 -21.67000 -20.69281 -19.53273 -19.31692 -18.24209 -18.17329 -17.44437 -17.13905 -16.43824 -16.28849 -15.76892 -15.48566 -15.39688 -14.98222 -14.92930 -14.58115 -14.47019 -14.17102 -13.92827 -13.15904 -13.01897 -12.77788 -12.63496 -12.45352 -11.95617 -11.66608 -11.58280 -11.36139 -11.18114 -10.98578 -10.62960 -10.55890 -9.89381 -8.54579 -8.42011 -6.55848 -0.66143 -0.04454 0.32811 0.57804 1.07221 1.25783 1.28943 1.42470 1.68677 1.78529 1.93228 2.18404 2.75327 3.00344 3.27005 3.47061 3.58686 3.71064 3.84356 4.06860 4.21069 4.33296 4.33482 4.46499 4.59726 4.65336 4.78588 4.85221 5.24761 5.27021 5.77819 6.03937 6.40621 6.55012 6.62585 6.65281 6.71676 7.12927 8.72989 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.025713 B = 0.004910 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.679295 B = 5701.660719 C = 6368.120711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.032 3.968 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.222 1.222 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.188 3.812 10 O -0.562 6.562 11 C 0.059 3.941 12 N -0.618 5.618 13 C 0.590 3.410 14 O -0.576 6.576 15 C 0.011 3.989 16 C -0.159 4.159 17 S 0.246 5.754 18 C -0.127 4.127 19 C 0.018 3.982 20 N -0.472 5.472 21 C 0.195 3.805 22 N -0.393 5.393 23 C 0.131 3.869 24 H 0.274 0.726 25 H 0.358 0.642 26 H 0.125 0.875 27 H 0.098 0.902 28 H 0.220 0.780 29 H 0.215 0.785 30 H 0.217 0.783 31 H 0.075 0.925 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.731 4.028 -10.505 16.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.170 4.170 3 Si 0.736 3.264 4 H -0.189 1.189 5 H -0.145 1.145 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.078 0.922 9 C 0.147 3.853 10 O -0.373 6.373 11 C -0.062 4.062 12 N -0.351 5.351 13 C 0.378 3.622 14 O -0.458 6.458 15 C -0.104 4.104 16 C -0.299 4.299 17 S 0.507 5.493 18 C -0.350 4.350 19 C -0.140 4.140 20 N -0.188 5.188 21 C -0.087 4.087 22 N -0.071 5.071 23 C 0.010 3.990 24 H 0.083 0.917 25 H 0.211 0.789 26 H 0.143 0.857 27 H 0.116 0.884 28 H 0.236 0.764 29 H 0.231 0.769 30 H 0.234 0.766 31 H 0.093 0.907 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 12.948 3.697 -11.075 17.435 hybrid contribution -1.148 0.196 1.381 1.806 sum 11.800 3.893 -9.694 15.760 Atomic orbital electron populations 1.69995 1.08102 1.28869 1.48921 1.25787 0.95506 1.02747 0.92926 0.86452 0.80463 0.79522 0.79966 1.18862 1.14521 1.20767 1.21290 0.89138 0.94747 1.52925 0.92213 1.20528 0.91022 0.88981 0.84750 1.86483 1.67384 1.26150 1.57323 1.24971 0.88293 0.91108 1.01872 1.49835 1.11406 1.32576 1.41262 1.16750 0.80995 0.82468 0.82003 1.90796 1.63766 1.33977 1.57286 1.18535 0.84341 1.04890 1.02590 1.26756 1.06837 0.97732 0.98570 1.84219 0.93863 1.39137 1.32100 1.25098 1.03211 1.06610 1.00104 1.22382 0.90325 0.99045 1.02282 1.70221 1.26847 1.15168 1.06522 1.25633 0.79530 1.00265 1.03318 1.43898 1.08253 1.30253 1.24701 1.23420 0.86866 0.96892 0.91837 0.91672 0.78932 0.85677 0.88426 0.76404 0.76877 0.76624 0.90675 0.86761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.27 13.96 21.45 0.30 -48.97 16 2 C 0.03 1.55 5.47 84.65 0.46 2.01 16 3 Si 0.91 33.97 24.31 68.60 1.67 35.64 16 4 H -0.26 -9.69 7.05 99.48 0.70 -8.99 16 5 H -0.22 -6.87 5.16 99.48 0.51 -6.36 16 6 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16 7 C -0.54 -25.71 9.19 25.60 0.24 -25.47 16 8 H 0.06 3.15 8.06 -2.91 -0.02 3.13 16 9 C 0.19 7.45 1.06 -10.88 -0.01 7.43 16 10 O -0.56 -23.29 13.35 -148.98 -1.99 -25.28 16 11 C 0.06 1.86 4.83 86.44 0.42 2.28 16 12 N -0.62 -21.24 3.60 -844.81 -3.04 -24.28 16 13 C 0.59 21.01 7.97 86.33 0.69 21.70 16 14 O -0.58 -23.77 16.74 -4.52 -0.08 -23.84 16 15 C 0.01 0.32 6.70 39.07 0.26 0.58 16 16 C -0.16 -3.61 10.06 66.74 0.67 -2.94 16 17 S 0.25 4.48 23.33 -56.49 -1.32 3.16 16 18 C -0.13 -3.15 7.81 83.60 0.65 -2.50 16 19 C 0.02 0.42 11.93 83.95 1.00 1.42 16 20 N -0.47 -13.71 11.21 -197.67 -2.22 -15.92 16 21 C 0.19 5.93 12.37 179.54 2.22 8.15 16 22 N -0.39 -11.78 3.20 -344.99 -1.10 -12.88 16 23 C 0.13 4.81 8.23 86.49 0.71 5.53 16 24 H 0.27 13.66 8.31 -92.70 -0.77 12.89 16 25 H 0.36 13.78 3.57 -74.06 -0.26 13.52 16 26 H 0.13 3.46 8.08 -2.39 -0.02 3.44 16 27 H 0.10 2.67 5.60 -2.39 -0.01 2.66 16 28 H 0.22 4.17 4.71 -2.91 -0.01 4.16 16 29 H 0.21 3.37 8.06 -2.91 -0.02 3.35 16 30 H 0.22 6.31 7.69 -2.91 -0.02 6.29 16 31 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 32 H 0.11 3.86 8.09 -2.39 -0.02 3.84 16 Total: -1.00 -63.53 284.95 0.27 -63.26 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: 0.73 Total: 30.93 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 7.31 Total: 18.20 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -6.06 Total: -102.05 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -2.06 Total: -49.13 kcal Atomic # 14 Polarization: 33.97 SS G_CDS: 1.67 Total: 35.64 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.32 Total: 3.16 kcal Total: -63.53 0.27 -63.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321511428.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.232 kcal (2) G-P(sol) polarization free energy of solvation -63.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds