Wall clock time and date at job start Tue Mar 31 2020 07:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 120.00188 * 2 1 4 4 H 1.48498 * 109.47038 * 240.00430 * 3 2 1 5 5 H 1.48501 * 109.46768 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47368 * 120.00178 * 3 2 1 7 7 C 1.37873 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00169 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99886 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46988 * 180.02562 * 9 7 2 11 11 C 1.34782 * 119.99774 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99857 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99951 * 180.02562 * 11 10 9 14 14 C 1.50697 * 109.47152 * 180.02562 * 13 11 10 15 15 C 1.33714 * 122.08195 * 124.99876 * 14 13 11 16 16 S 1.76249 * 108.21874 * 179.72543 * 15 14 13 17 17 C 1.76169 * 89.83874 * 0.02562 * 16 15 14 18 18 C 1.47902 * 125.47301 * 179.97438 * 17 16 15 19 19 N 1.34119 * 125.67162 * 179.66484 * 18 17 16 20 20 C 1.30626 * 109.77246 * 179.81549 * 19 18 17 21 21 N 1.34570 * 108.34053 * 0.44356 * 20 19 18 22 22 H 0.96994 * 126.73019 * 179.74681 * 21 20 19 23 23 N 1.31654 * 125.67429 * 359.97228 * 18 17 16 24 24 N 1.30223 * 109.05659 * 359.97438 * 17 16 15 25 25 H 0.97006 * 119.99825 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46988 * 60.00801 * 9 7 2 27 27 H 1.08995 * 109.47190 * 300.00300 * 9 7 2 28 28 H 0.96989 * 120.00133 * 0.02562 * 10 9 7 29 29 H 1.08999 * 109.47429 * 59.99626 * 13 11 10 30 30 H 1.09003 * 109.46701 * 299.99698 * 13 11 10 31 31 H 1.08006 * 125.88653 * 359.70455 * 15 14 13 32 32 H 1.08003 * 125.82998 * 180.19465 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5614 -5.1049 -0.0020 13 6 2.7331 -6.0288 -0.0005 14 6 1.9796 -7.3339 -0.0019 15 6 2.1883 -8.2734 -0.9301 16 16 1.1282 -9.6376 -0.5813 17 6 0.4925 -8.7791 0.8195 18 6 -0.5433 -9.2913 1.7427 19 7 -1.0256 -8.6439 2.8137 20 6 -1.9297 -9.3789 3.4042 21 7 -2.0455 -10.5348 2.7250 22 1 -2.6376 -11.2739 2.9344 23 7 -1.1411 -10.4608 1.6531 24 7 1.0810 -7.6211 0.9115 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6247 -2.5570 0.8896 28 1 3.1566 -3.4354 -0.0002 29 1 3.3591 -5.9712 0.8899 30 1 3.3603 -5.9709 -0.8900 31 1 2.8858 -8.2075 -1.7520 32 1 -2.4861 -9.1071 4.2891 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322242307.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:19 Heat of formation + Delta-G solvation = 100.192516 kcal Electronic energy + Delta-G solvation = -19542.501375 eV Core-core repulsion = 16246.217699 eV Total energy + Delta-G solvation = -3296.283676 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.29180 -39.93250 -38.17942 -34.06357 -33.41060 -32.29978 -32.03288 -31.18085 -28.57514 -26.73011 -25.66427 -23.08544 -22.68028 -21.23188 -19.74454 -19.33587 -18.54704 -17.84115 -16.82047 -15.91791 -15.87140 -15.50361 -15.18303 -14.99963 -14.54229 -14.25669 -13.96804 -13.42259 -13.10279 -12.58904 -12.47073 -12.39065 -11.86526 -11.52721 -11.25683 -10.92367 -10.80635 -10.70651 -10.32884 -10.25305 -10.23734 -9.62853 -9.35428 -9.32856 -8.98108 -8.65877 -8.52263 -7.75663 -6.09839 -4.16582 0.26436 1.14685 1.40609 1.61598 2.23561 2.47618 3.19569 3.29519 3.34052 3.35723 3.50610 3.55822 4.19235 4.24020 4.46678 4.70408 4.75498 5.05396 5.24590 5.26215 5.51322 5.66319 5.74678 5.83317 5.84847 6.13206 6.68218 7.40933 7.55658 7.62442 7.64578 7.74853 7.86836 8.05129 8.73408 8.86923 9.23933 9.50118 11.00369 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.022979 B = 0.003163 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.205326 B = 8850.397050 C = 9811.442214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.716 5.716 11 C 0.501 3.499 12 O -0.536 6.536 13 C -0.073 4.073 14 C 0.095 3.905 15 C -0.238 4.238 16 S 0.123 5.877 17 C 0.133 3.867 18 C 0.308 3.692 19 N -0.499 5.499 20 C 0.267 3.733 21 N -0.479 5.479 22 H 0.445 0.555 23 N -0.296 5.296 24 N -0.387 5.387 25 H 0.266 0.734 26 H 0.025 0.975 27 H 0.026 0.974 28 H 0.389 0.611 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.185 0.815 32 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.706 -23.209 3.224 23.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.131 3.869 10 N -0.365 5.365 11 C 0.284 3.716 12 O -0.413 6.413 13 C -0.116 4.116 14 C -0.039 4.039 15 C -0.378 4.378 16 S 0.377 5.623 17 C -0.146 4.146 18 C 0.025 3.975 19 N -0.226 5.226 20 C -0.033 4.033 21 N -0.199 5.199 22 H 0.291 0.709 23 N -0.128 5.128 24 N -0.101 5.101 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.222 0.778 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.202 0.798 32 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 0.598 -24.012 2.731 24.174 hybrid contribution 0.671 1.419 0.332 1.604 sum 1.268 -22.594 3.063 22.836 Atomic orbital electron populations 1.69975 1.06107 1.27304 1.48943 1.24956 0.94898 0.99403 0.94805 0.86484 0.79404 0.82405 0.78645 1.20110 1.21129 1.20073 1.21206 0.93213 0.90523 1.53112 0.91956 1.19063 0.88302 0.81867 0.97675 1.46399 1.10966 1.05974 1.73159 1.20090 0.89378 0.83986 0.78107 1.90709 1.16570 1.84582 1.49431 1.20384 0.97411 0.88645 1.05132 1.19585 0.95856 0.97056 0.91448 1.26979 1.07448 0.97311 1.06096 1.84842 1.33612 1.19358 1.24514 1.23554 1.00570 0.93212 0.97255 1.20597 0.95283 0.88773 0.92897 1.70746 1.12263 1.31512 1.08096 1.26340 0.95657 0.82942 0.98350 1.48121 1.32851 1.17665 1.21304 0.70903 1.78251 1.07694 1.19240 1.07656 1.66199 1.05630 1.13010 1.25279 0.92459 0.95715 0.95551 0.77823 0.87377 0.87524 0.79758 0.75358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.54 -15.01 9.28 -34.44 -0.32 -15.33 16 8 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 9 C 0.25 6.90 5.43 -5.19 -0.03 6.87 16 10 N -0.72 -15.49 5.55 -61.47 -0.34 -15.83 16 11 C 0.50 10.50 7.79 -10.98 -0.09 10.41 16 12 O -0.54 -13.88 15.43 5.56 0.09 -13.80 16 13 C -0.07 -1.07 6.17 -29.04 -0.18 -1.25 16 14 C 0.09 1.50 5.60 -84.40 -0.47 1.03 16 15 C -0.24 -2.95 11.02 29.15 0.32 -2.63 16 16 S 0.12 1.54 23.43 -107.50 -2.52 -0.98 16 17 C 0.13 2.18 7.54 -14.28 -0.11 2.07 16 18 C 0.31 4.79 8.04 -156.60 -1.26 3.53 16 19 N -0.50 -7.58 11.22 -12.47 -0.14 -7.72 16 20 C 0.27 2.39 13.11 -90.70 -1.19 1.20 16 21 N -0.48 -3.88 7.44 29.52 0.22 -3.66 16 22 H 0.44 1.52 8.96 -182.35 -1.63 -0.12 16 23 N -0.30 -3.78 12.84 32.03 0.41 -3.37 16 24 N -0.39 -7.18 9.67 -7.54 -0.07 -7.25 16 25 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.02 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.39 7.03 8.32 -40.82 -0.34 6.69 16 29 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.11 1.14 8.01 -51.93 -0.42 0.73 16 31 H 0.19 1.57 8.06 -52.48 -0.42 1.15 16 32 H 0.23 0.77 8.06 -52.48 -0.42 0.34 16 LS Contribution 310.90 15.07 4.69 4.69 Total: -1.00 -39.98 310.90 -9.41 -49.39 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -4.04 Total: 0.76 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -3.42 Total: 7.59 kcal Atomic # 7 Polarization: -64.61 SS G_CDS: 0.81 Total: -63.80 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.09 Total: -13.80 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.52 Total: -0.98 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -39.98 -9.41 -49.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322242307.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.581 kcal (2) G-P(sol) polarization free energy of solvation -39.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds