Wall clock time and date at job start Tue Mar 31 2020 07:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 120.00188 * 2 1 4 4 H 1.48498 * 109.47038 * 240.00430 * 3 2 1 5 5 H 1.48501 * 109.46768 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47368 * 120.00178 * 3 2 1 7 7 C 1.37873 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00169 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99886 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46988 * 180.02562 * 9 7 2 11 11 C 1.34782 * 119.99774 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99857 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99951 * 180.02562 * 11 10 9 14 14 C 1.50697 * 109.47152 * 180.02562 * 13 11 10 15 15 C 1.33714 * 122.08195 * 124.99876 * 14 13 11 16 16 S 1.76249 * 108.21874 * 179.72543 * 15 14 13 17 17 C 1.76169 * 89.83874 * 0.02562 * 16 15 14 18 18 C 1.47902 * 125.47301 * 179.97438 * 17 16 15 19 19 N 1.34119 * 125.67162 * 179.66484 * 18 17 16 20 20 C 1.30626 * 109.77246 * 179.81549 * 19 18 17 21 21 N 1.34570 * 108.34053 * 0.44356 * 20 19 18 22 22 H 0.96994 * 126.73019 * 179.74681 * 21 20 19 23 23 N 1.31654 * 125.67429 * 359.97228 * 18 17 16 24 24 N 1.30223 * 109.05659 * 359.97438 * 17 16 15 25 25 H 0.97006 * 119.99825 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46988 * 60.00801 * 9 7 2 27 27 H 1.08995 * 109.47190 * 300.00300 * 9 7 2 28 28 H 0.96989 * 120.00133 * 0.02562 * 10 9 7 29 29 H 1.08999 * 109.47429 * 59.99626 * 13 11 10 30 30 H 1.09003 * 109.46701 * 299.99698 * 13 11 10 31 31 H 1.08006 * 125.88653 * 359.70455 * 15 14 13 32 32 H 1.08003 * 125.82998 * 180.19465 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5614 -5.1049 -0.0020 13 6 2.7331 -6.0288 -0.0005 14 6 1.9796 -7.3339 -0.0019 15 6 2.1883 -8.2734 -0.9301 16 16 1.1282 -9.6376 -0.5813 17 6 0.4925 -8.7791 0.8195 18 6 -0.5433 -9.2913 1.7427 19 7 -1.0256 -8.6439 2.8137 20 6 -1.9297 -9.3789 3.4042 21 7 -2.0455 -10.5348 2.7250 22 1 -2.6376 -11.2739 2.9344 23 7 -1.1411 -10.4608 1.6531 24 7 1.0810 -7.6211 0.9115 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6247 -2.5570 0.8896 28 1 3.1566 -3.4354 -0.0002 29 1 3.3591 -5.9712 0.8899 30 1 3.3603 -5.9709 -0.8900 31 1 2.8858 -8.2075 -1.7520 32 1 -2.4861 -9.1071 4.2891 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322242307.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:18 Heat of formation + Delta-G solvation = 67.896866 kcal Electronic energy + Delta-G solvation = -19543.901819 eV Core-core repulsion = 16246.217699 eV Total energy + Delta-G solvation = -3297.684120 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.14874 -41.17344 -39.78302 -36.06997 -34.41653 -34.25556 -33.04990 -32.24326 -30.03520 -28.47772 -26.74148 -24.70467 -23.86068 -22.42593 -21.35704 -20.38921 -19.42702 -19.16865 -18.41587 -17.45553 -17.09400 -16.78750 -16.66945 -16.10050 -16.02282 -15.86217 -15.27384 -14.61385 -14.30517 -14.18772 -14.12160 -13.87241 -13.33236 -13.06786 -12.90563 -12.64285 -12.36528 -12.20542 -11.59844 -11.48275 -11.25739 -11.16702 -10.76945 -10.76362 -10.65108 -10.36526 -9.76189 -9.55615 -8.26425 -6.43535 -0.74573 0.14728 0.54783 0.61389 1.44033 1.48490 1.49199 1.54196 1.57211 1.89019 2.13219 2.37245 2.68341 2.76557 3.08044 3.35956 3.70982 4.06441 4.12080 4.19885 4.32853 4.54305 4.70981 4.89946 4.91395 5.10822 5.18462 5.27357 5.53102 5.76123 5.88168 6.14076 6.68218 6.70277 6.94896 7.00286 7.26336 7.61303 8.85880 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.022979 B = 0.003163 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.205326 B = 8850.397050 C = 9811.442214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.555 4.555 8 H 0.087 0.913 9 C 0.269 3.731 10 N -0.709 5.709 11 C 0.495 3.505 12 O -0.592 6.592 13 C -0.055 4.055 14 C 0.054 3.946 15 C -0.215 4.215 16 S 0.177 5.823 17 C 0.094 3.906 18 C 0.280 3.720 19 N -0.564 5.564 20 C 0.285 3.715 21 N -0.458 5.458 22 H 0.466 0.534 23 N -0.308 5.308 24 N -0.437 5.437 25 H 0.268 0.732 26 H -0.016 1.016 27 H -0.021 1.021 28 H 0.410 0.590 29 H 0.130 0.870 30 H 0.156 0.844 31 H 0.229 0.771 32 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.915 -24.041 2.807 24.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.810 3.190 4 H -0.184 1.184 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.593 4.593 8 H 0.105 0.895 9 C 0.146 3.854 10 N -0.360 5.360 11 C 0.282 3.718 12 O -0.473 6.473 13 C -0.097 4.097 14 C -0.079 4.079 15 C -0.355 4.355 16 S 0.430 5.570 17 C -0.183 4.183 18 C -0.003 4.003 19 N -0.293 5.293 20 C -0.013 4.013 21 N -0.180 5.180 22 H 0.317 0.683 23 N -0.142 5.142 24 N -0.153 5.153 25 H 0.077 0.923 26 H 0.002 0.998 27 H -0.003 1.003 28 H 0.246 0.754 29 H 0.148 0.852 30 H 0.174 0.826 31 H 0.246 0.754 32 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 2.835 -24.915 2.328 25.184 hybrid contribution -0.135 1.506 0.478 1.586 sum 2.700 -23.409 2.806 23.731 Atomic orbital electron populations 1.70159 1.08432 1.28566 1.50098 1.26130 0.95773 1.04096 0.93876 0.85173 0.77854 0.76373 0.79593 1.18387 1.21229 1.18615 1.21619 0.94406 0.90475 1.52755 0.89495 1.18462 0.88750 0.84588 0.93592 1.46126 1.11121 1.05290 1.73441 1.21286 0.89871 0.84851 0.75800 1.90684 1.19679 1.85413 1.51504 1.20400 0.95799 0.85005 1.08521 1.19826 0.97026 0.98374 0.92721 1.27509 1.06606 0.96005 1.05411 1.84553 1.32190 1.18284 1.21974 1.23916 1.01467 0.93732 0.99161 1.20755 0.96230 0.89672 0.93609 1.70662 1.14966 1.34160 1.09469 1.27212 0.93825 0.81893 0.98417 1.48026 1.31896 1.18277 1.19810 0.68295 1.78107 1.08400 1.18399 1.09320 1.66154 1.07110 1.14629 1.27424 0.92330 0.99812 1.00295 0.75365 0.85172 0.82584 0.75398 0.70286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.17 13.29 21.45 0.28 -57.88 16 2 C 0.00 0.03 5.46 84.65 0.46 0.49 16 3 Si 0.99 43.10 29.54 68.60 2.03 45.13 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 7 C -0.55 -30.98 9.28 25.60 0.24 -30.74 16 8 H 0.09 4.31 7.60 -2.91 -0.02 4.29 16 9 C 0.27 15.48 5.43 85.63 0.46 15.94 16 10 N -0.71 -31.05 5.55 -466.77 -2.59 -33.64 16 11 C 0.50 21.08 7.79 87.66 0.68 21.76 16 12 O -0.59 -32.35 15.43 -3.03 -0.05 -32.39 16 13 C -0.06 -1.52 6.17 29.10 0.18 -1.34 16 14 C 0.05 1.67 5.60 41.61 0.23 1.90 16 15 C -0.22 -4.77 11.02 66.79 0.74 -4.04 16 16 S 0.18 4.19 23.43 -56.49 -1.32 2.87 16 17 C 0.09 3.19 7.54 87.49 0.66 3.85 16 18 C 0.28 9.03 8.04 137.23 1.10 10.13 16 19 N -0.56 -17.71 11.22 -193.37 -2.17 -19.88 16 20 C 0.28 4.84 13.11 180.38 2.36 7.21 16 21 N -0.46 -6.88 7.44 -60.52 -0.45 -7.33 16 22 H 0.47 2.27 8.96 -213.11 -1.91 0.36 16 23 N -0.31 -7.88 12.84 -52.58 -0.68 -8.56 16 24 N -0.44 -16.74 9.67 -177.78 -1.72 -18.46 16 25 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 26 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 27 H -0.02 -1.38 8.14 -2.39 -0.02 -1.40 16 28 H 0.41 14.29 8.32 -92.72 -0.77 13.51 16 29 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 30 H 0.16 2.67 8.01 -2.39 -0.02 2.65 16 31 H 0.23 2.75 8.06 -2.91 -0.02 2.73 16 32 H 0.28 1.16 8.06 -2.91 -0.02 1.14 16 Total: -1.00 -95.69 310.90 -1.02 -96.70 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -1.48 Total: 8.27 kcal Atomic # 6 Polarization: 18.04 SS G_CDS: 7.12 Total: 25.17 kcal Atomic # 7 Polarization: -138.43 SS G_CDS: -7.32 Total: -145.75 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -0.05 Total: -32.39 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -1.32 Total: 2.87 kcal Total: -95.69 -1.02 -96.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322242307.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.601 kcal (2) G-P(sol) polarization free energy of solvation -95.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds