Wall clock time and date at job start Tue Mar 31 2020 06:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86800 * 120.00058 * 2 1 4 4 H 1.48504 * 109.46959 * 240.00076 * 3 2 1 5 5 H 1.48503 * 109.46903 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47338 * 119.99635 * 3 2 1 7 7 C 1.38804 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99477 * 179.97438 * 7 2 1 9 9 S 1.76192 * 120.00049 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00250 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47330 * 179.97438 * 10 9 7 12 12 N 1.31127 * 126.55148 * 89.99933 * 11 10 9 13 13 C 1.34498 * 105.61513 * 180.02562 * 12 11 10 14 14 C 1.50703 * 126.28894 * 179.97438 * 13 12 11 15 15 N 1.46505 * 109.47064 * 89.99998 * 14 13 12 16 16 C 1.35758 * 119.62563 * 269.72852 * 15 14 13 17 17 C 1.35351 * 120.70082 * 179.71604 * 16 15 14 18 18 C 1.40192 * 119.94534 * 0.53648 * 17 16 15 19 19 C 1.36399 * 119.26812 * 359.74094 * 18 17 16 20 20 C 1.34663 * 119.62092 * 90.00226 * 15 14 13 21 21 O 1.22059 * 119.98809 * 359.97438 * 20 15 14 22 22 N 1.29955 * 107.42503 * 0.24307 * 13 12 11 23 23 O 1.21298 * 110.24419 * 359.57536 * 22 13 12 24 24 H 0.97003 * 119.99833 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47040 * 59.99472 * 10 9 7 26 26 H 1.09000 * 109.47147 * 300.00007 * 10 9 7 27 27 H 1.09002 * 109.47152 * 330.00081 * 14 13 12 28 28 H 1.09001 * 109.46980 * 210.00181 * 14 13 12 29 29 H 1.07996 * 119.64728 * 0.02562 * 16 15 14 30 30 H 1.07997 * 120.02280 * 180.27097 * 17 16 15 31 31 H 1.08005 * 120.36063 * 179.76869 * 18 17 16 32 32 H 1.08002 * 120.34294 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 0.0012 12 7 1.7133 -6.0343 -1.0519 13 6 1.2724 -7.2104 -0.5707 14 6 0.8271 -8.3970 -1.3860 15 7 1.9761 -9.2666 -1.6506 16 6 2.7230 -9.0706 -2.7672 17 6 3.7925 -9.8573 -3.0301 18 6 4.1315 -10.8946 -2.1500 19 6 3.3765 -11.0936 -1.0315 20 6 2.2760 -10.2548 -0.7863 21 8 1.5922 -10.4214 0.2109 22 7 1.2955 -7.1335 0.7263 23 8 1.7082 -6.0475 1.0751 24 1 -0.4850 0.8401 -0.0004 25 1 3.1246 -3.7313 0.8905 26 1 3.1245 -3.7314 -0.8894 27 1 0.4075 -8.0518 -2.3309 28 1 0.0698 -8.9536 -0.8339 29 1 2.4640 -8.2752 -3.4503 30 1 4.3817 -9.6889 -3.9194 31 1 4.9813 -11.5288 -2.3552 32 1 3.6222 -11.8872 -0.3415 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331483309.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:41 Heat of formation + Delta-G solvation = 71.609218 kcal Electronic energy + Delta-G solvation = -19835.643713 eV Core-core repulsion = 16505.827821 eV Total energy + Delta-G solvation = -3329.815892 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.41669 -41.50653 -37.09988 -36.21016 -34.74782 -33.08337 -32.60013 -30.14854 -28.85845 -28.23482 -25.67887 -24.26279 -23.77113 -22.79221 -21.44418 -18.29328 -18.10981 -17.57442 -17.52383 -17.01601 -16.52248 -16.07807 -14.97759 -14.94884 -14.70182 -14.38403 -14.34897 -14.06839 -13.19141 -13.06507 -12.80173 -12.60432 -12.16986 -12.11046 -11.94333 -11.61147 -11.21874 -11.13624 -11.04475 -10.87448 -10.54356 -10.37100 -10.09911 -9.53116 -9.21767 -8.61479 -8.24050 -6.79395 -6.39941 -4.15298 0.56331 1.22799 1.65993 1.92647 2.67241 2.95577 3.15548 3.16532 3.20956 3.29380 3.36745 3.71938 3.97982 4.04249 4.37436 4.45312 4.66072 4.80706 4.97480 4.97580 5.04078 5.08904 5.17430 5.33533 5.58500 5.68264 5.78609 5.80065 6.00873 6.03807 6.10659 6.24138 6.81757 7.43972 7.81872 8.18297 8.31343 9.05937 10.67971 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.035612 B = 0.003067 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.062583 B = 9128.123552 C = 9456.666111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.925 3.075 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.080 0.920 9 S -0.080 6.080 10 C -0.044 4.044 11 C 0.229 3.771 12 N -0.475 5.475 13 C 0.132 3.868 14 C 0.191 3.809 15 N -0.494 5.494 16 C 0.143 3.857 17 C -0.237 4.237 18 C -0.015 4.015 19 C -0.246 4.246 20 C 0.511 3.489 21 O -0.538 6.538 22 N -0.358 5.358 23 O 0.087 5.913 24 H 0.272 0.728 25 H 0.103 0.897 26 H 0.111 0.889 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.167 0.833 30 H 0.147 0.853 31 H 0.134 0.866 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.187 -17.184 -7.539 20.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.750 3.250 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.676 4.676 8 H 0.098 0.902 9 S 0.146 5.854 10 C -0.192 4.192 11 C 0.009 3.991 12 N -0.210 5.210 13 C -0.142 4.142 14 C 0.068 3.932 15 N -0.207 5.207 16 C 0.017 3.983 17 C -0.260 4.260 18 C -0.037 4.037 19 C -0.268 4.268 20 C 0.313 3.687 21 O -0.419 6.419 22 N -0.064 5.064 23 O 0.025 5.975 24 H 0.082 0.918 25 H 0.122 0.878 26 H 0.130 0.870 27 H 0.143 0.857 28 H 0.144 0.856 29 H 0.184 0.816 30 H 0.164 0.836 31 H 0.152 0.848 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.125 -18.140 -6.790 20.035 hybrid contribution 1.946 1.519 -0.034 2.469 sum 7.071 -16.621 -6.824 19.309 Atomic orbital electron populations 1.69985 1.06042 1.28018 1.46138 1.25029 0.95126 0.99250 0.94062 0.86120 0.79184 0.80616 0.79035 1.19719 1.20728 1.19690 1.22665 0.94847 0.90019 1.60077 0.90173 1.85206 1.04992 0.98223 1.96980 1.22006 1.04515 0.85693 1.07033 1.28238 0.93995 0.96848 0.80058 1.71870 1.18564 1.01831 1.28756 1.25654 1.03443 0.96072 0.88992 1.19946 0.87519 0.85188 1.00529 1.45547 1.26595 1.28030 1.20527 1.22124 0.90748 0.97676 0.87780 1.20676 1.00674 1.00403 1.04213 1.21467 0.96481 0.94082 0.91625 1.22118 0.98613 1.04304 1.01747 1.17279 0.87093 0.81025 0.83344 1.91008 1.52700 1.71556 1.26669 1.74732 1.16008 1.00232 1.15396 1.85352 1.58289 1.17982 1.35873 0.91844 0.87831 0.87040 0.85674 0.85573 0.81595 0.83571 0.84780 0.83448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.59 13.22 55.49 0.73 -23.85 16 2 C 0.08 2.01 5.49 -17.43 -0.10 1.91 16 3 Si 0.92 20.20 29.55 -169.99 -5.02 15.18 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.53 -13.90 9.50 30.94 0.29 -13.60 16 8 H 0.08 1.98 7.80 -52.48 -0.41 1.57 16 9 S -0.08 -1.94 21.42 -107.50 -2.30 -4.25 16 10 C -0.04 -0.81 6.30 36.00 0.23 -0.59 16 11 C 0.23 4.15 7.77 -13.06 -0.10 4.05 16 12 N -0.48 -8.20 11.55 -9.87 -0.11 -8.31 16 13 C 0.13 2.14 7.80 -156.36 -1.22 0.92 16 14 C 0.19 2.31 5.96 -5.19 -0.03 2.28 16 15 N -0.49 -5.76 2.57 -121.06 -0.31 -6.07 16 16 C 0.14 1.22 10.28 -16.84 -0.17 1.05 16 17 C -0.24 -1.70 10.01 -39.88 -0.40 -2.10 16 18 C -0.01 -0.12 10.10 -39.51 -0.40 -0.51 16 19 C -0.25 -2.65 9.99 -39.38 -0.39 -3.04 16 20 C 0.51 7.12 7.40 -15.45 -0.11 7.01 16 21 O -0.54 -9.63 16.64 4.86 0.08 -9.55 16 22 N -0.36 -6.63 12.16 30.90 0.38 -6.26 16 23 O 0.09 1.63 11.31 18.10 0.20 1.83 16 24 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.10 1.75 8.14 -51.91 -0.42 1.33 16 26 H 0.11 1.94 8.14 -51.92 -0.42 1.52 16 27 H 0.13 1.07 8.01 -51.93 -0.42 0.66 16 28 H 0.13 1.56 7.39 -51.93 -0.38 1.18 16 29 H 0.17 1.01 8.03 -52.49 -0.42 0.58 16 30 H 0.15 0.66 8.06 -52.49 -0.42 0.23 16 31 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 32 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 310.34 15.07 4.68 4.68 Total: -1.00 -33.61 310.34 -6.96 -40.57 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -2.88 Total: -1.35 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -2.41 Total: -2.62 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.68 Total: -44.50 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.29 Total: -7.71 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: -1.94 SS G_CDS: -2.30 Total: -4.25 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.61 -6.96 -40.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331483309.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.184 kcal (2) G-P(sol) polarization free energy of solvation -33.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds