Wall clock time and date at job start Tue Mar 31 2020 06:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86800 * 120.00058 * 2 1 4 4 H 1.48504 * 109.46959 * 240.00076 * 3 2 1 5 5 H 1.48503 * 109.46903 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47338 * 119.99635 * 3 2 1 7 7 C 1.38804 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99477 * 179.97438 * 7 2 1 9 9 S 1.76192 * 120.00049 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00250 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47330 * 179.97438 * 10 9 7 12 12 N 1.31127 * 126.55148 * 89.99933 * 11 10 9 13 13 C 1.34498 * 105.61513 * 180.02562 * 12 11 10 14 14 C 1.50703 * 126.28894 * 179.97438 * 13 12 11 15 15 N 1.46505 * 109.47064 * 89.99998 * 14 13 12 16 16 C 1.35758 * 119.62563 * 269.72852 * 15 14 13 17 17 C 1.35351 * 120.70082 * 179.71604 * 16 15 14 18 18 C 1.40192 * 119.94534 * 0.53648 * 17 16 15 19 19 C 1.36399 * 119.26812 * 359.74094 * 18 17 16 20 20 C 1.34663 * 119.62092 * 90.00226 * 15 14 13 21 21 O 1.22059 * 119.98809 * 359.97438 * 20 15 14 22 22 N 1.29955 * 107.42503 * 0.24307 * 13 12 11 23 23 O 1.21298 * 110.24419 * 359.57536 * 22 13 12 24 24 H 0.97003 * 119.99833 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47040 * 59.99472 * 10 9 7 26 26 H 1.09000 * 109.47147 * 300.00007 * 10 9 7 27 27 H 1.09002 * 109.47152 * 330.00081 * 14 13 12 28 28 H 1.09001 * 109.46980 * 210.00181 * 14 13 12 29 29 H 1.07996 * 119.64728 * 0.02562 * 16 15 14 30 30 H 1.07997 * 120.02280 * 180.27097 * 17 16 15 31 31 H 1.08005 * 120.36063 * 179.76869 * 18 17 16 32 32 H 1.08002 * 120.34294 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 0.0012 12 7 1.7133 -6.0343 -1.0519 13 6 1.2724 -7.2104 -0.5707 14 6 0.8271 -8.3970 -1.3860 15 7 1.9761 -9.2666 -1.6506 16 6 2.7230 -9.0706 -2.7672 17 6 3.7925 -9.8573 -3.0301 18 6 4.1315 -10.8946 -2.1500 19 6 3.3765 -11.0936 -1.0315 20 6 2.2760 -10.2548 -0.7863 21 8 1.5922 -10.4214 0.2109 22 7 1.2955 -7.1335 0.7263 23 8 1.7082 -6.0475 1.0751 24 1 -0.4850 0.8401 -0.0004 25 1 3.1246 -3.7313 0.8905 26 1 3.1245 -3.7314 -0.8894 27 1 0.4075 -8.0518 -2.3309 28 1 0.0698 -8.9536 -0.8339 29 1 2.4640 -8.2752 -3.4503 30 1 4.3817 -9.6889 -3.9194 31 1 4.9813 -11.5288 -2.3552 32 1 3.6222 -11.8872 -0.3415 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331483309.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:40 Heat of formation + Delta-G solvation = 48.336323 kcal Electronic energy + Delta-G solvation = -19836.652901 eV Core-core repulsion = 16505.827821 eV Total energy + Delta-G solvation = -3330.825080 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.81610 -42.36987 -38.08591 -37.40490 -35.81008 -34.62853 -34.34375 -30.92811 -30.20168 -29.38611 -27.69136 -25.16040 -24.89947 -23.82482 -22.68697 -19.93769 -19.52488 -18.83551 -18.37724 -18.18353 -17.32099 -17.15298 -16.88953 -16.41992 -15.89212 -15.65655 -15.28992 -15.12605 -14.77864 -14.47513 -13.94739 -13.44016 -13.28159 -13.20102 -13.03927 -12.97759 -12.85878 -12.78614 -12.69782 -12.27690 -12.01643 -11.31301 -11.21997 -11.13629 -11.02319 -10.42645 -9.05437 -8.76578 -8.38661 -6.18481 -0.22860 -0.13891 0.66884 0.88422 1.35689 1.47043 1.50386 1.57366 1.65358 1.80140 2.22091 2.27872 2.66223 2.84132 2.98623 3.23198 3.57933 3.74888 3.78341 4.01802 4.06113 4.15638 4.18438 4.32775 4.42155 4.48984 4.60885 4.69812 4.98792 5.15141 5.35046 5.42680 5.60352 5.99730 6.18364 6.89186 6.92689 7.04451 8.70448 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.035612 B = 0.003067 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.062583 B = 9128.123552 C = 9456.666111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.019 3.981 3 Si 0.997 3.003 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.539 4.539 8 H 0.092 0.908 9 S -0.146 6.146 10 C -0.019 4.019 11 C 0.221 3.779 12 N -0.470 5.470 13 C 0.144 3.856 14 C 0.190 3.810 15 N -0.494 5.494 16 C 0.128 3.872 17 C -0.224 4.224 18 C 0.010 3.990 19 C -0.281 4.281 20 C 0.492 3.508 21 O -0.600 6.600 22 N -0.385 5.385 23 O 0.075 5.925 24 H 0.273 0.727 25 H 0.122 0.878 26 H 0.129 0.871 27 H 0.165 0.835 28 H 0.117 0.883 29 H 0.195 0.805 30 H 0.185 0.815 31 H 0.172 0.828 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.645 -17.171 -9.856 22.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.185 1.185 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.686 4.686 8 H 0.110 0.890 9 S 0.080 5.920 10 C -0.168 4.168 11 C 0.000 4.000 12 N -0.205 5.205 13 C -0.131 4.131 14 C 0.066 3.934 15 N -0.206 5.206 16 C 0.003 3.997 17 C -0.246 4.246 18 C -0.011 4.011 19 C -0.303 4.303 20 C 0.297 3.703 21 O -0.487 6.487 22 N -0.094 5.094 23 O 0.016 5.984 24 H 0.082 0.918 25 H 0.140 0.860 26 H 0.147 0.853 27 H 0.182 0.818 28 H 0.135 0.865 29 H 0.212 0.788 30 H 0.203 0.797 31 H 0.190 0.810 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.621 -18.121 -9.137 21.678 hybrid contribution 1.256 1.379 0.565 1.948 sum 8.876 -16.742 -8.572 20.799 Atomic orbital electron populations 1.70133 1.07881 1.28925 1.47635 1.26071 0.95937 1.03173 0.93478 0.85007 0.77807 0.75660 0.79610 1.18499 1.20672 1.18710 1.23071 0.95514 0.90600 1.59441 0.89016 1.85263 1.09367 1.00153 1.97206 1.21806 1.02041 0.84144 1.08768 1.28191 0.94502 0.96871 0.80414 1.71883 1.18262 1.01999 1.28386 1.26351 1.01525 0.96613 0.88562 1.20206 0.87712 0.83856 1.01612 1.45510 1.26709 1.27216 1.21126 1.22777 0.90897 0.98937 0.87066 1.21237 0.99785 0.98829 1.04732 1.21934 0.95977 0.93617 0.89585 1.22137 0.99144 1.05072 1.03904 1.17823 0.87575 0.81813 0.83065 1.90961 1.54901 1.73512 1.29288 1.74756 1.17345 1.00405 1.16911 1.85338 1.58660 1.18210 1.36191 0.91831 0.86029 0.85324 0.81755 0.86522 0.78803 0.79743 0.81016 0.83496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.21 13.22 21.65 0.29 -51.93 16 2 C 0.02 1.00 5.49 84.86 0.47 1.46 16 3 Si 1.00 40.79 29.55 68.60 2.03 42.81 16 4 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 5 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.54 -28.10 9.50 67.96 0.65 -27.46 16 8 H 0.09 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -7.18 21.42 -56.49 -1.21 -8.39 16 10 C -0.02 -0.67 6.30 71.23 0.45 -0.22 16 11 C 0.22 7.89 7.77 88.38 0.69 8.57 16 12 N -0.47 -15.65 11.55 -303.20 -3.50 -19.15 16 13 C 0.14 4.59 7.80 138.46 1.08 5.67 16 14 C 0.19 4.43 5.96 85.63 0.51 4.94 16 15 N -0.49 -10.94 2.57 -655.05 -1.68 -12.62 16 16 C 0.13 1.76 10.28 83.42 0.86 2.62 16 17 C -0.22 -2.22 10.01 22.08 0.22 -2.00 16 18 C 0.01 0.13 10.10 22.32 0.23 0.35 16 19 C -0.28 -5.86 9.99 22.40 0.22 -5.63 16 20 C 0.49 13.92 7.40 84.82 0.63 14.55 16 21 O -0.60 -22.78 16.64 -5.51 -0.09 -22.87 16 22 N -0.39 -14.56 12.16 -60.31 -0.73 -15.29 16 23 O 0.07 2.83 11.31 74.83 0.85 3.67 16 24 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 25 H 0.12 3.95 8.14 -2.39 -0.02 3.93 16 26 H 0.13 4.22 8.14 -2.39 -0.02 4.20 16 27 H 0.16 2.43 8.01 -2.39 -0.02 2.41 16 28 H 0.12 2.98 7.39 -2.39 -0.02 2.97 16 29 H 0.20 1.50 8.03 -2.91 -0.02 1.48 16 30 H 0.19 0.49 8.06 -2.91 -0.02 0.47 16 31 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 32 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -76.23 310.34 3.09 -73.14 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 1.16 Total: 7.76 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 5.99 Total: 2.85 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -5.63 Total: -98.99 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: 0.75 Total: -19.19 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Atomic # 16 Polarization: -7.18 SS G_CDS: -1.21 Total: -8.39 kcal Total: -76.23 3.09 -73.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331483309.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.480 kcal (2) G-P(sol) polarization free energy of solvation -76.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds