Wall clock time and date at job start Tue Mar 31 2020 07:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99872 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99729 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00070 * 3 2 1 7 7 C 1.40050 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00087 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00147 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99828 * 180.27610 * 11 9 7 13 13 C 1.50700 * 109.46769 * 179.72341 * 12 11 9 14 14 C 1.35352 * 126.75361 * 94.71485 * 13 12 11 15 15 N 1.35317 * 106.17693 * 179.84844 * 14 13 12 16 16 C 1.46491 * 125.87029 * 180.18381 * 15 14 13 17 17 C 1.50703 * 109.47207 * 125.29585 * 16 15 14 18 18 C 1.35133 * 127.24710 * 90.00289 * 17 16 15 19 19 C 1.37811 * 114.75764 * 180.02562 * 18 17 16 20 20 N 1.30083 * 116.88356 * 359.97438 * 19 18 17 21 21 S 1.69605 * 107.15013 * 359.74153 * 20 19 18 22 22 N 1.28721 * 108.25949 * 0.41126 * 15 14 13 23 23 N 1.28636 * 110.17920 * 359.73997 * 22 15 14 24 24 H 0.96991 * 119.99824 * 0.02562 * 1 2 3 25 25 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 26 26 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 27 27 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 28 28 H 1.08002 * 126.90994 * 359.97438 * 14 13 12 29 29 H 1.08997 * 109.47170 * 245.29472 * 16 15 14 30 30 H 1.08999 * 109.46977 * 5.29533 * 16 15 14 31 31 H 1.08001 * 122.62212 * 0.02562 * 18 17 16 32 32 H 1.07998 * 121.56267 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9491 -3.6477 0.0005 12 6 1.2166 -4.9164 -0.0056 13 6 2.1960 -6.0618 -0.0111 14 6 2.6546 -6.7405 1.0664 15 7 3.5050 -7.6778 0.5876 16 6 4.2439 -8.6561 1.3894 17 6 3.9538 -10.0446 0.8805 18 6 4.6291 -10.7241 -0.0727 19 6 4.1390 -11.9841 -0.3399 20 7 3.1014 -12.3689 0.3437 21 16 2.6976 -11.1014 1.3959 22 7 3.5567 -7.5590 -0.6930 23 7 2.7874 -6.6040 -1.0815 24 1 -0.4849 0.8400 -0.0004 25 1 2.9191 -3.6476 0.0002 26 1 0.5900 -4.9784 0.8842 27 1 0.5899 -4.9699 -0.8957 28 1 2.3927 -6.5697 2.1002 29 1 5.3126 -8.4567 1.3117 30 1 3.9348 -8.5793 2.4318 31 1 5.4859 -10.3119 -0.5849 32 1 4.5955 -12.6226 -1.0817 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333119508.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:49 Heat of formation + Delta-G solvation = 108.217001 kcal Electronic energy + Delta-G solvation = -19500.557235 eV Core-core repulsion = 16204.621527 eV Total energy + Delta-G solvation = -3295.935708 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.26340 -39.28973 -37.28450 -35.59851 -33.62291 -32.34730 -31.88184 -30.73772 -28.17457 -27.02195 -25.04986 -24.68757 -22.11104 -21.30548 -20.46910 -19.66326 -18.31234 -17.63249 -17.05356 -16.77429 -15.79153 -15.31957 -14.94647 -14.62965 -14.33639 -14.26192 -13.92347 -13.63712 -13.46554 -13.26513 -12.68290 -12.16204 -11.71924 -11.64887 -11.37713 -11.14166 -10.96704 -10.94726 -10.65311 -10.44808 -10.27207 -10.20521 -10.13186 -9.25072 -9.19135 -8.83197 -7.59523 -7.50284 -6.16653 -4.61785 0.04453 0.93587 1.35776 1.54386 1.87877 2.37694 2.57737 3.16225 3.22907 3.26125 3.71027 3.97056 4.13741 4.44723 4.58507 4.61093 4.68567 4.69167 4.91054 5.12987 5.21682 5.26110 5.33988 5.51475 5.83497 6.05517 6.08101 6.41169 6.43669 6.51082 7.45747 7.93274 8.08132 8.34756 8.54239 9.04594 9.54016 10.61586 10.79850 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.046058 B = 0.002618 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.782758 B =10693.332701 C =10906.006756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.557 3.443 10 O -0.580 6.580 11 N -0.761 5.761 12 C 0.216 3.784 13 C -0.015 4.015 14 C -0.038 4.038 15 N -0.301 5.301 16 C 0.200 3.800 17 C -0.209 4.209 18 C -0.160 4.160 19 C 0.087 3.913 20 N -0.450 5.450 21 S 0.278 5.722 22 N -0.083 5.083 23 N -0.250 5.250 24 H 0.268 0.732 25 H 0.381 0.619 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.194 0.806 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.163 0.837 32 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.594 -21.255 5.894 24.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.085 0.915 9 C 0.361 3.639 10 O -0.463 6.463 11 N -0.418 5.418 12 C 0.089 3.911 13 C -0.152 4.152 14 C -0.188 4.188 15 N -0.095 5.095 16 C 0.077 3.923 17 C -0.340 4.340 18 C -0.196 4.196 19 C -0.110 4.110 20 N -0.271 5.271 21 S 0.430 5.570 22 N -0.063 5.063 23 N -0.118 5.118 24 H 0.079 0.921 25 H 0.212 0.788 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.211 0.789 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.181 0.819 32 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 9.367 -22.679 5.600 25.168 hybrid contribution 2.137 1.656 0.037 2.704 sum 11.504 -21.023 5.637 24.619 Atomic orbital electron populations 1.70018 1.07032 1.27259 1.35371 1.25705 0.94620 1.00259 0.92639 0.86371 0.80093 0.81409 0.78853 1.19732 1.20478 1.18971 1.20858 0.93565 0.89271 1.54331 0.91461 1.18217 0.87187 0.82220 0.76312 1.90606 1.14024 1.86696 1.54967 1.46160 1.08639 1.04095 1.82880 1.19070 0.90224 0.79647 1.02166 1.22385 1.02753 1.01407 0.88651 1.23507 0.98292 0.94731 1.02269 1.47286 1.31237 1.24117 1.06905 1.20164 0.98315 0.79797 0.94019 1.25258 1.03285 1.01285 1.04152 1.21440 1.04361 0.94483 0.99348 1.22904 0.92994 0.95670 0.99461 1.76820 1.17527 1.21696 1.11030 1.84215 1.30127 1.03111 1.39541 1.78307 1.19323 1.16253 0.92382 1.75151 1.06489 1.04129 1.26047 0.92101 0.78782 0.91385 0.91377 0.78917 0.86110 0.85924 0.81919 0.79456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.07 11.83 55.55 0.66 -22.42 16 2 C 0.09 2.45 5.50 -17.36 -0.10 2.35 16 3 Si 0.91 20.18 29.56 -169.99 -5.02 15.15 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.54 -15.40 9.54 -35.63 -0.34 -15.74 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.56 15.87 7.75 -12.99 -0.10 15.76 16 10 O -0.58 -18.75 15.02 5.20 0.08 -18.67 16 11 N -0.76 -17.26 5.54 -62.90 -0.35 -17.61 16 12 C 0.22 4.21 6.23 -5.19 -0.03 4.18 16 13 C -0.01 -0.24 6.61 -82.78 -0.55 -0.78 16 14 C -0.04 -0.45 11.50 -17.04 -0.20 -0.65 16 15 N -0.30 -3.33 3.43 -62.45 -0.21 -3.55 16 16 C 0.20 1.25 7.03 -5.20 -0.04 1.21 16 17 C -0.21 -1.55 5.97 -35.41 -0.21 -1.77 16 18 C -0.16 -1.11 10.17 -40.84 -0.42 -1.53 16 19 C 0.09 0.64 11.27 -18.45 -0.21 0.43 16 20 N -0.45 -4.39 12.09 28.86 0.35 -4.04 16 21 S 0.28 2.35 23.72 -107.50 -2.55 -0.20 16 22 N -0.08 -1.24 12.92 60.35 0.78 -0.46 16 23 N -0.25 -4.42 12.41 33.29 0.41 -4.01 16 24 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 25 H 0.38 7.88 8.44 -40.82 -0.34 7.54 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 28 H 0.19 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.12 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.12 0.39 8.07 -51.93 -0.42 -0.03 16 31 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.19 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 310.67 15.07 4.68 4.68 Total: -1.00 -38.16 310.67 -6.21 -44.37 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -2.85 Total: 3.28 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -2.18 Total: 3.47 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 1.64 Total: -52.08 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.08 Total: -18.67 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.55 Total: -0.20 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -38.16 -6.21 -44.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333119508.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.583 kcal (2) G-P(sol) polarization free energy of solvation -38.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds