Wall clock time and date at job start Tue Mar 31 2020 07:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99872 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99729 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00070 * 3 2 1 7 7 C 1.40050 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00087 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00147 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99828 * 180.27610 * 11 9 7 13 13 C 1.50700 * 109.46769 * 179.72341 * 12 11 9 14 14 C 1.35352 * 126.75361 * 94.71485 * 13 12 11 15 15 N 1.35317 * 106.17693 * 179.84844 * 14 13 12 16 16 C 1.46491 * 125.87029 * 180.18381 * 15 14 13 17 17 C 1.50703 * 109.47207 * 125.29585 * 16 15 14 18 18 C 1.35133 * 127.24710 * 90.00289 * 17 16 15 19 19 C 1.37811 * 114.75764 * 180.02562 * 18 17 16 20 20 N 1.30083 * 116.88356 * 359.97438 * 19 18 17 21 21 S 1.69605 * 107.15013 * 359.74153 * 20 19 18 22 22 N 1.28721 * 108.25949 * 0.41126 * 15 14 13 23 23 N 1.28636 * 110.17920 * 359.73997 * 22 15 14 24 24 H 0.96991 * 119.99824 * 0.02562 * 1 2 3 25 25 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 26 26 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 27 27 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 28 28 H 1.08002 * 126.90994 * 359.97438 * 14 13 12 29 29 H 1.08997 * 109.47170 * 245.29472 * 16 15 14 30 30 H 1.08999 * 109.46977 * 5.29533 * 16 15 14 31 31 H 1.08001 * 122.62212 * 0.02562 * 18 17 16 32 32 H 1.07998 * 121.56267 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9491 -3.6477 0.0005 12 6 1.2166 -4.9164 -0.0056 13 6 2.1960 -6.0618 -0.0111 14 6 2.6546 -6.7405 1.0664 15 7 3.5050 -7.6778 0.5876 16 6 4.2439 -8.6561 1.3894 17 6 3.9538 -10.0446 0.8805 18 6 4.6291 -10.7241 -0.0727 19 6 4.1390 -11.9841 -0.3399 20 7 3.1014 -12.3689 0.3437 21 16 2.6976 -11.1014 1.3959 22 7 3.5567 -7.5590 -0.6930 23 7 2.7874 -6.6040 -1.0815 24 1 -0.4849 0.8400 -0.0004 25 1 2.9191 -3.6476 0.0002 26 1 0.5900 -4.9784 0.8842 27 1 0.5899 -4.9699 -0.8957 28 1 2.3927 -6.5697 2.1002 29 1 5.3126 -8.4567 1.3117 30 1 3.9348 -8.5793 2.4318 31 1 5.4859 -10.3119 -0.5849 32 1 4.5955 -12.6226 -1.0817 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333119508.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:49 Heat of formation + Delta-G solvation = 78.038759 kcal Electronic energy + Delta-G solvation = -19501.865862 eV Core-core repulsion = 16204.621527 eV Total energy + Delta-G solvation = -3297.244335 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.32286 -39.86646 -39.34098 -36.56253 -35.31782 -34.44821 -32.66670 -32.18499 -29.07495 -28.69489 -26.79076 -25.32528 -23.07446 -22.51611 -21.65410 -21.05531 -19.47776 -18.81778 -18.20746 -17.65304 -17.38129 -16.52444 -16.15257 -16.02389 -15.88761 -15.21606 -15.02285 -14.77091 -14.48310 -14.27098 -14.00047 -13.58820 -13.44025 -13.08875 -12.74489 -12.63645 -12.55693 -12.32202 -11.99075 -11.85385 -11.54306 -11.19922 -10.90785 -10.82925 -10.42814 -9.79071 -9.78081 -9.48393 -8.26515 -6.82852 -0.54409 0.34957 0.56172 0.79324 1.24733 1.33399 1.43478 1.44505 1.59761 1.69736 2.28361 2.49700 3.09161 3.23665 3.37669 3.58994 3.68523 3.88022 4.15865 4.16695 4.17363 4.25826 4.44560 4.68739 4.78076 4.85799 4.95898 5.02738 5.34810 5.52765 5.56447 5.89295 6.19014 6.27999 6.89393 7.43889 7.53956 8.50504 8.69524 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.046058 B = 0.002618 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.782758 B =10693.332701 C =10906.006756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.029 3.971 3 Si 0.998 3.002 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.571 4.571 8 H 0.086 0.914 9 C 0.541 3.459 10 O -0.630 6.630 11 N -0.748 5.748 12 C 0.223 3.777 13 C -0.046 4.046 14 C -0.005 4.005 15 N -0.285 5.285 16 C 0.189 3.811 17 C -0.208 4.208 18 C -0.162 4.162 19 C 0.088 3.912 20 N -0.486 5.486 21 S 0.254 5.746 22 N -0.094 5.094 23 N -0.294 5.294 24 H 0.275 0.725 25 H 0.392 0.608 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.236 0.764 29 H 0.151 0.849 30 H 0.161 0.839 31 H 0.183 0.817 32 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.362 -21.244 7.145 26.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.186 4.186 3 Si 0.818 3.182 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.171 1.171 7 C -0.608 4.608 8 H 0.104 0.896 9 C 0.345 3.655 10 O -0.517 6.517 11 N -0.402 5.402 12 C 0.097 3.903 13 C -0.184 4.184 14 C -0.157 4.157 15 N -0.079 5.079 16 C 0.069 3.931 17 C -0.339 4.339 18 C -0.198 4.198 19 C -0.109 4.109 20 N -0.307 5.307 21 S 0.407 5.593 22 N -0.074 5.074 23 N -0.162 5.162 24 H 0.085 0.915 25 H 0.225 0.775 26 H 0.092 0.908 27 H 0.056 0.944 28 H 0.252 0.748 29 H 0.168 0.832 30 H 0.179 0.821 31 H 0.200 0.800 32 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 12.195 -22.746 6.852 26.704 hybrid contribution 1.339 1.472 -0.343 2.019 sum 13.534 -21.275 6.509 26.041 Atomic orbital electron populations 1.70181 1.09488 1.28978 1.36427 1.26967 0.95537 1.04908 0.91227 0.85014 0.78821 0.75107 0.79299 1.18937 1.19638 1.17122 1.21393 0.94652 0.90002 1.54722 0.89617 1.18573 0.86811 0.84048 0.76037 1.90560 1.16054 1.87831 1.57268 1.45809 1.09102 1.04099 1.81239 1.18896 0.90773 0.79604 1.00998 1.21908 1.04173 1.02011 0.90262 1.23942 0.96057 0.92849 1.02843 1.47639 1.30188 1.23926 1.06146 1.20820 0.99550 0.77777 0.94988 1.25417 1.02639 1.01641 1.04159 1.21743 1.04767 0.94267 0.99038 1.23428 0.92103 0.96218 0.99112 1.76829 1.18917 1.22769 1.12202 1.84211 1.31241 1.03777 1.40104 1.78202 1.19190 1.15763 0.94222 1.75086 1.07919 1.05577 1.27599 0.91520 0.77495 0.90769 0.94379 0.74772 0.83188 0.82096 0.79993 0.76833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.42 11.83 21.84 0.26 -50.16 16 2 C 0.03 1.61 5.50 85.30 0.47 2.07 16 3 Si 1.00 40.94 29.56 68.60 2.03 42.97 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 7 C -0.57 -32.53 9.54 24.83 0.24 -32.30 16 8 H 0.09 4.39 7.85 -2.91 -0.02 4.37 16 9 C 0.54 31.62 7.75 86.36 0.67 32.29 16 10 O -0.63 -42.35 15.02 -4.33 -0.06 -42.42 16 11 N -0.75 -34.36 5.54 -471.15 -2.61 -36.97 16 12 C 0.22 8.92 6.23 85.63 0.53 9.46 16 13 C -0.05 -1.45 6.61 41.60 0.28 -1.18 16 14 C -0.01 -0.11 11.50 83.49 0.96 0.85 16 15 N -0.28 -5.42 3.43 -351.48 -1.21 -6.63 16 16 C 0.19 1.58 7.03 85.64 0.60 2.18 16 17 C -0.21 -2.53 5.97 24.97 0.15 -2.38 16 18 C -0.16 -1.85 10.17 21.45 0.22 -1.63 16 19 C 0.09 1.15 11.27 84.85 0.96 2.10 16 20 N -0.49 -9.08 12.09 -62.60 -0.76 -9.84 16 21 S 0.25 3.99 23.72 -56.49 -1.34 2.65 16 22 N -0.09 -2.64 12.92 37.02 0.48 -2.16 16 23 N -0.29 -10.31 12.41 -48.60 -0.60 -10.92 16 24 H 0.27 15.24 8.29 -92.71 -0.77 14.47 16 25 H 0.39 16.14 8.44 -92.71 -0.78 15.35 16 26 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 27 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.24 2.80 8.06 -2.91 -0.02 2.78 16 29 H 0.15 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.16 0.17 8.07 -2.39 -0.02 0.15 16 31 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 32 H 0.22 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -87.31 310.67 1.65 -85.66 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.40 Total: 16.35 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 5.07 Total: 11.47 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -4.44 Total: -116.68 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -0.06 Total: -42.42 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.34 Total: 2.65 kcal Total: -87.31 1.65 -85.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333119508.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.701 kcal (2) G-P(sol) polarization free energy of solvation -87.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds