Wall clock time and date at job start Tue Mar 31 2020 06:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.94577 * 50.33394 * 9 7 2 11 11 C 1.53954 * 113.74388 * 278.74046 * 9 7 2 12 12 N 1.47807 * 86.03668 * 222.08525 * 11 9 7 13 13 C 1.34774 * 134.45633 * 204.64086 * 12 11 9 14 14 O 1.21730 * 120.00356 * 179.86657 * 13 12 11 15 15 C 1.46429 * 120.00127 * 359.87184 * 13 12 11 16 16 C 1.35870 * 125.00146 * 179.72101 * 15 13 12 17 17 C 1.38731 * 115.21516 * 179.78645 * 16 15 13 18 18 O 1.36629 * 139.74946 * 180.02562 * 17 16 15 19 19 C 1.34070 * 109.73993 * 180.39939 * 18 17 16 20 20 C 1.34219 * 109.49166 * 0.02562 * 19 18 17 21 21 C 1.38038 * 113.37594 * 0.49188 * 17 16 15 22 22 S 1.75656 * 124.99206 * 0.02562 * 15 13 12 23 23 C 1.47586 * 91.05425 * 24.54926 * 12 11 9 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 0.96700 * 113.99800 * 309.66654 * 10 9 7 26 26 H 1.08995 * 113.76496 * 336.35212 * 11 9 7 27 27 H 1.09005 * 113.76577 * 107.74446 * 11 9 7 28 28 H 1.07999 * 122.39241 * 359.97438 * 16 15 13 29 29 H 1.08003 * 125.25519 * 179.97438 * 19 18 17 30 30 H 1.07998 * 126.51669 * 179.97438 * 20 19 18 31 31 H 1.08993 * 113.76952 * 221.15022 * 23 12 11 32 32 H 1.08995 * 113.86700 * 89.76371 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2446 -2.5614 -1.0132 11 6 0.7562 -2.9292 1.3924 12 7 1.1919 -4.2900 1.0142 13 6 0.8427 -5.5338 1.3981 14 8 1.3867 -6.5007 0.8972 15 6 -0.1912 -5.7221 2.4177 16 6 -0.6246 -6.9259 2.8751 17 6 -1.6114 -6.8678 3.8485 18 8 -2.3685 -7.7061 4.6173 19 6 -3.1889 -6.9878 5.3974 20 6 -2.9963 -5.6800 5.1654 21 6 -1.9864 -5.5794 4.1722 22 16 -1.0591 -4.4251 3.2239 23 6 2.1609 -3.7402 0.0462 24 1 -0.4850 0.8401 0.0004 25 1 -0.3474 -1.7969 -1.0267 26 1 1.3275 -2.4975 2.2141 27 1 -0.3215 -2.8326 1.5249 28 1 -0.2270 -7.8611 2.5094 29 1 -3.8961 -7.3983 6.1029 30 1 -3.5119 -4.8598 5.6428 31 1 2.2027 -4.2899 -0.8940 32 1 3.1462 -3.5468 0.4700 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342478174.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:55 Heat of formation + Delta-G solvation = 1.550157 kcal Electronic energy + Delta-G solvation = -20569.335859 eV Core-core repulsion = 17204.189228 eV Total energy + Delta-G solvation = -3365.146632 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.48493 -39.62901 -37.63885 -35.67438 -34.03302 -32.55087 -32.28069 -29.59631 -27.98034 -25.65277 -25.44258 -23.73405 -22.46561 -20.63933 -19.79097 -18.79855 -18.04391 -17.39087 -16.58414 -16.23001 -15.75498 -15.37641 -15.09188 -14.82839 -14.71760 -14.19460 -13.41752 -13.21360 -12.92902 -12.72670 -12.56624 -12.24232 -12.04668 -11.87423 -11.63043 -11.30993 -11.10216 -10.73967 -10.53426 -10.34973 -10.24744 -9.86268 -9.36911 -8.83512 -8.54013 -8.41239 -8.09589 -7.88730 -6.44787 -4.55478 0.40902 1.35478 1.97096 2.09776 2.37702 2.58870 3.11881 3.20556 3.23555 3.40613 3.54266 4.14807 4.54907 4.64126 4.78996 4.96028 5.10673 5.46812 5.47926 5.64744 5.77627 5.84919 5.92518 6.09207 6.15399 6.26637 6.38220 6.50026 6.56588 6.82734 7.00400 7.57581 7.74331 8.25838 8.48247 8.53873 9.15871 9.35645 10.62177 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.024990 B = 0.004420 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.164723 B = 6333.245710 C = 7123.909060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.270 1.270 6 H -0.283 1.283 7 C -0.539 4.539 8 H 0.073 0.927 9 C 0.244 3.756 10 O -0.571 6.571 11 C 0.069 3.931 12 N -0.627 5.627 13 C 0.601 3.399 14 O -0.549 6.549 15 C -0.209 4.209 16 C -0.041 4.041 17 C 0.003 3.997 18 O -0.168 6.168 19 C 0.005 3.995 20 C -0.175 4.175 21 C -0.244 4.244 22 S 0.235 5.765 23 C 0.117 3.883 24 H 0.274 0.726 25 H 0.393 0.607 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.158 0.842 29 H 0.212 0.788 30 H 0.157 0.843 31 H 0.075 0.925 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.687 -6.530 10.151 13.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.129 4.129 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.195 1.195 6 H -0.209 1.209 7 C -0.577 4.577 8 H 0.091 0.909 9 C 0.202 3.798 10 O -0.382 6.382 11 C -0.055 4.055 12 N -0.360 5.360 13 C 0.390 3.610 14 O -0.430 6.430 15 C -0.330 4.330 16 C -0.076 4.076 17 C -0.053 4.053 18 O -0.068 6.068 19 C -0.065 4.065 20 C -0.198 4.198 21 C -0.362 4.362 22 S 0.502 5.498 23 C -0.005 4.005 24 H 0.084 0.916 25 H 0.248 0.752 26 H 0.107 0.893 27 H 0.093 0.907 28 H 0.175 0.825 29 H 0.229 0.771 30 H 0.174 0.826 31 H 0.094 0.906 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.240 -6.344 9.666 12.694 hybrid contribution -0.223 0.004 0.591 0.632 sum -5.463 -6.339 10.257 13.238 Atomic orbital electron populations 1.69396 1.06181 1.28322 1.49738 1.25072 0.95030 0.99910 0.92927 0.86324 0.79863 0.81903 0.78418 1.20265 1.19490 1.20871 1.21481 0.94002 0.89752 1.52467 0.90854 1.19802 0.85612 0.91347 0.83074 1.86075 1.47027 1.49936 1.55202 1.24598 0.99974 0.77397 1.03513 1.50122 1.40172 1.04264 1.41397 1.16361 0.81495 0.82508 0.80682 1.90787 1.56097 1.39293 1.56835 1.24072 1.06049 0.96529 1.06315 1.18924 0.94785 0.99205 0.94678 1.19259 0.99732 0.86572 0.99785 1.84308 1.43071 1.35192 1.44222 1.24045 0.95704 0.90251 0.96514 1.20960 1.00661 0.97410 1.00767 1.24607 1.06220 0.99091 1.06258 1.84600 1.30509 1.03246 1.31461 1.23516 0.93240 0.92474 0.91232 0.91571 0.75238 0.89253 0.90734 0.82481 0.77131 0.82552 0.90636 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.93 11.20 55.43 0.62 -21.31 16 2 C 0.07 1.77 5.40 -17.82 -0.10 1.67 16 3 Si 0.91 18.87 29.54 -169.99 -5.02 13.85 16 4 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.54 -13.03 8.61 -34.44 -0.30 -13.33 16 8 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.24 5.65 1.40 -90.84 -0.13 5.53 16 10 O -0.57 -14.26 13.49 -35.23 -0.48 -14.74 16 11 C 0.07 1.44 6.68 -2.84 -0.02 1.42 16 12 N -0.63 -13.24 3.61 -179.74 -0.65 -13.89 16 13 C 0.60 12.66 8.01 -12.96 -0.10 12.56 16 14 O -0.55 -12.75 17.51 5.16 0.09 -12.66 16 15 C -0.21 -3.80 6.38 -37.13 -0.24 -4.04 16 16 C -0.04 -0.68 9.88 -40.25 -0.40 -1.08 16 17 C 0.00 0.04 7.79 -39.47 -0.31 -0.27 16 18 O -0.17 -2.24 10.72 -0.68 -0.01 -2.25 16 19 C 0.00 0.05 12.00 29.32 0.35 0.40 16 20 C -0.18 -1.99 10.91 -39.56 -0.43 -2.42 16 21 C -0.24 -3.61 7.35 -38.21 -0.28 -3.89 16 22 S 0.24 3.77 19.86 -107.50 -2.14 1.64 16 23 C 0.12 2.47 8.23 -2.96 -0.02 2.45 16 24 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 25 H 0.39 9.87 6.60 45.56 0.30 10.17 16 26 H 0.09 1.78 8.09 -51.93 -0.42 1.36 16 27 H 0.07 1.56 6.39 -51.93 -0.33 1.23 16 28 H 0.16 2.42 8.01 -52.49 -0.42 2.00 16 29 H 0.21 0.98 8.06 -52.48 -0.42 0.56 16 30 H 0.16 1.36 8.06 -52.49 -0.42 0.93 16 31 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 32 H 0.09 1.74 8.09 -51.93 -0.42 1.32 16 LS Contribution 297.42 15.07 4.48 4.48 Total: -1.00 -28.65 297.42 -7.17 -35.82 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -2.10 Total: 10.06 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -1.97 Total: -1.00 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: -0.03 Total: -35.20 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.39 Total: -29.65 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.85 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -2.14 Total: 1.64 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.65 -7.17 -35.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342478174.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.365 kcal (2) G-P(sol) polarization free energy of solvation -28.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds