Wall clock time and date at job start Tue Mar 31 2020 06:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.94577 * 50.33394 * 9 7 2 11 11 C 1.53954 * 113.74388 * 278.74046 * 9 7 2 12 12 N 1.47807 * 86.03668 * 222.08525 * 11 9 7 13 13 C 1.34774 * 134.45633 * 204.64086 * 12 11 9 14 14 O 1.21730 * 120.00356 * 179.86657 * 13 12 11 15 15 C 1.46429 * 120.00127 * 359.87184 * 13 12 11 16 16 C 1.35870 * 125.00146 * 179.72101 * 15 13 12 17 17 C 1.38731 * 115.21516 * 179.78645 * 16 15 13 18 18 O 1.36629 * 139.74946 * 180.02562 * 17 16 15 19 19 C 1.34070 * 109.73993 * 180.39939 * 18 17 16 20 20 C 1.34219 * 109.49166 * 0.02562 * 19 18 17 21 21 C 1.38038 * 113.37594 * 0.49188 * 17 16 15 22 22 S 1.75656 * 124.99206 * 0.02562 * 15 13 12 23 23 C 1.47586 * 91.05425 * 24.54926 * 12 11 9 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 0.96700 * 113.99800 * 309.66654 * 10 9 7 26 26 H 1.08995 * 113.76496 * 336.35212 * 11 9 7 27 27 H 1.09005 * 113.76577 * 107.74446 * 11 9 7 28 28 H 1.07999 * 122.39241 * 359.97438 * 16 15 13 29 29 H 1.08003 * 125.25519 * 179.97438 * 19 18 17 30 30 H 1.07998 * 126.51669 * 179.97438 * 20 19 18 31 31 H 1.08993 * 113.76952 * 221.15022 * 23 12 11 32 32 H 1.08995 * 113.86700 * 89.76371 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2446 -2.5614 -1.0132 11 6 0.7562 -2.9292 1.3924 12 7 1.1919 -4.2900 1.0142 13 6 0.8427 -5.5338 1.3981 14 8 1.3867 -6.5007 0.8972 15 6 -0.1912 -5.7221 2.4177 16 6 -0.6246 -6.9259 2.8751 17 6 -1.6114 -6.8678 3.8485 18 8 -2.3685 -7.7061 4.6173 19 6 -3.1889 -6.9878 5.3974 20 6 -2.9963 -5.6800 5.1654 21 6 -1.9864 -5.5794 4.1722 22 16 -1.0591 -4.4251 3.2239 23 6 2.1609 -3.7402 0.0462 24 1 -0.4850 0.8401 0.0004 25 1 -0.3474 -1.7969 -1.0267 26 1 1.3275 -2.4975 2.2141 27 1 -0.3215 -2.8326 1.5249 28 1 -0.2270 -7.8611 2.5094 29 1 -3.8961 -7.3983 6.1029 30 1 -3.5119 -4.8598 5.6428 31 1 2.2027 -4.2899 -0.8940 32 1 3.1462 -3.5468 0.4700 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342478174.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:55 Heat of formation + Delta-G solvation = -18.404170 kcal Electronic energy + Delta-G solvation = -20570.201144 eV Core-core repulsion = 17204.189228 eV Total energy + Delta-G solvation = -3366.011916 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.50934 -41.30545 -39.29661 -36.95558 -35.86991 -34.15709 -33.55935 -31.13625 -29.35837 -27.30142 -27.15938 -25.03812 -23.60749 -21.94247 -21.25926 -20.14107 -19.59212 -19.02911 -18.01236 -17.39799 -17.28160 -16.84160 -16.54490 -16.47182 -16.00704 -15.80678 -15.07468 -14.52932 -14.38010 -14.19848 -13.88459 -13.73975 -13.44715 -13.26696 -13.20649 -12.96108 -12.76074 -12.28592 -12.24289 -11.98200 -11.56657 -11.29715 -11.12249 -10.66779 -10.32161 -9.78533 -9.53235 -9.11995 -8.26676 -6.43831 -0.82010 0.14018 0.74303 1.00384 1.34542 1.45851 1.48264 1.52856 1.61137 1.92442 1.99293 2.41803 2.95658 3.31292 3.56427 3.71145 3.85761 4.08214 4.12786 4.34516 4.45807 4.54332 4.63615 4.63801 4.72023 4.79069 4.81022 4.94254 5.19253 5.30893 5.72736 5.83315 5.90370 6.60805 6.62441 6.89809 7.29402 7.42276 8.79874 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.024990 B = 0.004420 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.164723 B = 6333.245710 C = 7123.909060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.036 3.964 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.284 1.284 7 C -0.557 4.557 8 H 0.075 0.925 9 C 0.225 3.775 10 O -0.585 6.585 11 C 0.084 3.916 12 N -0.631 5.631 13 C 0.599 3.401 14 O -0.582 6.582 15 C -0.252 4.252 16 C -0.023 4.023 17 C -0.030 4.030 18 O -0.174 6.174 19 C 0.043 3.957 20 C -0.196 4.196 21 C -0.234 4.234 22 S 0.228 5.772 23 C 0.116 3.884 24 H 0.277 0.723 25 H 0.389 0.611 26 H 0.098 0.902 27 H 0.073 0.927 28 H 0.160 0.840 29 H 0.270 0.730 30 H 0.186 0.814 31 H 0.066 0.934 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.037 -6.567 12.474 15.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.165 4.165 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.209 1.209 7 C -0.595 4.595 8 H 0.094 0.906 9 C 0.183 3.817 10 O -0.396 6.396 11 C -0.039 4.039 12 N -0.363 5.363 13 C 0.390 3.610 14 O -0.466 6.466 15 C -0.372 4.372 16 C -0.058 4.058 17 C -0.085 4.085 18 O -0.074 6.074 19 C -0.027 4.027 20 C -0.219 4.219 21 C -0.352 4.352 22 S 0.495 5.505 23 C -0.005 4.005 24 H 0.086 0.914 25 H 0.243 0.757 26 H 0.116 0.884 27 H 0.091 0.909 28 H 0.177 0.823 29 H 0.286 0.714 30 H 0.203 0.797 31 H 0.085 0.915 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.576 -6.379 11.983 15.084 hybrid contribution 0.027 -0.097 0.003 0.101 sum -6.549 -6.476 11.987 15.116 Atomic orbital electron populations 1.69462 1.07100 1.29036 1.49870 1.25726 0.95739 1.02515 0.92516 0.85397 0.78523 0.78325 0.78448 1.19653 1.19522 1.20938 1.21700 0.94276 0.90464 1.53063 0.90644 1.20061 0.85802 0.91988 0.83811 1.86062 1.47471 1.49801 1.56295 1.24386 1.00008 0.77099 1.02429 1.50117 1.40219 1.04518 1.41413 1.16725 0.81658 0.81849 0.80791 1.90744 1.57525 1.39981 1.58332 1.23681 1.07601 0.97962 1.07915 1.19016 0.94085 0.98767 0.93915 1.19122 1.00974 0.87293 1.01089 1.84343 1.43221 1.35536 1.44281 1.25249 0.93512 0.89632 0.94292 1.21452 1.00528 0.99279 1.00640 1.24961 1.06091 0.98178 1.06013 1.84431 1.30956 1.03153 1.31944 1.23558 0.94009 0.91607 0.91352 0.91355 0.75712 0.88364 0.90910 0.82276 0.71431 0.79683 0.91500 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.82 11.20 21.45 0.24 -44.58 16 2 C 0.04 1.73 5.40 84.66 0.46 2.19 16 3 Si 0.97 38.29 29.54 68.60 2.03 40.32 16 4 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.56 -27.03 8.61 25.60 0.22 -26.81 16 8 H 0.08 3.54 7.81 -2.91 -0.02 3.51 16 9 C 0.22 10.62 1.40 -10.88 -0.02 10.60 16 10 O -0.58 -30.03 13.49 -148.98 -2.01 -32.04 16 11 C 0.08 3.57 6.68 86.45 0.58 4.14 16 12 N -0.63 -27.31 3.61 -844.59 -3.05 -30.36 16 13 C 0.60 26.05 8.01 86.38 0.69 26.74 16 14 O -0.58 -28.01 17.51 -4.44 -0.08 -28.09 16 15 C -0.25 -9.34 6.38 23.85 0.15 -9.18 16 16 C -0.02 -0.75 9.88 21.84 0.22 -0.53 16 17 C -0.03 -0.88 7.79 22.34 0.17 -0.70 16 18 O -0.17 -4.08 10.72 -25.36 -0.27 -4.35 16 19 C 0.04 0.62 12.00 66.90 0.80 1.42 16 20 C -0.20 -3.68 10.91 22.29 0.24 -3.44 16 21 C -0.23 -6.50 7.35 23.16 0.17 -6.33 16 22 S 0.23 7.30 19.86 -56.49 -1.12 6.18 16 23 C 0.12 5.04 8.23 86.49 0.71 5.75 16 24 H 0.28 12.84 8.31 -92.71 -0.77 12.06 16 25 H 0.39 20.09 6.60 -74.06 -0.49 19.60 16 26 H 0.10 3.95 8.09 -2.39 -0.02 3.93 16 27 H 0.07 3.10 6.39 -2.38 -0.02 3.09 16 28 H 0.16 5.00 8.01 -2.91 -0.02 4.98 16 29 H 0.27 0.53 8.06 -2.91 -0.02 0.51 16 30 H 0.19 2.35 8.06 -2.91 -0.02 2.33 16 31 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.11 4.27 8.09 -2.39 -0.02 4.25 16 Total: -1.00 -62.83 297.42 0.83 -61.99 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.70 Total: 27.09 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 4.40 Total: 3.84 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -2.81 Total: -74.94 kcal Atomic # 8 Polarization: -62.13 SS G_CDS: -2.36 Total: -64.49 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Atomic # 16 Polarization: 7.30 SS G_CDS: -1.12 Total: 6.18 kcal Total: -62.83 0.83 -61.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342478174.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.590 kcal (2) G-P(sol) polarization free energy of solvation -62.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds