Wall clock time and date at job start Tue Mar 31 2020 06:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00368 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00161 * 8 6 4 12 12 O 1.42905 * 109.47264 * 119.99945 * 2 1 3 13 13 C 1.34932 * 116.99735 * 270.00015 * 12 2 1 14 14 O 1.21652 * 120.00303 * 359.97438 * 13 12 2 15 15 C 1.46226 * 119.99500 * 179.97438 * 13 12 2 16 16 C 1.36919 * 126.00153 * 179.71195 * 15 13 12 17 17 N 1.30305 * 115.29882 * 179.84324 * 16 15 13 18 18 C 1.30963 * 117.32996 * 0.46306 * 17 16 15 19 19 C 1.46845 * 125.28301 * 179.76318 * 18 17 16 20 20 C 1.36436 * 125.97480 * 359.97438 * 19 18 17 21 21 C 1.40604 * 106.70938 * 179.97438 * 20 19 18 22 22 C 1.34955 * 107.09990 * 359.97438 * 21 20 19 23 23 O 1.34161 * 108.74235 * 359.73613 * 22 21 20 24 24 S 1.76121 * 109.42884 * 359.74686 * 18 17 16 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 29 29 H 1.08007 * 122.35399 * 0.04330 * 16 15 13 30 30 H 1.07991 * 126.64259 * 359.96489 * 20 19 18 31 31 H 1.08007 * 126.44677 * 180.02562 * 21 20 19 32 32 H 1.08002 * 125.62850 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 8 2.0064 -0.6736 1.1668 13 6 2.2105 0.0788 2.2681 14 8 1.9901 1.2748 2.2371 15 6 2.6968 -0.5434 3.4988 16 6 2.9506 0.1004 4.6802 17 7 3.3764 -0.6604 5.6486 18 6 3.5228 -1.9361 5.3911 19 6 3.9939 -2.9459 6.3475 20 6 4.3509 -2.7167 7.6442 21 6 4.7343 -3.9574 8.1834 22 6 4.5951 -4.8756 7.2042 23 8 4.1424 -4.2629 6.0998 24 16 3.0666 -2.2525 3.7197 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7089 1.1613 -3.4844 29 1 2.8049 1.1636 4.8020 30 1 4.3411 -1.7663 8.1570 31 1 5.0751 -4.1411 9.1917 32 1 4.8081 -5.9304 7.2959 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342565372.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:19 Heat of formation + Delta-G solvation = -41.370529 kcal Electronic energy + Delta-G solvation = -19719.991079 eV Core-core repulsion = 16352.983266 eV Total energy + Delta-G solvation = -3367.007812 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.61878 -41.58250 -40.50184 -37.78001 -35.37945 -34.22355 -32.98452 -31.77651 -30.24846 -27.52290 -27.07251 -24.78442 -23.15301 -22.54329 -22.23328 -20.55254 -20.13908 -18.84798 -18.44756 -17.82522 -17.41879 -17.33998 -17.01185 -16.63406 -15.94041 -15.43684 -15.40066 -14.93480 -14.32059 -14.09737 -13.94318 -13.85970 -13.51563 -13.29908 -13.10053 -12.86794 -12.76771 -12.44254 -12.18020 -11.84361 -11.65437 -11.31054 -11.12486 -11.02436 -10.88182 -10.62997 -10.56840 -9.17647 -8.31587 -6.48965 -1.41692 -0.18539 0.32660 0.44097 1.24151 1.40311 1.41656 1.45317 1.55087 1.63487 1.81401 1.87809 2.38160 2.99190 3.18512 3.58439 3.78850 3.97732 4.01753 4.15381 4.46416 4.58195 4.74317 4.76841 4.83811 4.95584 4.98373 5.04365 5.43128 5.45488 5.55949 5.81262 5.90203 5.97587 6.23630 6.52254 6.77580 7.22377 8.76590 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.028225 B = 0.003397 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.790893 B = 8240.729374 C = 8986.489463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.215 3.785 3 H 0.011 0.989 4 C -0.549 4.549 5 H 0.067 0.933 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.984 3.016 9 H -0.264 1.264 10 H -0.270 1.270 11 H -0.275 1.275 12 O -0.350 6.350 13 C 0.532 3.468 14 O -0.531 6.531 15 C -0.307 4.307 16 C 0.151 3.849 17 N -0.472 5.472 18 C 0.153 3.847 19 C -0.018 4.018 20 C -0.111 4.111 21 C -0.226 4.226 22 C 0.015 3.985 23 O -0.182 6.182 24 S 0.222 5.778 25 H 0.084 0.916 26 H 0.024 0.976 27 H 0.046 0.954 28 H 0.272 0.728 29 H 0.208 0.792 30 H 0.168 0.832 31 H 0.189 0.811 32 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.485 -12.464 21.068 25.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.161 3.839 3 H 0.029 0.971 4 C -0.587 4.587 5 H 0.085 0.915 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.807 3.193 9 H -0.188 1.188 10 H -0.195 1.195 11 H -0.200 1.200 12 O -0.266 6.266 13 C 0.377 3.623 14 O -0.424 6.424 15 C -0.429 4.429 16 C -0.011 4.011 17 N -0.188 5.188 18 C -0.115 4.115 19 C -0.071 4.071 20 C -0.136 4.136 21 C -0.245 4.245 22 C -0.055 4.055 23 O -0.078 6.078 24 S 0.484 5.516 25 H 0.102 0.898 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.185 0.815 31 H 0.206 0.794 32 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 7.302 -12.892 20.342 25.166 hybrid contribution -0.191 1.305 -0.864 1.577 sum 7.111 -11.587 19.477 23.753 Atomic orbital electron populations 1.22037 0.96666 1.00502 1.01044 1.20080 0.92254 0.92539 0.79005 0.97110 1.21305 1.33604 1.13977 0.89803 0.91460 1.25840 0.94639 0.95654 1.02131 1.70020 1.36435 1.23545 1.25279 0.85115 0.78397 0.78410 0.77368 1.18753 1.19519 1.20013 1.86167 1.76370 1.43038 1.20990 1.19769 0.74275 0.84718 0.83578 1.90820 1.50305 1.16489 1.84774 1.24861 1.20721 0.99122 0.98233 1.22535 0.92313 1.02122 0.84099 1.66503 1.18400 1.01691 1.32178 1.24801 0.99709 0.92478 0.94469 1.18517 1.13120 0.81577 0.93891 1.22334 0.98136 1.01495 0.91647 1.22277 1.07965 0.91152 1.03082 1.25431 0.97102 1.00887 0.82108 1.84083 1.66351 1.18187 1.39197 1.85254 1.56342 1.03365 1.06612 0.89782 0.95681 0.93522 0.91874 0.77505 0.81459 0.79353 0.72684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.62 9.31 71.98 0.67 -6.95 16 2 C 0.21 12.09 2.51 29.85 0.07 12.16 16 3 H 0.01 0.69 7.11 -2.39 -0.02 0.68 16 4 C -0.55 -31.66 8.89 25.60 0.23 -31.44 16 5 H 0.07 3.81 7.81 -2.91 -0.02 3.78 16 6 C 0.02 0.96 5.30 84.65 0.45 1.41 16 7 N -0.92 -52.81 11.32 21.45 0.24 -52.57 16 8 Si 0.98 43.10 29.54 68.60 2.03 45.13 16 9 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 O -0.35 -17.64 9.63 -58.48 -0.56 -18.20 16 13 C 0.53 24.19 7.87 69.90 0.55 24.74 16 14 O -0.53 -26.51 16.10 19.34 0.31 -26.19 16 15 C -0.31 -10.96 6.51 24.04 0.16 -10.81 16 16 C 0.15 4.56 11.05 84.61 0.93 5.49 16 17 N -0.47 -13.19 10.46 -188.67 -1.97 -15.17 16 18 C 0.15 4.07 7.44 87.08 0.65 4.72 16 19 C -0.02 -0.40 7.21 24.10 0.17 -0.22 16 20 C -0.11 -1.85 10.79 22.43 0.24 -1.61 16 21 C -0.23 -2.29 10.88 22.09 0.24 -2.05 16 22 C 0.01 0.14 12.08 67.06 0.81 0.95 16 23 O -0.18 -3.38 10.67 -6.29 -0.07 -3.44 16 24 S 0.22 6.64 23.27 -56.49 -1.31 5.32 16 25 H 0.08 4.70 6.07 -2.39 -0.01 4.69 16 26 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 28 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 29 H 0.21 5.52 8.06 -2.91 -0.02 5.50 16 30 H 0.17 2.51 8.06 -2.92 -0.02 2.49 16 31 H 0.19 0.69 8.06 -2.91 -0.02 0.67 16 32 H 0.26 -0.15 8.06 -2.91 -0.02 -0.18 16 Total: -1.00 -70.89 309.95 5.00 -65.89 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: 1.16 Total: 2.84 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 5.18 Total: -3.61 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: -1.73 Total: -67.74 kcal Atomic # 8 Polarization: -47.52 SS G_CDS: -0.32 Total: -47.84 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 6.64 SS G_CDS: -1.31 Total: 5.32 kcal Total: -70.89 5.00 -65.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342565372.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.517 kcal (2) G-P(sol) polarization free energy of solvation -70.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds