Wall clock time and date at job start Tue Mar 31 2020 06:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31515 * 119.99477 * 180.02562 * 6 4 2 8 8 Si 1.86789 * 119.99942 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47181 * 90.00449 * 8 6 4 10 10 H 1.48500 * 109.47253 * 209.99840 * 8 6 4 11 11 H 1.48501 * 109.47537 * 330.00117 * 8 6 4 12 12 O 1.42906 * 109.46748 * 239.99822 * 2 1 3 13 13 C 1.34935 * 116.99414 * 90.00343 * 12 2 1 14 14 O 1.21664 * 120.00310 * 359.97438 * 13 12 2 15 15 C 1.46217 * 119.99423 * 179.97438 * 13 12 2 16 16 C 1.36928 * 126.00186 * 179.71128 * 15 13 12 17 17 N 1.30306 * 115.29460 * 179.84061 * 16 15 13 18 18 C 1.30954 * 117.33562 * 0.46610 * 17 16 15 19 19 C 1.46845 * 125.28776 * 179.76829 * 18 17 16 20 20 C 1.36439 * 125.97393 * 359.96862 * 19 18 17 21 21 C 1.40596 * 106.71687 * 180.02562 * 20 19 18 22 22 C 1.34957 * 107.09590 * 0.02562 * 21 20 19 23 23 O 1.34166 * 108.74288 * 359.72943 * 22 21 20 24 24 S 1.76121 * 109.42770 * 359.74348 * 18 17 16 25 25 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 0.97006 * 119.99768 * 179.97438 * 7 6 4 29 29 H 1.07999 * 122.35081 * 0.03742 * 16 15 13 30 30 H 1.08003 * 126.64158 * 359.96979 * 20 19 18 31 31 H 1.08004 * 126.45471 * 180.02562 * 21 20 19 32 32 H 1.08002 * 125.63476 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1382 -0.8591 3.5565 8 14 0.6261 1.2798 2.6541 9 1 -0.8019 0.8745 2.6994 10 1 0.9774 1.9953 3.9071 11 1 0.8493 2.1773 1.4923 12 8 2.0063 -0.6737 -1.1668 13 6 2.2105 0.0788 -2.2681 14 8 1.9893 1.2748 -2.2373 15 6 2.6977 -0.5432 -3.4984 16 6 2.9411 0.0987 -4.6831 17 7 3.3762 -0.6605 -5.6486 18 6 3.5229 -1.9360 -5.3911 19 6 3.9945 -2.9458 -6.3473 20 6 4.3507 -2.7168 -7.6443 21 6 4.7349 -3.9572 -8.1832 22 6 4.5970 -4.8752 -7.2037 23 8 4.1554 -4.2605 -6.0958 24 16 3.0674 -2.2523 -3.7194 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9042 -0.5275 4.4376 29 1 2.7865 1.1603 -4.8076 30 1 4.3389 -1.7667 -8.1578 31 1 5.0762 -4.1408 -9.1913 32 1 4.8116 -5.9297 -7.2948 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342565373.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:22 Heat of formation + Delta-G solvation = -12.329991 kcal Electronic energy + Delta-G solvation = -19779.216746 eV Core-core repulsion = 16413.468225 eV Total energy + Delta-G solvation = -3365.748520 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.92111 -40.15491 -39.26430 -36.16201 -33.50552 -33.26760 -31.98571 -30.74336 -29.27978 -26.10974 -25.32855 -23.43781 -22.15747 -21.80083 -20.57242 -19.58997 -18.84153 -17.49743 -17.04182 -16.55748 -16.45928 -16.11996 -15.63915 -15.24627 -14.66164 -14.31513 -14.16564 -13.35537 -13.27990 -13.12192 -12.94802 -12.75165 -12.38099 -12.03656 -11.70155 -11.62530 -10.94780 -10.45302 -10.40744 -10.26494 -10.02975 -9.99844 -9.85995 -9.68567 -9.54781 -9.18534 -8.73013 -8.30503 -6.26892 -4.30103 -0.33268 0.91662 1.32588 1.44678 2.10800 2.21147 2.59741 3.13655 3.16242 3.23410 3.28607 3.30751 4.01399 4.22997 4.53084 4.59836 4.70137 4.99089 5.03961 5.33919 5.40737 5.47601 5.60093 5.85108 6.04460 6.07312 6.21275 6.32112 6.50397 6.59172 6.92248 7.21786 7.31711 7.42017 8.06920 8.45761 8.78876 9.29588 10.85046 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.035620 B = 0.003398 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.890659 B = 8238.818633 C = 8810.804634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.188 3.812 3 H 0.048 0.952 4 C -0.527 4.527 5 H 0.088 0.912 6 C 0.081 3.919 7 N -0.886 5.886 8 Si 0.879 3.121 9 H -0.273 1.273 10 H -0.289 1.289 11 H -0.262 1.262 12 O -0.328 6.328 13 C 0.533 3.467 14 O -0.501 6.501 15 C -0.265 4.265 16 C 0.125 3.875 17 N -0.459 5.459 18 C 0.123 3.877 19 C 0.030 3.970 20 C -0.129 4.129 21 C -0.219 4.219 22 C -0.009 4.009 23 O -0.166 6.166 24 S 0.233 5.767 25 H 0.058 0.942 26 H 0.038 0.962 27 H 0.064 0.936 28 H 0.270 0.730 29 H 0.195 0.805 30 H 0.161 0.839 31 H 0.157 0.843 32 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.484 -6.291 -22.207 23.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.134 3.866 3 H 0.065 0.935 4 C -0.564 4.564 5 H 0.106 0.894 6 C -0.123 4.123 7 N -0.523 5.523 8 Si 0.708 3.292 9 H -0.199 1.199 10 H -0.216 1.216 11 H -0.186 1.186 12 O -0.243 6.243 13 C 0.375 3.625 14 O -0.392 6.392 15 C -0.388 4.388 16 C -0.036 4.036 17 N -0.174 5.174 18 C -0.146 4.146 19 C -0.023 4.023 20 C -0.153 4.153 21 C -0.238 4.238 22 C -0.080 4.080 23 O -0.061 6.061 24 S 0.495 5.505 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.212 0.788 30 H 0.179 0.821 31 H 0.175 0.825 32 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 3.418 -6.854 -21.407 22.736 hybrid contribution -0.744 1.783 0.085 1.934 sum 2.674 -5.070 -21.323 22.080 Atomic orbital electron populations 1.22574 0.98387 1.01994 1.00002 1.20649 0.90683 0.94828 0.80419 0.93466 1.20756 1.33622 1.14942 0.87118 0.89433 1.24730 0.95602 0.96741 0.95197 1.69835 1.44540 1.39904 0.98029 0.86963 0.80756 0.83589 0.77871 1.19927 1.21606 1.18630 1.86212 1.75809 1.42058 1.20211 1.19303 0.75021 0.84929 0.83251 1.90858 1.48783 1.15267 1.84250 1.25236 1.16759 0.97814 0.99015 1.22282 0.94864 1.01501 0.84918 1.66375 1.16673 1.01498 1.32883 1.24372 1.02957 0.92159 0.95101 1.18563 1.09194 0.81163 0.93345 1.21969 1.00722 1.00035 0.92605 1.21869 1.07954 0.92465 1.01558 1.24369 1.00989 0.99156 0.83437 1.84072 1.66025 1.18807 1.37156 1.85448 1.55360 1.04479 1.05240 0.92379 0.94332 0.91690 0.91982 0.78797 0.82100 0.82504 0.77082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.91 9.01 37.16 0.33 -3.57 16 2 C 0.19 4.74 2.10 -27.88 -0.06 4.68 16 3 H 0.05 1.24 6.17 -51.93 -0.32 0.92 16 4 C -0.53 -15.02 9.47 -34.44 -0.33 -15.34 16 5 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 6 C 0.08 2.31 5.45 -17.82 -0.10 2.21 16 7 N -0.89 -26.51 13.96 55.43 0.77 -25.74 16 8 Si 0.88 21.51 24.37 -169.99 -4.14 17.36 16 9 H -0.27 -6.39 6.87 56.52 0.39 -6.00 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.26 -6.29 6.53 56.52 0.37 -5.92 16 12 O -0.33 -7.51 9.63 -41.14 -0.40 -7.91 16 13 C 0.53 10.86 7.87 33.93 0.27 11.12 16 14 O -0.50 -11.01 16.10 -19.39 -0.31 -11.33 16 15 C -0.27 -4.36 6.51 -36.85 -0.24 -4.60 16 16 C 0.12 1.78 11.05 -18.67 -0.21 1.57 16 17 N -0.46 -6.30 10.46 -10.99 -0.11 -6.41 16 18 C 0.12 1.62 7.44 -14.45 -0.11 1.51 16 19 C 0.03 0.35 7.21 -36.75 -0.26 0.08 16 20 C -0.13 -1.23 10.79 -39.34 -0.42 -1.65 16 21 C -0.22 -1.55 10.88 -39.86 -0.43 -1.99 16 22 C -0.01 -0.06 12.08 29.57 0.36 0.29 16 23 O -0.17 -1.72 10.67 4.65 0.05 -1.67 16 24 S 0.23 3.34 23.27 -107.50 -2.50 0.84 16 25 H 0.06 1.33 3.27 -51.93 -0.17 1.16 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.20 2.40 8.05 -52.49 -0.42 1.97 16 30 H 0.16 1.38 8.06 -52.48 -0.42 0.96 16 31 H 0.16 0.69 8.06 -52.48 -0.42 0.26 16 32 H 0.21 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 303.14 15.07 4.57 4.57 Total: -1.00 -32.40 303.14 -5.91 -38.30 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -2.63 Total: -2.33 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -1.20 Total: -5.69 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.66 Total: -32.15 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.66 Total: -20.90 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.14 Total: 17.36 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -2.50 Total: 0.84 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.40 -5.91 -38.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342565373.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.973 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds