Wall clock time and date at job start Tue Mar 31 2020 06:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31515 * 119.99477 * 180.02562 * 6 4 2 8 8 Si 1.86789 * 119.99942 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47181 * 90.00449 * 8 6 4 10 10 H 1.48500 * 109.47253 * 209.99840 * 8 6 4 11 11 H 1.48501 * 109.47537 * 330.00117 * 8 6 4 12 12 O 1.42906 * 109.46748 * 239.99822 * 2 1 3 13 13 C 1.34935 * 116.99414 * 90.00343 * 12 2 1 14 14 O 1.21664 * 120.00310 * 359.97438 * 13 12 2 15 15 C 1.46217 * 119.99423 * 179.97438 * 13 12 2 16 16 C 1.36928 * 126.00186 * 179.71128 * 15 13 12 17 17 N 1.30306 * 115.29460 * 179.84061 * 16 15 13 18 18 C 1.30954 * 117.33562 * 0.46610 * 17 16 15 19 19 C 1.46845 * 125.28776 * 179.76829 * 18 17 16 20 20 C 1.36439 * 125.97393 * 359.96862 * 19 18 17 21 21 C 1.40596 * 106.71687 * 180.02562 * 20 19 18 22 22 C 1.34957 * 107.09590 * 0.02562 * 21 20 19 23 23 O 1.34166 * 108.74288 * 359.72943 * 22 21 20 24 24 S 1.76121 * 109.42770 * 359.74348 * 18 17 16 25 25 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 0.97006 * 119.99768 * 179.97438 * 7 6 4 29 29 H 1.07999 * 122.35081 * 0.03742 * 16 15 13 30 30 H 1.08003 * 126.64158 * 359.96979 * 20 19 18 31 31 H 1.08004 * 126.45471 * 180.02562 * 21 20 19 32 32 H 1.08002 * 125.63476 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1382 -0.8591 3.5565 8 14 0.6261 1.2798 2.6541 9 1 -0.8019 0.8745 2.6994 10 1 0.9774 1.9953 3.9071 11 1 0.8493 2.1773 1.4923 12 8 2.0063 -0.6737 -1.1668 13 6 2.2105 0.0788 -2.2681 14 8 1.9893 1.2748 -2.2373 15 6 2.6977 -0.5432 -3.4984 16 6 2.9411 0.0987 -4.6831 17 7 3.3762 -0.6605 -5.6486 18 6 3.5229 -1.9360 -5.3911 19 6 3.9945 -2.9458 -6.3473 20 6 4.3507 -2.7168 -7.6443 21 6 4.7349 -3.9572 -8.1832 22 6 4.5970 -4.8752 -7.2037 23 8 4.1554 -4.2605 -6.0958 24 16 3.0674 -2.2523 -3.7194 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9042 -0.5275 4.4376 29 1 2.7865 1.1603 -4.8076 30 1 4.3389 -1.7667 -8.1578 31 1 5.0762 -4.1408 -9.1913 32 1 4.8116 -5.9297 -7.2948 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342565373.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:21 Heat of formation + Delta-G solvation = -33.779334 kcal Electronic energy + Delta-G solvation = -19780.146859 eV Core-core repulsion = 16413.468225 eV Total energy + Delta-G solvation = -3366.678634 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.62469 -41.68102 -40.54155 -37.88913 -35.34113 -34.23095 -33.13511 -32.52784 -30.34772 -27.43875 -27.09018 -24.87306 -23.16374 -22.55338 -22.24620 -20.58819 -20.25437 -18.93601 -18.63031 -17.86828 -17.62771 -17.36500 -17.15222 -16.68968 -15.96105 -15.50869 -15.37299 -15.04393 -14.63918 -14.33949 -14.02805 -13.91035 -13.81473 -13.61552 -13.50627 -12.90462 -12.77497 -12.28276 -11.99551 -11.74828 -11.60061 -11.31921 -11.28439 -11.11759 -10.90348 -10.84503 -10.58125 -9.18292 -8.47154 -6.57004 -1.43262 -0.19400 0.32270 0.42809 1.21055 1.23183 1.30657 1.40331 1.44645 1.61076 1.70095 1.86367 2.18222 2.85437 3.17486 3.56968 3.70869 3.94141 3.97335 4.14220 4.17957 4.35746 4.47515 4.57989 4.68005 4.83571 4.95046 4.97942 5.12619 5.28281 5.44739 5.46327 5.89862 6.03918 6.22926 6.46240 6.66238 7.07555 8.68778 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.035620 B = 0.003398 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.890659 B = 8238.818633 C = 8810.804634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.191 3.809 3 H 0.035 0.965 4 C -0.542 4.542 5 H 0.046 0.954 6 C 0.032 3.968 7 N -0.929 5.929 8 Si 0.941 3.059 9 H -0.249 1.249 10 H -0.282 1.282 11 H -0.255 1.255 12 O -0.342 6.342 13 C 0.536 3.464 14 O -0.524 6.524 15 C -0.309 4.309 16 C 0.155 3.845 17 N -0.472 5.472 18 C 0.155 3.845 19 C -0.020 4.020 20 C -0.110 4.110 21 C -0.226 4.226 22 C 0.014 3.986 23 O -0.183 6.183 24 S 0.215 5.785 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.276 0.724 29 H 0.212 0.788 30 H 0.169 0.831 31 H 0.189 0.811 32 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.261 -6.631 -25.166 26.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.136 3.864 3 H 0.053 0.947 4 C -0.580 4.580 5 H 0.065 0.935 6 C -0.169 4.169 7 N -0.566 5.566 8 Si 0.765 3.235 9 H -0.175 1.175 10 H -0.209 1.209 11 H -0.180 1.180 12 O -0.258 6.258 13 C 0.380 3.620 14 O -0.417 6.417 15 C -0.431 4.431 16 C -0.007 4.007 17 N -0.188 5.188 18 C -0.112 4.112 19 C -0.072 4.072 20 C -0.135 4.135 21 C -0.245 4.245 22 C -0.056 4.056 23 O -0.079 6.079 24 S 0.478 5.522 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.229 0.771 30 H 0.187 0.813 31 H 0.207 0.793 32 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 3.189 -7.200 -24.367 25.608 hybrid contribution -0.453 1.621 0.678 1.815 sum 2.735 -5.579 -23.689 24.490 Atomic orbital electron populations 1.22467 0.96141 1.02754 1.01012 1.20365 0.92319 0.93488 0.80187 0.94739 1.20920 1.33593 1.14115 0.89354 0.93546 1.25576 0.96836 0.99917 0.94522 1.69957 1.46005 1.41873 0.98813 0.85971 0.79875 0.79477 0.78135 1.17458 1.20873 1.17969 1.86189 1.76468 1.42523 1.20578 1.19709 0.74230 0.84706 0.83320 1.90821 1.50178 1.16014 1.84640 1.24818 1.21136 0.98966 0.98193 1.22582 0.91985 1.02177 0.83939 1.66506 1.18287 1.01631 1.32367 1.24793 0.99562 0.92475 0.94382 1.18542 1.13118 0.81698 0.93880 1.22338 0.97986 1.01482 0.91688 1.22279 1.07918 0.91142 1.03123 1.25430 0.97268 1.00857 0.82024 1.84088 1.66596 1.18411 1.38815 1.85424 1.56511 1.03647 1.06645 0.92293 0.92220 0.91144 0.91426 0.77126 0.81344 0.79338 0.72769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.44 9.01 71.98 0.65 -6.79 16 2 C 0.19 9.81 2.10 29.85 0.06 9.87 16 3 H 0.03 1.86 6.17 -2.39 -0.01 1.84 16 4 C -0.54 -32.17 9.47 25.60 0.24 -31.93 16 5 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 6 C 0.03 1.84 5.45 84.66 0.46 2.30 16 7 N -0.93 -57.00 13.96 21.45 0.30 -56.70 16 8 Si 0.94 44.15 24.37 68.60 1.67 45.82 16 9 H -0.25 -10.77 6.87 99.48 0.68 -10.08 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.26 -11.69 6.53 99.48 0.65 -11.04 16 12 O -0.34 -16.27 9.63 -58.51 -0.56 -16.84 16 13 C 0.54 22.43 7.87 69.89 0.55 22.98 16 14 O -0.52 -23.40 16.10 19.30 0.31 -23.09 16 15 C -0.31 -10.36 6.51 24.04 0.16 -10.20 16 16 C 0.15 4.34 11.05 84.61 0.93 5.27 16 17 N -0.47 -12.53 10.46 -188.67 -1.97 -14.50 16 18 C 0.16 4.01 7.44 87.08 0.65 4.66 16 19 C -0.02 -0.42 7.21 24.10 0.17 -0.25 16 20 C -0.11 -1.78 10.79 22.43 0.24 -1.54 16 21 C -0.23 -2.25 10.88 22.09 0.24 -2.01 16 22 C 0.01 0.14 12.08 67.07 0.81 0.95 16 23 O -0.18 -3.40 10.67 -6.29 -0.07 -3.47 16 24 S 0.21 6.31 23.27 -56.49 -1.31 4.99 16 25 H 0.06 2.60 3.27 -2.39 -0.01 2.59 16 26 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 28 H 0.28 15.61 8.31 -92.70 -0.77 14.84 16 29 H 0.21 5.01 8.05 -2.91 -0.02 4.99 16 30 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 31 H 0.19 0.65 8.06 -2.91 -0.02 0.63 16 32 H 0.26 -0.09 8.06 -2.91 -0.02 -0.11 16 Total: -1.00 -72.80 303.14 4.62 -68.18 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: 1.09 Total: 2.28 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 5.17 Total: -6.68 kcal Atomic # 7 Polarization: -69.53 SS G_CDS: -1.67 Total: -71.20 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -0.32 Total: -43.39 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.67 Total: 45.82 kcal Atomic # 16 Polarization: 6.31 SS G_CDS: -1.31 Total: 4.99 kcal Total: -72.80 4.62 -68.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342565373.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.401 kcal (2) G-P(sol) polarization free energy of solvation -72.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds