Wall clock time and date at job start Tue Mar 31 2020 06:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29494 * 121.53208 * 2 1 4 4 S 1.69474 * 107.86746 * 180.02562 * 3 2 1 5 5 C 1.72017 * 96.03829 * 359.81679 * 4 3 2 6 6 C 1.37978 * 105.35752 * 0.30314 * 5 4 3 7 7 C 1.47193 * 123.09958 * 179.91787 * 6 5 4 8 8 O 1.21532 * 120.00443 * 179.71129 * 7 6 5 9 9 O 1.34768 * 119.99800 * 359.70499 * 7 6 5 10 10 C 1.45202 * 116.99973 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46991 * 30.00163 * 10 9 7 12 12 C 1.50702 * 109.46955 * 270.00364 * 10 9 7 13 13 H 1.08002 * 120.00299 * 120.00381 * 12 10 9 14 14 C 1.37884 * 119.99942 * 299.71940 * 12 10 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 10 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 10 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.50700 * 109.47226 * 150.00299 * 10 9 7 21 21 C 1.34508 * 125.79061 * 219.71454 * 20 10 9 22 22 C 1.41382 * 106.84185 * 179.89080 * 21 20 10 23 23 C 1.34509 * 106.84098 * 0.36939 * 22 21 20 24 24 O 1.34302 * 125.78713 * 40.02556 * 20 10 9 25 25 H 1.09004 * 109.46871 * 269.97470 * 1 2 3 26 26 H 1.08997 * 109.47347 * 29.97364 * 1 2 3 27 27 H 1.09002 * 109.47302 * 149.97912 * 1 2 3 28 28 H 1.07999 * 127.31912 * 180.22835 * 5 4 3 29 29 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 30 30 H 1.08000 * 126.57921 * 0.02562 * 21 20 10 31 31 H 1.07998 * 126.57893 * 180.16910 * 22 21 20 32 32 H 1.08002 * 125.79278 * 179.75024 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1842 1.1037 0.0000 4 16 3.8310 0.7034 -0.0007 5 6 3.6027 -1.0016 0.0044 6 6 2.2355 -1.1872 -0.0005 7 6 1.6049 -2.5172 -0.0001 8 8 0.3935 -2.6155 0.0007 9 8 2.3708 -3.6261 -0.0007 10 6 1.6809 -4.9038 -0.0009 11 1 0.7250 -4.8005 -0.5144 12 6 1.4427 -5.3461 1.4199 13 1 0.4351 -5.5078 1.7735 14 6 2.5115 -5.5501 2.2668 15 7 3.7385 -5.3533 1.8363 16 14 2.2166 -6.1059 4.0256 17 1 0.7578 -6.2550 4.2597 18 1 2.8898 -7.4101 4.2521 19 1 2.7680 -5.0949 4.9633 20 6 2.5247 -5.9302 -0.7118 21 6 2.0692 -6.8814 -1.5466 22 6 3.1952 -7.6158 -1.9844 23 6 4.2706 -7.0746 -1.3845 24 8 3.8585 -6.0540 -0.6148 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8898 -0.5142 28 1 4.3671 -1.7645 0.0092 29 1 4.4904 -5.4964 2.4322 30 1 1.0408 -7.0503 -1.8301 31 1 3.1921 -8.4529 -2.6667 32 1 5.2922 -7.4050 -1.5015 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344938571.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:50 Heat of formation + Delta-G solvation = -20.905174 kcal Electronic energy + Delta-G solvation = -21124.672489 eV Core-core repulsion = 17758.552121 eV Total energy + Delta-G solvation = -3366.120368 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.36110 -39.83851 -38.08092 -35.42973 -33.06283 -31.89626 -31.53609 -29.80323 -29.32174 -26.61228 -24.55704 -23.17894 -21.34404 -20.57087 -19.51237 -19.19333 -17.72286 -17.14679 -16.54769 -16.25356 -15.39471 -14.97207 -14.88324 -14.48184 -14.16876 -13.98310 -13.33926 -13.13010 -12.68609 -12.20075 -12.16255 -11.94858 -11.82727 -11.67573 -11.39818 -11.17869 -11.12250 -11.05250 -10.57365 -10.41346 -9.91099 -9.55813 -9.46939 -9.12544 -8.89450 -8.81370 -8.54580 -7.41101 -6.29809 -4.50951 0.64327 1.50460 1.87711 2.05674 2.84566 3.14740 3.23700 3.28508 3.48765 3.66895 3.83703 4.20058 4.22759 4.72886 5.02812 5.22457 5.52505 5.56702 5.72169 5.82038 5.86240 5.92232 5.95911 6.28118 6.33553 6.42364 6.75394 6.77007 6.88498 7.14857 7.41883 7.56019 7.65762 7.74105 8.36152 8.51124 8.84934 9.22812 10.69237 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.005851 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.857215 B = 4784.144132 C = 5378.071373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.168 3.832 3 N -0.478 5.478 4 S 0.261 5.739 5 C -0.130 4.130 6 C -0.197 4.197 7 C 0.531 3.469 8 O -0.518 6.518 9 O -0.328 6.328 10 C 0.279 3.721 11 H 0.074 0.926 12 C -0.546 4.546 13 H 0.076 0.924 14 C 0.080 3.920 15 N -0.825 5.825 16 Si 0.897 3.103 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.279 1.279 20 C 0.078 3.922 21 C -0.264 4.264 22 C -0.221 4.221 23 C -0.082 4.082 24 O -0.112 6.112 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.112 0.888 28 H 0.201 0.799 29 H 0.267 0.733 30 H 0.133 0.867 31 H 0.130 0.870 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.782 5.596 -4.657 7.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.010 4.010 3 N -0.299 5.299 4 S 0.416 5.584 5 C -0.279 4.279 6 C -0.215 4.215 7 C 0.373 3.627 8 O -0.411 6.411 9 O -0.243 6.243 10 C 0.227 3.773 11 H 0.092 0.908 12 C -0.582 4.582 13 H 0.094 0.906 14 C -0.131 4.131 15 N -0.458 5.458 16 Si 0.723 3.277 17 H -0.192 1.192 18 H -0.205 1.205 19 H -0.205 1.205 20 C 0.025 3.975 21 C -0.283 4.283 22 C -0.241 4.241 23 C -0.151 4.151 24 O -0.004 6.004 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.130 0.870 28 H 0.218 0.782 29 H 0.077 0.923 30 H 0.151 0.849 31 H 0.148 0.852 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.743 7.770 -4.445 9.362 hybrid contribution -0.773 -2.494 0.971 2.786 sum 1.970 5.276 -3.474 6.617 Atomic orbital electron populations 1.20936 0.85451 1.04936 1.04351 1.21451 0.99523 0.86712 0.93309 1.76454 1.00092 1.25953 1.27380 1.83880 1.11075 0.96824 1.66663 1.27675 0.99980 1.03461 0.96771 1.19927 0.92398 0.94276 1.14943 1.19812 0.85178 0.84629 0.73081 1.90660 1.15054 1.87495 1.47892 1.86804 1.41697 1.14953 1.80851 1.18835 0.87574 0.75059 0.95787 0.90819 1.21318 0.94179 1.48314 0.94386 0.90577 1.25166 0.95047 0.93558 0.99335 1.70038 0.97980 1.42253 1.35492 0.86444 0.79039 0.78478 0.83708 1.19193 1.20540 1.20517 1.22758 0.81174 0.98999 0.94618 1.21196 0.99480 1.01755 1.05888 1.21497 0.92840 1.03784 1.05964 1.23820 0.99319 0.93952 0.98038 1.84466 1.22551 1.41645 1.51703 0.89750 0.91078 0.86979 0.78190 0.92303 0.84896 0.85158 0.80037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 9.51 36.01 0.34 -1.07 16 2 C 0.17 2.81 6.75 -83.19 -0.56 2.25 16 3 N -0.48 -7.66 11.97 32.51 0.39 -7.28 16 4 S 0.26 3.56 23.69 -107.50 -2.55 1.01 16 5 C -0.13 -2.07 11.06 30.64 0.34 -1.73 16 6 C -0.20 -3.60 5.86 -105.96 -0.62 -4.22 16 7 C 0.53 11.52 7.87 34.37 0.27 11.79 16 8 O -0.52 -11.63 13.01 -19.29 -0.25 -11.88 16 9 O -0.33 -7.87 8.95 -42.72 -0.38 -8.26 16 10 C 0.28 6.92 2.59 -29.03 -0.08 6.84 16 11 H 0.07 1.77 7.15 -51.93 -0.37 1.40 16 12 C -0.55 -14.47 8.91 -34.44 -0.31 -14.77 16 13 H 0.08 2.01 7.81 -52.49 -0.41 1.60 16 14 C 0.08 2.08 5.24 -17.82 -0.09 1.99 16 15 N -0.82 -21.74 10.44 55.43 0.58 -21.16 16 16 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 C 0.08 1.87 5.67 -35.63 -0.20 1.67 16 21 C -0.26 -5.63 10.80 -39.70 -0.43 -6.06 16 22 C -0.22 -4.23 10.91 -39.70 -0.43 -4.66 16 23 C -0.08 -1.61 12.09 29.41 0.36 -1.25 16 24 O -0.11 -2.68 8.61 4.46 0.04 -2.64 16 25 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.11 1.80 5.63 -51.93 -0.29 1.51 16 28 H 0.20 3.03 8.06 -52.49 -0.42 2.60 16 29 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 30 H 0.13 2.56 8.06 -52.49 -0.42 2.14 16 31 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 32 H 0.18 2.79 8.06 -52.49 -0.42 2.37 16 LS Contribution 302.22 15.07 4.55 4.55 Total: -1.00 -29.33 302.22 -6.80 -36.13 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -2.75 Total: 3.42 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -1.41 Total: -9.23 kcal Atomic # 7 Polarization: -29.40 SS G_CDS: 0.97 Total: -28.43 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.59 Total: -22.77 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -2.55 Total: 1.01 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.33 -6.80 -36.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344938571.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.227 kcal (2) G-P(sol) polarization free energy of solvation -29.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds